mRNA_L-elsbetiae_contig53.13452.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig53.13452.1
Unique NamemRNA_L-elsbetiae_contig53.13452.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig53.13452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig53contigL-elsbetiae_contig53:24891..25464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size574
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig53.13452.1prot_L-elsbetiae_contig53.13452.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig53 25002..25334 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816547.6928885-UTR-L-elsbetiae_contig53:24890..250011622816547.6928885-UTR-L-elsbetiae_contig53:24890..25001Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig53 24891..25001 +
1691683638.637989-UTR-L-elsbetiae_contig53:24890..250011691683638.637989-UTR-L-elsbetiae_contig53:24890..25001Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig53 24891..25001 +
1622816547.7168798-UTR-L-elsbetiae_contig53:25334..254641622816547.7168798-UTR-L-elsbetiae_contig53:25334..25464Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig53 25335..25464 +
1691683638.6594815-UTR-L-elsbetiae_contig53:25334..254641691683638.6594815-UTR-L-elsbetiae_contig53:25334..25464Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig53 25335..25464 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816547.7044346-CDS-L-elsbetiae_contig53:25001..253341622816547.7044346-CDS-L-elsbetiae_contig53:25001..25334Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig53 25002..25334 +
1691683638.6487129-CDS-L-elsbetiae_contig53:25001..253341691683638.6487129-CDS-L-elsbetiae_contig53:25001..25334Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig53 25002..25334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig53.13452.1

>prot_L-elsbetiae_contig53.13452.1 ID=prot_L-elsbetiae_contig53.13452.1|Name=mRNA_L-elsbetiae_contig53.13452.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
MNSVCSTTRESQVIGAVYRFTSRGAHCVRRPTGMMKKRDASSRTYLSSRG
LTRSKTLKFALFSTSSSELYAKATSPQHRLKDEPRPPQRRRAAFASAQNI
RAVDVRPPVE*
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mRNA from alignment at L-elsbetiae_contig53:24891..25464+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig53.13452.1 ID=mRNA_L-elsbetiae_contig53.13452.1|Name=mRNA_L-elsbetiae_contig53.13452.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=574bp|location=Sequence derived from alignment at L-elsbetiae_contig53:24891..25464+ (Laminarionema elsbetiae ELsaHSoW15)
AACACGTAAACCTGGTCGTAACTTTACAGGTGTACGGATTTAACCACTGT
TCACGTAGTTTCGTCTCTCTCAAGTTTGCAGCGTGTCCAGCCACTCCGTG
TCTCACCACCTATGAACTCTGTCTGTAGCACCACTCGTGAGTCGCAAGTC
ATTGGCGCTGTGTATCGTTTCACAAGTAGAGGAGCGCACTGTGTGCGTCG
CCCAACCGGCATGATGAAGAAGCGGGATGCGTCATCTCGCACCTATTTAT
CATCTCGGGGTTTGACAAGAAGTAAAACTTTGAAGTTTGCGTTGTTCTCC
ACGAGCAGCAGTGAGCTATATGCAAAAGCCACTTCGCCCCAACACCGACT
CAAAGACGAGCCACGACCGCCTCAAAGACGTCGAGCAGCTTTTGCTTCAG
CACAAAACATCAGAGCAGTCGATGTACGCCCACCTGTGGAGTAATAGGCA
TTTCCCGGGGGGTCGCTGTTGTAACAGCATCAACCCTCCCCCGCCGCTCC
AGCTACAGAATCATCATTTGTTTTGTTTTTGAACTTACTCCCGAGCAGGT
GGCTCGGTTCAAAGCGGAGAGCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig53:24891..25464+

>mRNA_L-elsbetiae_contig53.13452.1 ID=mRNA_L-elsbetiae_contig53.13452.1|Name=mRNA_L-elsbetiae_contig53.13452.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig53:24891..25464+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACTCTGTCTGTAGCACCACTCGTGAGTCGCAAGTCATTGGCGCTGT
GTATCGTTTCACAAGTAGAGGAGCGCACTGTGTGCGTCGCCCAACCGGCA
TGATGAAGAAGCGGGATGCGTCATCTCGCACCTATTTATCATCTCGGGGT
TTGACAAGAAGTAAAACTTTGAAGTTTGCGTTGTTCTCCACGAGCAGCAG
TGAGCTATATGCAAAAGCCACTTCGCCCCAACACCGACTCAAAGACGAGC
CACGACCGCCTCAAAGACGTCGAGCAGCTTTTGCTTCAGCACAAAACATC
AGAGCAGTCGATGTACGCCCACCTGTGGAGTAAATGAACTCTGTCTGTAG
CACCACTCGTGAGTCGCAAGTCATTGGCGCTGTGTATCGTTTCACAAGTA
GAGGAGCGCACTGTGTGCGTCGCCCAACCGGCATGATGAAGAAGCGGGAT
GCGTCATCTCGCACCTATTTATCATCTCGGGGTTTGACAAGAAGTAAAAC
TTTGAAGTTTGCGTTGTTCTCCACGAGCAGCAGTGAGCTATATGCAAAAG
CCACTTCGCCCCAACACCGACTCAAAGACGAGCCACGACCGCCTCAAAGA
CGTCGAGCAGCTTTTGCTTCAGCACAAAACATCAGAGCAGTCGATGTACG
CCCACCTGTGGAGTAA
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