|
|
Homology
BLAST of mRNA_L-elsbetiae_contig530.13458.1 vs. uniprot
Match: D7G298_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G298_ECTSI) HSP 1 Score: 316 bits (809), Expect = 1.320e-104 Identity = 178/244 (72.95%), Postives = 197/244 (80.74%), Query Frame = 1
Query: 307 MAVKSANN-KWCTSLSPVSRFSKSASSSNSGNSSRNRGR-EKSSALESGLAKLTLCASSFAWMHGKRCIRGFQRWRMLPAEFREQLQMALHIYLRPAEGAAVADFFDVEKTGSVNGECFVRWFLQAGLDSREKRLRAQAAKDHEEQRLREERXXXXXXXXXXXNASAVETEFSAEDRAAALLLLGKIALSYHDQRSGHEAAQRDFACALGPVSFRLQLFRSFGIRLTDRQFAALFDIMDINRDR 1032
MAV+S + +S + SR SKSAS+S RGR +K SALESGLAKLTLCASSFAWMHGK+CIRGFQR +MLPAEFREQLQM+LHIYLRP+EGAAVA FFDV++ GSVNGE FVRWFLQAGLDSRE+RLRAQAA R E N +AVE EFSAEDRA+ALLLLGKIALSYHDQR+GHEAAQRDFACALGP++FRLQLFRSFGIRLTDRQFAALFD+MDINRDR
Sbjct: 1 MAVRSTRELQRISSSASSSRVSKSASTSTDSW----RGRWKKQSALESGLAKLTLCASSFAWMHGKQCIRGFQRVQMLPAEFREQLQMSLHIYLRPSEGAAVARFFDVQQVGSVNGEVFVRWFLQAGLDSREERLRAQAAVXXXXXXXRREGERAEVARKRDANTAAVEVEFSAEDRASALLLLGKIALSYHDQRTGHEAAQRDFACALGPMAFRLQLFRSFGIRLTDRQFAALFDVMDINRDR 240
BLAST of mRNA_L-elsbetiae_contig530.13458.1 vs. uniprot
Match: A0A7S2GUE3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GUE3_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 3.920e-7 Identity = 58/196 (29.59%), Postives = 88/196 (44.90%), Query Frame = 1
Query: 448 LAKLTLCASSFAWM-HGKRC-IRGFQRWRMLPAEFREQLQMALHIYLRPAEGAAVADFFDVEKTGSVNGECFVRWFLQAGLDSREKRLRAQAAKDHEEQRLREERXXXXXXXXXXXNASAVETEFSAEDRAAALLLLGKIALSYHDQRSGHEAAQRD-FACALGPVSFRLQLFRSFGIRLTDRQFAALFDIMDINR 1026
+AKL A F HG R + GF R+ P + ++ L+ A + L E A+ FD G ++ + F R+FLQ L + + AQA +D E + + S ++ F EDRAA L K + +H ++ H+ Q D FA P ++ L G+RL DR+ AAL M +R
Sbjct: 88 MAKLRRAAKIFDLKRHGARQQLDGFSGRRLSPNQLKDGLRRAFLLRLDDDEIQAIMFKFDSNGDGYMDTDEFARFFLQISLSAAAQPREAQANEDSEREIMSRREASAKNLEERNREKSLLDLAFRDEDRAAYQDKLEKASKWWH-RKHYHDQIQLDTFARKFSPTELQVALQNVLGVRLKDRELAALCSDMSRHR 282
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-16_001950.1 |
| Exons | 5 |
| Model size | 1035 |
| Cds size | 1035 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816548.9370916-CDS-L-elsbetiae_contig530:15785..15936 | 1622816548.9370916-CDS-L-elsbetiae_contig530:15785..15936 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig530 15786..15936 - |
