mRNA_L-elsbetiae_contig53.13450.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig53.13450.1
Unique NamemRNA_L-elsbetiae_contig53.13450.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig53.13450.1 vs. uniprot
Match: D7FXV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV0_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 1.980e-49
Identity = 119/256 (46.48%), Postives = 134/256 (52.34%), Query Frame = 1 
Query:    1 QRLRLGRTTNSRIGAGVARGLPESQGGVHGRVAGGVSCMEFDSQGWQLAVAGEKSVTVYDFDTYVFENVQLKHTLVSGVQAYLQPTDGIKTAYTVSCVRWNPANEEQLAVSYHYHDEVEVYDLMTIEAGGSAKPVLTLKPSTTGPASDLGKGHFCLEFVRRGAPGKAVTHLVAGSRGGVFRVWRFFPKRATELAPFMQGQVSVSPRGA-ASRANVTAVCCLDPDVVLVGTDLGHLASYSLDPPKLKNFRSSKEADQ 765
            QRLR+G  +NS  G+GV RG P SQG + GR+AGGVSCMEFDS GWQLAV GE +VTVYDFD Y+ EN Q+K TL SGV+AYLQPTDGI+T  TVSCVRWNPAN +Q                                                                                           GQV+ S RG  ASRA VTAVCCL PDVVLVGTD G LA+YSL+ P +KNFRSSK ADQ
Sbjct:  311 QRLRMGCVSNSGTGSGVVRGHPASQG-LQGRIAGGVSCMEFDSVGWQLAVGGE-NVTVYDFDRYLPENQQVKRTLESGVRAYLQPTDGIQTKRTVSCVRWNPANGDQ-------------------------------------------------------------------------------------------GQVTASHRGGGASRAAVTAVCCLTPDVVLVGTDSGQLATYSLNLPVVKNFRSSKSADQ 473
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BLAST of mRNA_L-elsbetiae_contig53.13450.1 vs. uniprot
Match: A0A6H5JZC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZC0_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.350e-15
Identity = 46/67 (68.66%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:    1 QRLRLGRTTNSRIGAGVARGLPESQGGVHGRVAGGVSCMEFDSQGWQLAVAGEKSVTVYDFDTYVFE 201
            QRLR+G  +NS  G+GV RG P SQG + GR+AGGVSCMEFDS GWQLAV GE +VTVYDFD Y+ E
Sbjct:  143 QRLRMGCVSNSGTGSGVVRGHPASQG-LQGRIAGGVSCMEFDSVGWQLAVGGE-NVTVYDFDRYLPE 207
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BLAST of mRNA_L-elsbetiae_contig53.13450.1 vs. uniprot
Match: A0A830B0C2_9LAMI (Uncharacterized protein n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830B0C2_9LAMI)

HSP 1 Score: 55.8 bits (133), Expect = 2.030e-5
Identity = 49/158 (31.01%), Postives = 74/158 (46.84%), Query Frame = 1 
Query:   85 HGRVAGGVSCMEFDSQGWQLA-VAGEKSVTVYDFDTYVFENVQLKHTLVSGVQAYLQPTDGIKTAYTVSCVRWNPANEEQLAVSYHYHDEVEVYDLMTIEAGGSAKPVLTLK--PSTTGPASDLGKGHFCLEFVRRGAPGKAVTHLVAGSRGGVFRVW 549
            H R   GVS +EFDS+G  LA V     +TV+DFDT     +Q   +     +  L     I T   +  VRWN AN++++A +     EV ++D+  I    S++PV  L+  P+ T    ++ KG   + F          + L+A    GV  VW
