mRNA_L-elsbetiae_contig53.13453.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig53.13453.1
Unique NamemRNA_L-elsbetiae_contig53.13453.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig53.13453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig53contigL-elsbetiae_contig53:29371..30058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size688
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig53.13453.1prot_L-elsbetiae_contig53.13453.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig53 29598..29975 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816547.7437081-UTR-L-elsbetiae_contig53:29370..295971622816547.7437081-UTR-L-elsbetiae_contig53:29370..29597Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig53 29371..29597 +
1691683638.6703403-UTR-L-elsbetiae_contig53:29370..295971691683638.6703403-UTR-L-elsbetiae_contig53:29370..29597Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig53 29371..29597 +
1622816547.7643137-UTR-L-elsbetiae_contig53:29975..300581622816547.7643137-UTR-L-elsbetiae_contig53:29975..30058Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig53 29976..30058 +
1691683638.7332163-UTR-L-elsbetiae_contig53:29975..300581691683638.7332163-UTR-L-elsbetiae_contig53:29975..30058Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig53 29976..30058 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816547.753656-CDS-L-elsbetiae_contig53:29597..299751622816547.753656-CDS-L-elsbetiae_contig53:29597..29975Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig53 29598..29975 +
1691683638.7238638-CDS-L-elsbetiae_contig53:29597..299751691683638.7238638-CDS-L-elsbetiae_contig53:29597..29975Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig53 29598..29975 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig53.13453.1

>prot_L-elsbetiae_contig53.13453.1 ID=prot_L-elsbetiae_contig53.13453.1|Name=mRNA_L-elsbetiae_contig53.13453.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
MVTHVNLVKYAALAEKAACGRYRNYARTNLSRLFAKTLSWVGLRLSLPIA
DVPNKKAFVTIVCTPKAANKRLEYSSVTRWFPLAAVNSRVFECTRGTGWF
IPRRWTYSQPFSIRAYLNQRTQSLL*
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mRNA from alignment at L-elsbetiae_contig53:29371..30058+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig53.13453.1 ID=mRNA_L-elsbetiae_contig53.13453.1|Name=mRNA_L-elsbetiae_contig53.13453.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=688bp|location=Sequence derived from alignment at L-elsbetiae_contig53:29371..30058+ (Laminarionema elsbetiae ELsaHSoW15)
CTCTCGCCCGCATTGGCACGCCACACAGTCACTCTTTGCGTCACTAACCG
TAGCGAAATGAAAGAAACCTCTATACTACAACGTCCGCTCTACGTAGTTC
GTCACGTCTGACGGAATGAATCGACAAGGTCGACACTTGGCATCCAGTCT
TCGGTCGAATTAACAGCATTTATGCTAGCGTATATATTTCCGTACGACGG
GGTGCAGGCCATCGCGTCTCGTAACGTATGGTCACACATGTAAACCTAGT
GAAGTACGCCGCTCTGGCCGAGAAAGCAGCATGTGGAAGATACCGTAATT
ACGCCAGAACAAATCTATCTCGCCTGTTCGCCAAAACATTATCGTGGGTG
GGGTTGCGGCTTTCACTCCCTATCGCAGATGTACCGAATAAGAAAGCATT
CGTCACGATTGTTTGTACGCCAAAGGCAGCAAATAAAAGGTTGGAATACA
GCTCAGTGACCCGATGGTTCCCGCTGGCGGCAGTCAACTCCAGAGTGTTT
GAGTGTACGAGAGGGACGGGTTGGTTCATCCCGAGAAGGTGGACATATTC
TCAACCATTCTCGATCCGAGCGTATCTAAACCAGAGAACGCAGAGCTTGC
TTTGATGCGCCGAACGCATGAGGCACGCTTGGTGCGAGGCAAGAGTGTGA
TCACCACCACCAGCCTTTCTTGTCTGCCTTCGCGATCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig53:29371..30058+

>mRNA_L-elsbetiae_contig53.13453.1 ID=mRNA_L-elsbetiae_contig53.13453.1|Name=mRNA_L-elsbetiae_contig53.13453.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig53:29371..30058+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCACACATGTAAACCTAGTGAAGTACGCCGCTCTGGCCGAGAAAGC
AGCATGTGGAAGATACCGTAATTACGCCAGAACAAATCTATCTCGCCTGT
TCGCCAAAACATTATCGTGGGTGGGGTTGCGGCTTTCACTCCCTATCGCA
GATGTACCGAATAAGAAAGCATTCGTCACGATTGTTTGTACGCCAAAGGC
AGCAAATAAAAGGTTGGAATACAGCTCAGTGACCCGATGGTTCCCGCTGG
CGGCAGTCAACTCCAGAGTGTTTGAGTGTACGAGAGGGACGGGTTGGTTC
ATCCCGAGAAGGTGGACATATTCTCAACCATTCTCGATCCGAGCGTATCT
AAACCAGAGAACGCAGAGCTTGCTTTGAATGGTCACACATGTAAACCTAG
TGAAGTACGCCGCTCTGGCCGAGAAAGCAGCATGTGGAAGATACCGTAAT
TACGCCAGAACAAATCTATCTCGCCTGTTCGCCAAAACATTATCGTGGGT
GGGGTTGCGGCTTTCACTCCCTATCGCAGATGTACCGAATAAGAAAGCAT
TCGTCACGATTGTTTGTACGCCAAAGGCAGCAAATAAAAGGTTGGAATAC
AGCTCAGTGACCCGATGGTTCCCGCTGGCGGCAGTCAACTCCAGAGTGTT
TGAGTGTACGAGAGGGACGGGTTGGTTCATCCCGAGAAGGTGGACATATT
CTCAACCATTCTCGATCCGAGCGTATCTAAACCAGAGAACGCAGAGCTTG
CTTTGA
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