mRNA_L-elsbetiae_contig5303.13463.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5303.13463.1
Unique NamemRNA_L-elsbetiae_contig5303.13463.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5303.13463.1 vs. uniprot
Match: D8LJE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 2.710e-10
Identity = 39/121 (32.23%), Postives = 54/121 (44.63%), Query Frame = 1 
Query:  100 DCIPCDVLFSELISTESGGHVQEVQMQLRGEPKSGTGMVHQWASGLLHHACDFLRRSFGENTCSMSWES------EDPDYMHRA-----------PTNRSLSFDPRLAAADAPCPCHNVDR 411
            +C PC+ +F +L      G  Q V++QLRGEPKSGT  + +WA   L   C+ L R +GE TC+  W        + P     A             NR          + +PCPC  VD+
Sbjct:   82 ECPPCETMFGKL-----NGAQQHVELQLRGEPKSGTSFMFEWAVNALMVTCEELGRLYGEGTCTFRWRGFFSRRKQKPVSPETALVDMKEVFFVFKPNRQHGRSSAGGPSASPCPCSTVDK 197
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5303.13463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJE4_ECTSI2.710e-1032.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5303contigL-elsbetiae_contig5303:5419..6615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size414
Cds size414
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816549.5243778-CDS-L-elsbetiae_contig5303:5418..56421622816549.5243778-CDS-L-elsbetiae_contig5303:5418..5642Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5303 5419..5642 -
1691683640.1105006-CDS-L-elsbetiae_contig5303:5418..56421691683640.1105006-CDS-L-elsbetiae_contig5303:5418..5642Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5303 5419..5642 -
1622816549.5383818-CDS-L-elsbetiae_contig5303:6425..66151622816549.5383818-CDS-L-elsbetiae_contig5303:6425..6615Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5303 6426..6615 -
1691683640.1244385-CDS-L-elsbetiae_contig5303:6425..66151691683640.1244385-CDS-L-elsbetiae_contig5303:6425..6615Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5303 6426..6615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5303.13463.1prot_L-elsbetiae_contig5303.13463.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5303 5419..6615 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5303.13463.1

>prot_L-elsbetiae_contig5303.13463.1 ID=prot_L-elsbetiae_contig5303.13463.1|Name=mRNA_L-elsbetiae_contig5303.13463.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp
MLLALPLAATVDGAPFPPQRRKNKDLPAAVLPADCIPCDVLFSELISTES
GGHVQEVQMQLRGEPKSGTGMVHQWASGLLHHACDFLRRSFGENTCSMSW
ESEDPDYMHRAPTNRSLSFDPRLAAADAPCPCHNVDR*