Sbjct:   36 HARPMQGVSSLEFDSKGVYLASVTKSGCLTVHDFDT-----IQGSDSKEDEAKQLLH----ISTCQQLDVVRWNLANQDEIACTSMKSSEVHIFDIGYI----SSEPVEVLRKRPNITVHGFNVHKGFSDIAF-----SSDDNSRLLASDSNGVINVW 175
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BLAST of mRNA_L-elsbetiae_contig53.13450.1 vs. uniprot
Match: A0A164STU0_DAUCS (Uncharacterized protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A164STU0_DAUCS)

HSP 1 Score: 55.5 bits (132), Expect = 3.240e-5
Identity = 49/163 (30.06%), Postives = 80/163 (49.08%), Query Frame = 1 
Query:  103 GVSCMEFDSQGWQLAVAGEKS-VTVYDFDT-YVFENVQLKHTLVSGVQAYLQPTDGIKTAYTVSCVRWNPANEEQLAVSYHYHDEVEVYDLMTIEAGGSAKPVLTLK--PSTTGPASDLGKGHFCLEFVRRGAPGKAVTHLVAGSRGGVFRVWRFFPKRATEL 579
            GVSC+E DS+G  LA A +   ++V+DFDT Y      +        +  L     I T + +  VRWN AN++++A +     EV ++D+  +    S++PV  L+  PS +   S + KG   + F  R       + ++A    GV  VW    +R++EL
Sbjct:   91 GVSCLELDSKGIYLASATKLGCLSVHDFDTLYCQATTPIPDLKEDETKHVLH----INTGHQIDVVRWNIANQDEVACTSMRSSEVYIFDIGYM----SSEPVKVLRKRPSVSIHGSGVHKGLSDVAFTSRDD-----SRVLASDTHGVVNVW---DRRSSEL 237
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BLAST of mRNA_L-elsbetiae_contig53.13450.1 vs. uniprot
Match: A0A5B7C8D2_DAVIN (Uncharacterized protein (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7C8D2_DAVIN)

HSP 1 Score: 55.1 bits (131), Expect = 4.430e-5
Identity = 44/152 (28.95%), Postives = 74/152 (48.68%), Query Frame = 1 
Query:  103 GVSCMEFDSQG-WQLAVAGEKSVTVYDFDTYVFENVQLKHTLVSGVQAYLQPTDGIKTAYTVSCVRWNPANEEQLAVSYHYHDEVEVYDLMTIEAGGSAKPVLTL--KPSTTGPASDLGKGHFCLEFVRRGAPGKAVTHLVAGSRGGVFRVW 549
            G+S +EFD++G + ++V     +TV+DF+T   +  ++   L      ++     I T   +  VRWN AN++++A +     EV ++D+  I    S++PV  L  KP+ T    D  KG   + F     P    + L+A    GV  VW
Sbjct:  114 GISALEFDTKGIYLVSVTKLGCLTVHDFETLFCQGNEISPCLKEDETKHVLH---ISTCQQLDVVRWNLANQDEVACTSMKSSEVRIFDIGYI----SSEPVEVLRKKPTVTVHGHDDHKGLSDIAF-----PSNDDSRLLASDTCGVINVW 253
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig53.13450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FXV0_ECTSI1.980e-4946.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZC0_9PHAE2.350e-1568.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A830B0C2_9LAMI2.030e-531.01Uncharacterized protein n=1 Tax=Phtheirospermum ja... [more]
A0A164STU0_DAUCS3.240e-530.06Uncharacterized protein n=1 Tax=Daucus carota subs... [more]