| 1691683639.6671693-CDS-L-elsbetiae_contig530:15785..15936 | 1691683639.6671693-CDS-L-elsbetiae_contig530:15785..15936 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig530 15786..15936 - |
| 1622816548.9472466-CDS-L-elsbetiae_contig530:16653..16841 | 1622816548.9472466-CDS-L-elsbetiae_contig530:16653..16841 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig530 16654..16841 - |
| 1691683639.6811514-CDS-L-elsbetiae_contig530:16653..16841 | 1691683639.6811514-CDS-L-elsbetiae_contig530:16653..16841 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig530 16654..16841 - |
| 1622816548.9610405-CDS-L-elsbetiae_contig530:17469..17646 | 1622816548.9610405-CDS-L-elsbetiae_contig530:17469..17646 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig530 17470..17646 - |
| 1691683639.693407-CDS-L-elsbetiae_contig530:17469..17646 | 1691683639.693407-CDS-L-elsbetiae_contig530:17469..17646 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig530 17470..17646 - |
| 1622816548.9724703-CDS-L-elsbetiae_contig530:18209..18428 | 1622816548.9724703-CDS-L-elsbetiae_contig530:18209..18428 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig530 18210..18428 - |
| 1691683639.7153125-CDS-L-elsbetiae_contig530:18209..18428 | 1691683639.7153125-CDS-L-elsbetiae_contig530:18209..18428 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig530 18210..18428 - |
| 1622816548.9882603-CDS-L-elsbetiae_contig530:18707..19007 | 1622816548.9882603-CDS-L-elsbetiae_contig530:18707..19007 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig530 18708..19007 - |
| 1691683639.7269468-CDS-L-elsbetiae_contig530:18707..19007 | 1691683639.7269468-CDS-L-elsbetiae_contig530:18707..19007 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig530 18708..19007 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig530.13458.1 >prot_L-elsbetiae_contig530.13458.1 ID=prot_L-elsbetiae_contig530.13458.1|Name=mRNA_L-elsbetiae_contig530.13458.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=345bp
MFARTSTGWELHSSRTRKRRLPWHLPFHDQPQPTPAMLASSQGDSSITGS
VSSCGLYSSGSRGGGCASLSTTSKKTMESLSASVYEELKPFRRAHRTLIK
