mRNA_L-elsbetiae_contig53.13449.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig53.13449.1
Unique NamemRNA_L-elsbetiae_contig53.13449.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig53.13449.1 vs. uniprot
Match: A0A6H5JZC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZC0_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 1.020e-46
Identity = 85/115 (73.91%), Postives = 93/115 (80.87%), Query Frame = -1 
Query:   19 GTTRCPRKAGMRPGPGWEVGEVGGGGFRIEESKGYDLCLPVEVAAATPGRSRVRLSKDVRGYLCPRAQERLLRSRLVTSSIMIGGEKHSVEAVSADGTVLVLDRKYRGPAVAGPP 363
            G  R  R +G+RPG GWE+G  GGGGFR+EES GYDLCLPV V  ATPGR RVRLS DVRGYLCPR + RLLRS LVTSSI IG E+HSVEA++ DGTVLVLDRKYRGPAVA  P
Sbjct:  847 GAKRPTRISGLRPGRGWEIGAAGGGGFRLEESGGYDLCLPVGVVEATPGRRRVRLSADVRGYLCPRDEGRLLRSGLVTSSIKIGAERHSVEAITGDGTVLVLDRKYRGPAVATEP 961
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BLAST of mRNA_L-elsbetiae_contig53.13449.1 vs. uniprot
Match: D7FXV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV0_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.280e-15
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = -1 
Query:  208 DRGTTRCPRKAGMRPGPGWEVGEVGGGGFRIEESKGYDLCLPVEVAAATPGRSR 369
            DRGT R  RK+G+RPG GWE+G  GGGGF +EES+GYDLCLPV V  A PGR R
Sbjct:  641 DRGTKRPRRKSGLRPGRGWEIGAAGGGGFLLEESEGYDLCLPVGVVEANPGRRR 694
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig53.13449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZC0_9PHAE1.020e-4673.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXV0_ECTSI1.280e-1568.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig53contigL-elsbetiae_contig53:18521..18935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size416
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816547.6573474-CDS-L-elsbetiae_contig53:18520..189341622816547.6573474-CDS-L-elsbetiae_contig53:18520..18934Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig53 18521..18934 +
1691683638.6282983-CDS-L-elsbetiae_contig53:18520..189341691683638.6282983-CDS-L-elsbetiae_contig53:18520..18934Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig53 18521..18934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig53.13449.1prot_L-elsbetiae_contig53.13449.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig53 18521..18934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig53.13449.1

>prot_L-elsbetiae_contig53.13449.1 ID=prot_L-elsbetiae_contig53.13449.1|Name=mRNA_L-elsbetiae_contig53.13449.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp
SSTFTSRRSSHSRAPVLPVQDQHRAVGTHGLHRVLLSPDHDRRGHKAASQ
QPLLGAGTQVPAHVLREPHPTPPGGCRRHFHGQAQVVPLGLLYAEPPAPD
LADFPPGARPHPRFARTPRGAPVLPTPAGVQRSPRRRR
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mRNA from alignment at L-elsbetiae_contig53:18521..18935+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig53.13449.1 ID=mRNA_L-elsbetiae_contig53.13449.1|Name=mRNA_L-elsbetiae_contig53.13449.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=415bp|location=Sequence derived from alignment at L-elsbetiae_contig53:18521..18935+ (Laminarionema elsbetiae ELsaHSoW15)
TCGTCCACCTTCACGAGCCGGCGGTCCAGCCACAGCAGGGCCCCGGTACT
TCCGGTCCAAGACCAGCACCGTGCCGTCGGCACTCACGGCCTCCACCGAG
TGCTTCTCTCCCCCGATCATGATCGACGAGGTCACAAGGCGGCTTCTCAG
CAGCCGCTCCTGGGCGCGGGGACACAGGTACCCGCGCACGTCCTTCGAGA
GCCGCACCCTACTCCGCCCGGGGGTTGCCGCCGCCACTTCCACGGGCAGG
CACAGGTCGTACCCCTTGGACTCCTCTATGCGGAACCCCCCGCCCCCGAC
CTCGCCGACTTCCCACCCGGGGCCCGGCCTCATCCCCGCTTTGCGCGGAC
ACCTCGTGGTGCCCCTGTCCTGCCGACGCCCGCAGGAGTCCAGCGCAGCC
CGCGCCGACGTCGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig53:18521..18935+

>mRNA_L-elsbetiae_contig53.13449.1 ID=mRNA_L-elsbetiae_contig53.13449.1|Name=mRNA_L-elsbetiae_contig53.13449.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig53:18521..18935+ (Laminarionema elsbetiae ELsaHSoW15)
TCGTCCACCTTCACGAGCCGGCGGTCCAGCCACAGCAGGGCCCCGGTACT
TCCGGTCCAAGACCAGCACCGTGCCGTCGGCACTCACGGCCTCCACCGAG
TGCTTCTCTCCCCCGATCATGATCGACGAGGTCACAAGGCGGCTTCTCAG
CAGCCGCTCCTGGGCGCGGGGACACAGGTACCCGCGCACGTCCTTCGAGA
GCCGCACCCTACTCCGCCCGGGGGTTGCCGCCGCCACTTCCACGGGCAGG
CACAGGTCGTACCCCTTGGACTCCTCTATGCGGAACCCCCCGCCCCCGAC
CTCGCCGACTTCCCACCCGGGGCCCGGCCTCATCCCCGCTTTGCGCGGAC
ACCTCGTGGTGCCCCTGTCCTGCCGACGCCCGCAGGAGTCCAGCGCAGCC
CGCGCCGACGTCGCTCGTCCACCTTCACGAGCCGGCGGTCCAGCCACAGC
AGGGCCCCGGTACTTCCGGTCCAAGACCAGCACCGTGCCGTCGGCACTCA
CGGCCTCCACCGAGTGCTTCTCTCCCCCGATCATGATCGACGAGGTCACA
AGGCGGCTTCTCAGCAGCCGCTCCTGGGCGCGGGGACACAGGTACCCGCG
CACGTCCTTCGAGAGCCGCACCCTACTCCGCCCGGGGGTTGCCGCCGCCA
CTTCCACGGGCAGGCACAGGTCGTACCCCTTGGACTCCTCTATGCGGAAC
CCCCCGCCCCCGACCTCGCCGACTTCCCACCCGGGGCCCGGCCTCATCCC
CGCTTTGCGCGGACACCTCGTGGTGCCCCTGTCCTGCCGACGCCCGCAGG
AGTCCAGCGCAGCCCGCGCCGACGTCGC
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