A0A5B7C8D2_DAVIN4.430e-528.95Uncharacterized protein (Fragment) n=1 Tax=Davidia... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig53contigL-elsbetiae_contig53:19408..21690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue5e-09
Seed eggNOG ortholog112098.XP_008610631.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.WD40 repeats
EggNOG OGs28M25@1,2QTIU@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size768
Cds size765
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig53.13450.1prot_L-elsbetiae_contig53.13450.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig53 19409..21690 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816547.9323492-CDS-L-elsbetiae_contig53:19408..195791622816547.9323492-CDS-L-elsbetiae_contig53:19408..19579Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig53 19409..19579 -
1691683638.8645244-CDS-L-elsbetiae_contig53:19408..195791691683638.8645244-CDS-L-elsbetiae_contig53:19408..19579Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig53 19409..19579 -
1622816547.9447787-CDS-L-elsbetiae_contig53:20094..203671622816547.9447787-CDS-L-elsbetiae_contig53:20094..20367Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig53 20095..20367 -
1691683638.8815765-CDS-L-elsbetiae_contig53:20094..203671691683638.8815765-CDS-L-elsbetiae_contig53:20094..20367Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig53 20095..20367 -
1622816547.958802-CDS-L-elsbetiae_contig53:20691..208111622816547.958802-CDS-L-elsbetiae_contig53:20691..20811Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig53 20692..20811 -
1691683638.8972788-CDS-L-elsbetiae_contig53:20691..208111691683638.8972788-CDS-L-elsbetiae_contig53:20691..20811Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig53 20692..20811 -
1622816547.9716818-CDS-L-elsbetiae_contig53:21489..216901622816547.9716818-CDS-L-elsbetiae_contig53:21489..21690Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig53 21490..21690 -
1691683638.907935-CDS-L-elsbetiae_contig53:21489..216901691683638.907935-CDS-L-elsbetiae_contig53:21489..21690Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig53 21490..21690 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig53.13450.1

>prot_L-elsbetiae_contig53.13450.1 ID=prot_L-elsbetiae_contig53.13450.1|Name=mRNA_L-elsbetiae_contig53.13450.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=255bp
QRLRLGRTTNSRIGAGVARGLPESQGGVHGRVAGGVSCMEFDSQGWQLAV
AGEKSVTVYDFDTYVFENVQLKHTLVSGVQAYLQPTDGIKTAYTVSCVRW
NPANEEQLAVSYHYHDEVEVYDLMTIEAGGSAKPVLTLKPSTTGPASDLG