NRMAVKSANNKWCTSLSPVSRFSKSASSSNSGNSSRNRGREKSSALESGL
AKLTLCASSFAWMHGKRCIRGFQRWRMLPAEFREQLQMALHIYLRPAEGA
AVADFFDVEKTGSVNGECFVRWFLQAGLDSREKRLRAQAAKDHEEQRLRE
ERQREEEARQREANASAVETEFSAEDRAAALLLLGKIALSYHDQRSGHEA
AQRDFACALGPVSFRLQLFRSFGIRLTDRQFAALFDIMDINRDR* back to topmRNA from alignment at L-elsbetiae_contig530:15786..19007- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig530.13458.1 ID=mRNA_L-elsbetiae_contig530.13458.1|Name=mRNA_L-elsbetiae_contig530.13458.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3222bp|location=Sequence derived from alignment at L-elsbetiae_contig530:15786..19007- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCGCACGCACTTCCACAGGATGGGAACTCCACTCGTCTCGAACCCG
GAAGCGCCGCCTCCCCTGGCACCTTCCATTCCACGATCAACCGCAGCCGA
CCCCGGCGATGCTTGCGAGTTCCCAGGGCGACAGCTCGATCACGGGAAGT
GTATCTTCTTGTGGCCTGTATAGTAGCGGTAGCCGTGGTGGCGGCTGCGC
TTCGCTCTCGACCACATCGAAGAAAACCATGGAATCCTTGTCCGCGTCTG
TCTACGAGGAGCTGAAGCCGTTTCGGCGCGCTCACCGGACGTTGATCAAG
GTATATGCATGAATCAACCGTGCGATATCGTAACGGTGTTGAAAACCGAG
AGTTTCGCCGATCGAAATCGAGTAAAGCAACACATCTACACGCTCCAGGA
CAAAATAAAAGCACGGAACGTCGAACATTGGATATGTAGGGTGCACACAC
ACACCAAAGTGGGATGCCTCAAGCGAAATCTGTAGCGCCCGGTGGCCTGT
GCAGTACCCCCAGGCGGTCTCGAAATTGTTTTATTAAATCACATTCGGCG
CCTCCCAATCGTACCGCTGTGTCATCCAGAATCGAATGGCGGTCAAGTCG
GCCAACAACAAGTGGTGTACATCGCTTTCTCCGGTTTCGCGCTTCAGCAA
GAGTGCGAGCAGCAGCAACAGCGGCAACAGCAGCAGGAATAGGGGGCGGG
AAAAGTCGAGCGCCCTTGAGAGTGGACTGGCGAAGCTGACTTTGTGCGCC
TCTTCTTTCGCGTGGATGCACGGAAAGCGGTGCATCAGGGGATTTCAGGT
TTCGATCTTTCTTCCCTTTGAATGCACGGTTTGTTCATATTCTGTACTTC
TACAAGAACATTACTGACACCGCAGAAGAACTTACGCGGCGAGTTTCTTC
GAAGGTTCCTGTTCCGCATATCGATCCACTTCAACACATCGAGGCACTTG
ATTGGTACCATCCTTTTGGAATTCCAACCGCAGTTTCAGCCGTTTACGGA
TTCCGGTAACGATTTACACGAGGTGCTAAACAGGCCTTACACAATCTGTG
CCACCGTGGACCTTTAGTATTGTTTTTGGCCTTTCGGGGACACCTGGAAC
TTCTCAACATCCTCCTGCACGGCCAAAAGTAGACTTAAAATCAAGCAGCC
CCGCGGATCCCTGCCGAGTGCAAAAACAAACCGAGCAAAAGACGGTGGGC
TGCAGTACGCGGCCTGCACTTCGGTATAAAAACTCTTGCGTGACCAAGCG
GGGTTATTGGGATATTTTGCTCTGAATATCCTAGCTCATGCACCACACCC
CCTCGCCTTGCTTTTCCTCTTATTTCTCCTCTGTCTTCCCCCTCCTATGC
ATCACCGCCAGCGTTGGCGAATGCTCCCGGCGGAGTTCAGAGAGCAGCTG
CAGATGGCGCTCCACATCTACCTCCGCCCCGCCGAGGGTGCCGCCGTCGC