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mRNA from alignment at L-elsbetiae_contig5303:5419..6615-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5303.13463.1 ID=mRNA_L-elsbetiae_contig5303.13463.1|Name=mRNA_L-elsbetiae_contig5303.13463.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1197bp|location=Sequence derived from alignment at L-elsbetiae_contig5303:5419..6615- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCTCGCTTTGCCCCTTGCTGCGACGGTGGACGGTGCACCGTTCCC
GCCGCAGAGAAGAAAAAACAAGGACCTCCCCGCTGCCGTATTACCGGCGG
ATTGTATCCCTTGCGACGTTCTGTTTTCGGAGCTGATATCAACTGAGTCT
GGAGGGCATGTCCAAGAGGTTCAGATGCAGCTTCGAGGAGGTATGTGTAC
TCGGGGGATATAGTGCACTCCAGCGCGTGCACGCGTCCTTTTGAGTGGTT
TGACAAAAGCCGAAGCAAGGTGCTATTGGTTGCACTGACGATCGTCTATA
GATGATACAGGCTTCGACATGCTGGATGAAGCCTATGTATGGAGTACACA
GCAGCACTCTGTATAAATAAGGCAGCAGCACCACCGCTCGTGACTCCACC
CCGTCCCCAATATTGCCAATCCATATCAGTCTATCCCAAGTTTCACAATT
TGACATTGGTTTATCTGTACTGGCACTCTTAAGAAATATGTGGAGCAGTT
TTCCAATGCACGTAGTGAAAGGACGCTAAAAATCTATCCAATTTCACTTT
TTTTATATTTCATTGTTTTCTCTTAACTCCAGTCGTATACCTTTTGTGAG
GGTACACACAAGGTGGCATTGTTATTGAGTGGTTTGTTTCTATCCTGAGC
ATTTGTATAGGTATATATCCCCTGTTATTAGTAACAGGCTTAACAAGACT
GAAATTTAAATATAGTCTATCCATGGTCGTCCGACCTGTCCTCGCGTATC
GGAGTTCCGGCAGCACACATTTATGTTGGAGTCTGTTTTGCCTATCCAAG
ATCGCGTACGTCCCTAAAGTCCCCGTTTGGTTGCTTCTCACCCCCCCCCC
CTACCCCTCCTTCCGATAAACCGAGAAACATGTGAGCCTGGACGGGCCTG
TCTTGCTCGCGCCGCCTCTTCCTCCGCCTTTGCCTCTGCCTCTGCCTCAC
CCTTCTTTTCGCTTTCTCTTCAGAGCCAAAATCAGGCACGGGAATGGTCC
ACCAGTGGGCCAGCGGACTGCTCCACCACGCGTGCGACTTCCTGAGGCGC
TCTTTCGGCGAGAACACGTGCAGCATGTCCTGGGAGAGCGAGGATCCGGA
TTACATGCACAGGGCTCCCACCAACCGCTCCCTTTCCTTCGACCCGCGTC
TGGCGGCGGCGGACGCGCCCTGCCCGTGCCACAACGTTGACCGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5303:5419..6615-

>mRNA_L-elsbetiae_contig5303.13463.1 ID=mRNA_L-elsbetiae_contig5303.13463.1|Name=mRNA_L-elsbetiae_contig5303.13463.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig5303:5419..6615- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCTCGCTTTGCCCCTTGCTGCGACGGTGGACGGTGCACCGTTCCC
GCCGCAGAGAAGAAAAAACAAGGACCTCCCCGCTGCCGTATTACCGGCGG
ATTGTATCCCTTGCGACGTTCTGTTTTCGGAGCTGATATCAACTGAGTCT
GGAGGGCATGTCCAAGAGGTTCAGATGCAGCTTCGAGGAGATGCTGCTCG
CTTTGCCCCTTGCTGCGACGGTGGACGGTGCACCGTTCCCGCCGCAGAGA
AGAAAAAACAAGGACCTCCCCGCTGCCGTATTACCGGCGGATTGTATCCC
TTGCGACGTTCTGTTTTCGGAGCTGATATCAACTGAGTCTGGAGGGCATG
TCCAAGAGGTTCAGATGCAGCTTCGAGGAGAGCCAAAATCAGGCACGGGA
ATGGTCCACCAGTGGGCCAGCGGACTGCTCCACCACGCGTGCGACTTCCT
GAGGCGCTCTTTCGGCGAGAACACGTGCAGCATGTCCTGGGAGAGCGAGG
ATCCGGATTACATGCACAGGGCTCCCACCAACCGCTCCCTTTCCTTCGAC
CCGCGTCTGGCGGCGGCGGACGCGCCCTGCCCGTGCCACAACGTTGACCG
GTGAAGCCAAAATCAGGCACGGGAATGGTCCACCAGTGGGCCAGCGGACT
GCTCCACCACGCGTGCGACTTCCTGAGGCGCTCTTTCGGCGAGAACACGT
GCAGCATGTCCTGGGAGAGCGAGGATCCGGATTACATGCACAGGGCTCCC
ACCAACCGCTCCCTTTCCTTCGACCCGCGTCTGGCGGCGGCGGACGCGCC
CTGCCCGTGCCACAACGTTGACCGGTGA
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