KGHFCLEFVRRGAPGKAVTHLVAGSRGGVFRVWRFFPKRATELAPFMQGQ
VSVSPRGAASRANVTAVCCLDPDVVLVGTDLGHLASYSLDPPKLKNFRSS
KEADQ
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mRNA from alignment at L-elsbetiae_contig53:19408..21690-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig53.13450.1 ID=mRNA_L-elsbetiae_contig53.13450.1|Name=mRNA_L-elsbetiae_contig53.13450.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2283bp|location=Sequence derived from alignment at L-elsbetiae_contig53:19408..21690- (Laminarionema elsbetiae ELsaHSoW15)
CAGCGGCTGAGACTGGGGCGCACGACCAACTCGCGCATAGGGGCGGGGGT
CGCGCGGGGTCTCCCGGAGAGCCAGGGCGGCGTCCATGGGCGAGTGGCCG
GCGGTGTCTCGTGCATGGAGTTCGATTCCCAGGGCTGGCAGCTGGCGGTG
GCGGGAGAGAAGAGCGTGACGGTGTACGACTTCGACACGTACGTTTTTGA
GGTAAGCGTTTTTTTTTGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTT
TGGTAGCCTTGGTCTGTTCGTGCGGGAAAAGGCGACTTTCGTCTTGTGGT
TGAGCGCCCCAGTTTTCACGGCGCTGTCGGGGGGCTATTGTTTGAACAGA
TGTCGTTAAGTTTGGCTCGCGATCCGCGCCAGACTTGATGGAAGCTTGAA
GTCTTGTCGGGCTTACCTCTGCTGGAGCTTGTCAGGTTTACTTATGCTGC
GGGTCGTGATGAGAGAGATTTGCTAGCCTCGAACGCACGCCCTTCCTTTT
TTCTCTCCTGTAGTTTTAGGTTTTGCGTGGGATGAATAATGGTGCAATTT
CCAAAGCATTGTGATATGGAAACGTGACGCACCGAGTATTGTAGCATGTG
TGTCGGTTGGACTCATTTCAAACGCATCCAGCAGCCATGTGCCAAGCCCT
GTGCCTCAACGAAACCTCGTTCGCCTTCGAAGCTATGTAGAAAAGAAGGA
GATGTGTCGCAAGTGTGGGTTCGTCTTCTACCATTAGAACCGGCCTGCTG
TAGCTTTTTCCCTGGCCTCAAGGAATGGGCCCACAACATTTAGCGCAGAT
TTTCGTGCTTGGCCTTTTGTGAGCTGAACCCTCCAACCCCCACCCCCATG
CCCCGTTCCCCTCCGAACCCCTTTCGCAGAACGTTCAATTGAAGCACACC
CTCGTTTCCGGGGTTCAGGCGTACCTCCAGCCTACGGATGGCATCAAGAC
GGCGTACACGGTCTCGTGCGTGCGATGGAATCCGGCAAACGAAGAGCAGG
TGAGTCCGTCGGTGGGCACCGCCTTTTCTTACCGGAGTGTCGCCGCTGCC
CAAGTTGAAGGACCATTTAGTTGAAAGATCATGCTTCTCGGATCGGTATT
TGAAATGCATGCATTATTTACTTACCCAAGCGCGGATATTTGGCGGAAAG
TCTTTGAGACTTTTTTTTGCACGGTAAGCTGCTCCCTGTCCCGCTGAAAC
ATGATATCTCTGTCTCTGTCTCTCTCTTTATCTCTCTCTCTCTCTCTCGC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCCCCCCGTTTCTCTCTCTT
TGCTCGTGGTTGACGATCAACAGCTGGCTGTCAGCTACCATTACCACGAC
GAAGTAGAGGTGTACGACCTCATGACTATCGAAGCCGGCGGTTCAGCCAA
GCCGGTGCTGACCCTCAAACCCAGCACCACGGGCCCCGCGTCTGATTTGG
GGAAGGGCCACTTCTGCCTGGAGTTCGTGAGGAGAGGGGCCCCGGGCAAG
GCCGTCACGCACCTGGTTGCGGGGAGCAGGGGGGGGGTCTTTCGCGTGTG
GCGGTTTTTCCCGAAGAGGGCAACGGAGCTCGCGCCGTTCATGCAGGCGA
GAAGAGCAGACCGGGCGTGAGCGAGTATGTAGCCCCCAAACCCTAAACCT
TGTTCGAACGGGCGTGGTAGGACGTCGTGTCCTCTCTTCTGGCCTTGACA
AAAGCCGTATGTACACAAGGAGAGTATGTATGTATTTACACGAAAAATAA
TCCCAGGAATCCCAGGTCTGGAATCAACAAGTGCCGGGGACATGCAGACA