AGACTTCTTCGACGTCGAGAAGACCGGCTCAGTCAACGGAGAGTGCTTCG
TGCGCTGGTTTTTACAGGCCGGGTTGGACTCGCGCGAGGTACCTAACTAC
TTGGCTGCCGTCGTGGCGGCTTTTTTCTTTTGCTGTTTTTGATATTAGGC
AGTAGTACCACCTCGTTGTGGGTAAAAAATGGCGGAAGGGAATATGCCGC
TGGCGGCCTCGTGCCGTCTATCTTGACAGCAGTCAGCGAAAGCTAGCGGT
ATTAATGAGTATGGTGCGCGATGTCCTCGGTGCATTCAGGGTCAAAATTT
AGCAGAGGCTGGTGGCTCGACGCCGGCGGTGGCAAAATGCTGCCCATGAG
AAGCATTTGTGTGCACCACAAGATACAACACGCTCTTCTAGTACACTGCC
GTCCTGTTGTGCCTGCTAAGTGACGTTCACCTTACACACATAGGCTTCTC
CGGTTCCCCCACCTCCTTACCCACTGCATCACTTGCCTGTGCAATACGAC
TCACCTGCGAACAAGCTTGAAGTTCAGATTTTGCGCTTGTCAAAATAACC
GATTTTCAAGAAGCCAGGAGGCGGCAGCGTAGTAAGGTTTATCGTAAATT
CGCCGAGTCCGCCTCGCTAACCCAGACTTTTGCCTTATTCTCCACCCCTA
TTCCCCTTTCGCGCTCTTTCACGTGGCATACGTGCGTGCGTCGCGTAAAT
TACGTGCGCAACACAGAAACGGTTGAGAGCCCAAGCGGCCAAGGACCACG
AGGAGCAGAGGCTCCGCGAAGAGAGACAGCGAGAGGAAGAAGCCCGGCAA
CGCGAGGCCAACGCATCTGCCGTCGAGACCGAGTTCTCAGCGGAAGACCG
TGCCGCGGCTCTGCTCTTGCTGGGGAAGATTGCGCTCTCCTACCACGACC
AAAGGTGTTGAAAAGGGGGCGGGGGGGGGTGGCTTGTTGTGGCGCACGAC
GGCGTACTTGAGAGTCTCGCAAGAGTAGAGGTGACGGGGGGTGTATGGTT
TGGTATGGTACGAGGATGGTTGTGCAAGTTGTTCTCCCCGGGTTTTGTGA
GAGAGGCACGTGCGCCCGGCAAGTTCAACACAGGGGTGGATGGGGGGGAT
CGAAAGGGCCGGAGAGAAGTGTATTGGGGTGTTCTCCGCAAGTTTTAACC
CGATTTGGCCCCGCATCTTTAGTTAAGACGAAACATGTTTTCCCCAGCCC
CTCAGCTTTTGCCAGAAATATGATCCCATTTGTTGTGTTGAGAGACCATC
GTTCGTTTTGTTTCTCTCAAGACACTCTGTGGCAGTTTCCAACTTTCATC
AGCTCCTTCCCACAAGGGGGAGAGGGGCGTTCCGACGAGAAACTTGCAGT
CATATTTGAGCCTTCTCCGTACCGCCACACTCTGTTGTTCGAAACGTCTC
CGTTTGGTCCACTCGAGGTGGTGCGTGTCTCAAGCTCACCGTTCGGTGGG
TACTTTGGGTTGCAACCGACCTTTCCGCGCGTTTTACTTTTGAATACAGA
CTACCATTTTCGTTCGAGCATTTGTTATTTTTGTGATCTAAACGCGCCAC
TGCCAACCCCCACCCCCAACCACCACCGACAACAACAACAACAACAACAA
CAACAACAACAACAACGTTAGATCCGGCCACGAGGCGGCCCAGCGAGACT
TTGCGTGCGCGCTGGGCCCCGTATCCTTCCGCCTGCAGCTGTTCCGCTCG
TTCGGGATACGGCTAACGGACCGGCAGTTCGCGGCCCTGTTCGATATCAT
GGACATCAATCGAGACCGGTAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig530:15786..19007- >mRNA_L-elsbetiae_contig530.13458.1 ID=mRNA_L-elsbetiae_contig530.13458.1|Name=mRNA_L-elsbetiae_contig530.13458.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2070bp|location=Sequence derived from alignment at L-elsbetiae_contig530:15786..19007- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCGCACGCACTTCCACAGGATGGGAACTCCACTCGTCTCGAACCCG