CTCACGGAAAAGATGCAGCGCCCTGGGTGCTCCCAGCACATTTTTCCTGC
CCCCCGCCGGGGGTGGGTACCTACCGTGTGGGTGTTGGTTGAACGCTGTA
CTGGGAAGGTTTTGCCCTGACCGTACTAACTCGGCATCCCATGCACTCGA
ATGGAAATCGTCTTCTCTGTGCCCGCATCTCCCTCGCAAGGGCTGTTTCG
GACTCCCAGTCAACGACCGAGCCTTCGGTAGCCAGTCCCTGCCAGACGCC
ATACCATACACAACTGACTTCCCAACCTCGTCTCGGCGTTGTTGCCCTTT
TTTTTTTCCAGGGTCAGGTGAGCGTGTCGCCCAGGGGGGCAGCATCCCGC
GCCAATGTGACCGCCGTCTGTTGCCTCGACCCGGACGTCGTGCTCGTGGG
CACGGACTTGGGCCACCTCGCCAGCTACTCCCTCGACCCTCCTAAACTAA
AAAACTTCCGGTCCTCCAAGGAGGCTGACCAGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig53:19408..21690-

>mRNA_L-elsbetiae_contig53.13450.1 ID=mRNA_L-elsbetiae_contig53.13450.1|Name=mRNA_L-elsbetiae_contig53.13450.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1530bp|location=Sequence derived from alignment at L-elsbetiae_contig53:19408..21690- (Laminarionema elsbetiae ELsaHSoW15)
CAGCGGCTGAGACTGGGGCGCACGACCAACTCGCGCATAGGGGCGGGGGT
CGCGCGGGGTCTCCCGGAGAGCCAGGGCGGCGTCCATGGGCGAGTGGCCG
GCGGTGTCTCGTGCATGGAGTTCGATTCCCAGGGCTGGCAGCTGGCGGTG
GCGGGAGAGAAGAGCGTGACGGTGTACGACTTCGACACGTACGTTTTTGA
GCAGCGGCTGAGACTGGGGCGCACGACCAACTCGCGCATAGGGGCGGGGG
TCGCGCGGGGTCTCCCGGAGAGCCAGGGCGGCGTCCATGGGCGAGTGGCC
GGCGGTGTCTCGTGCATGGAGTTCGATTCCCAGGGCTGGCAGCTGGCGGT
GGCGGGAGAGAAGAGCGTGACGGTGTACGACTTCGACACGTACGTTTTTG
AGAACGTTCAATTGAAGCACACCCTCGTTTCCGGGGTTCAGGCGTACCTC
CAGCCTACGGATGGCATCAAGACGGCGTACACGGTCTCGTGCGTGCGATG
GAATCCGGCAAACGAAGAGCAGAACGTTCAATTGAAGCACACCCTCGTTT
CCGGGGTTCAGGCGTACCTCCAGCCTACGGATGGCATCAAGACGGCGTAC
ACGGTCTCGTGCGTGCGATGGAATCCGGCAAACGAAGAGCAGCTGGCTGT
CAGCTACCATTACCACGACGAAGTAGAGGTGTACGACCTCATGACTATCG
AAGCCGGCGGTTCAGCCAAGCCGGTGCTGACCCTCAAACCCAGCACCACG
GGCCCCGCGTCTGATTTGGGGAAGGGCCACTTCTGCCTGGAGTTCGTGAG
GAGAGGGGCCCCGGGCAAGGCCGTCACGCACCTGGTTGCGGGGAGCAGGG
GGGGGGTCTTTCGCGTGTGGCGGTTTTTCCCGAAGAGGGCAACGGAGCTC
GCGCCGTTCATGCAGCTGGCTGTCAGCTACCATTACCACGACGAAGTAGA
GGTGTACGACCTCATGACTATCGAAGCCGGCGGTTCAGCCAAGCCGGTGC
TGACCCTCAAACCCAGCACCACGGGCCCCGCGTCTGATTTGGGGAAGGGC
CACTTCTGCCTGGAGTTCGTGAGGAGAGGGGCCCCGGGCAAGGCCGTCAC
GCACCTGGTTGCGGGGAGCAGGGGGGGGGTCTTTCGCGTGTGGCGGTTTT
TCCCGAAGAGGGCAACGGAGCTCGCGCCGTTCATGCAGGGTCAGGTGAGC
GTGTCGCCCAGGGGGGCAGCATCCCGCGCCAATGTGACCGCCGTCTGTTG
CCTCGACCCGGACGTCGTGCTCGTGGGCACGGACTTGGGCCACCTCGCCA
GCTACTCCCTCGACCCTCCTAAACTAAAAAACTTCCGGTCCTCCAAGGAG
GCTGACCAGGGTCAGGTGAGCGTGTCGCCCAGGGGGGCAGCATCCCGCGC
CAATGTGACCGCCGTCTGTTGCCTCGACCCGGACGTCGTGCTCGTGGGCA
CGGACTTGGGCCACCTCGCCAGCTACTCCCTCGACCCTCCTAAACTAAAA
AACTTCCGGTCCTCCAAGGAGGCTGACCAG
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