GAAGCGCCGCCTCCCCTGGCACCTTCCATTCCACGATCAACCGCAGCCGA
CCCCGGCGATGCTTGCGAGTTCCCAGGGCGACAGCTCGATCACGGGAAGT
GTATCTTCTTGTGGCCTGTATAGTAGCGGTAGCCGTGGTGGCGGCTGCGC
TTCGCTCTCGACCACATCGAAGAAAACCATGGAATCCTTGTCCGCGTCTG
TCTACGAGGAGCTGAAGCCGTTTCGGCGCGCTCACCGGACGTTGATCAAG
ATGTTCGCACGCACTTCCACAGGATGGGAACTCCACTCGTCTCGAACCCG
GAAGCGCCGCCTCCCCTGGCACCTTCCATTCCACGATCAACCGCAGCCGA
CCCCGGCGATGCTTGCGAGTTCCCAGGGCGACAGCTCGATCACGGGAAGT
GTATCTTCTTGTGGCCTGTATAGTAGCGGTAGCCGTGGTGGCGGCTGCGC
TTCGCTCTCGACCACATCGAAGAAAACCATGGAATCCTTGTCCGCGTCTG
TCTACGAGGAGCTGAAGCCGTTTCGGCGCGCTCACCGGACGTTGATCAAG
AATCGAATGGCGGTCAAGTCGGCCAACAACAAGTGGTGTACATCGCTTTC
TCCGGTTTCGCGCTTCAGCAAGAGTGCGAGCAGCAGCAACAGCGGCAACA
GCAGCAGGAATAGGGGGCGGGAAAAGTCGAGCGCCCTTGAGAGTGGACTG
GCGAAGCTGACTTTGTGCGCCTCTTCTTTCGCGTGGATGCACGGAAAGCG
GTGCATCAGGGGATTTCAGAATCGAATGGCGGTCAAGTCGGCCAACAACA
AGTGGTGTACATCGCTTTCTCCGGTTTCGCGCTTCAGCAAGAGTGCGAGC
AGCAGCAACAGCGGCAACAGCAGCAGGAATAGGGGGCGGGAAAAGTCGAG
CGCCCTTGAGAGTGGACTGGCGAAGCTGACTTTGTGCGCCTCTTCTTTCG
CGTGGATGCACGGAAAGCGGTGCATCAGGGGATTTCAGCGTTGGCGAATG
CTCCCGGCGGAGTTCAGAGAGCAGCTGCAGATGGCGCTCCACATCTACCT
CCGCCCCGCCGAGGGTGCCGCCGTCGCAGACTTCTTCGACGTCGAGAAGA
CCGGCTCAGTCAACGGAGAGTGCTTCGTGCGCTGGTTTTTACAGGCCGGG
TTGGACTCGCGCGAGCGTTGGCGAATGCTCCCGGCGGAGTTCAGAGAGCA
GCTGCAGATGGCGCTCCACATCTACCTCCGCCCCGCCGAGGGTGCCGCCG
TCGCAGACTTCTTCGACGTCGAGAAGACCGGCTCAGTCAACGGAGAGTGC
TTCGTGCGCTGGTTTTTACAGGCCGGGTTGGACTCGCGCGAGAAACGGTT
GAGAGCCCAAGCGGCCAAGGACCACGAGGAGCAGAGGCTCCGCGAAGAGA
GACAGCGAGAGGAAGAAGCCCGGCAACGCGAGGCCAACGCATCTGCCGTC
GAGACCGAGTTCTCAGCGGAAGACCGTGCCGCGGCTCTGCTCTTGCTGGG
GAAGATTGCGCTCTCCTACCACGACCAAAGAAACGGTTGAGAGCCCAAGC
GGCCAAGGACCACGAGGAGCAGAGGCTCCGCGAAGAGAGACAGCGAGAGG
AAGAAGCCCGGCAACGCGAGGCCAACGCATCTGCCGTCGAGACCGAGTTC
TCAGCGGAAGACCGTGCCGCGGCTCTGCTCTTGCTGGGGAAGATTGCGCT
CTCCTACCACGACCAAAGATCCGGCCACGAGGCGGCCCAGCGAGACTTTG
CGTGCGCGCTGGGCCCCGTATCCTTCCGCCTGCAGCTGTTCCGCTCGTTC
GGGATACGGCTAACGGACCGGCAGTTCGCGGCCCTGTTCGATATCATGGA
CATCAATCGAGACCGGTAGATCCGGCCACGAGGCGGCCCAGCGAGACTTT
GCGTGCGCGCTGGGCCCCGTATCCTTCCGCCTGCAGCTGTTCCGCTCGTT
CGGGATACGGCTAACGGACCGGCAGTTCGCGGCCCTGTTCGATATCATGG
ACATCAATCGAGACCGGTAG back to top
|