mRNA_L-elsbetiae_contig5296.13444.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5296.13444.1
Unique NamemRNA_L-elsbetiae_contig5296.13444.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5296.13444.1 vs. uniprot
Match: A0A6H5LDR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDR5_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 9.940e-17
Identity = 41/58 (70.69%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:  157 WATDVGGSGGTFAESSLWADSDPEWRGAPPVGSDALYELNMQLAAYAKDGQWEMAIML 330
            WA+   G    F   SLWADSDPEWR AP   SDAL+ELNMQLAAYAKD QWEMAIML
Sbjct:  152 WAS---GGAAAFTGPSLWADSDPEWRDAPRADSDALFELNMQLAAYAKDAQWEMAIML 206
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5296.13444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LDR5_9PHAE9.940e-1770.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5296contigL-elsbetiae_contig5296:7439..7768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-12_006140.1
Exons1
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816547.4409-CDS-L-elsbetiae_contig5296:7438..77681622816547.4409-CDS-L-elsbetiae_contig5296:7438..7768Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5296 7439..7768 +
1691683638.4930317-CDS-L-elsbetiae_contig5296:7438..77681691683638.4930317-CDS-L-elsbetiae_contig5296:7438..7768Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5296 7439..7768 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5296.13444.1prot_L-elsbetiae_contig5296.13444.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5296 7439..7768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5296.13444.1

>prot_L-elsbetiae_contig5296.13444.1 ID=prot_L-elsbetiae_contig5296.13444.1|Name=mRNA_L-elsbetiae_contig5296.13444.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
EEPNIDCNFEKRRRRRPWTTAATAAAAGGTTAGATRGDWVEQQEEPQEDG
AEWATDVGGSGGTFAESSLWADSDPEWRGAPPVGSDALYELNMQLAAYAK
DGQWEMAIML
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mRNA from alignment at L-elsbetiae_contig5296:7439..7768+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5296.13444.1 ID=mRNA_L-elsbetiae_contig5296.13444.1|Name=mRNA_L-elsbetiae_contig5296.13444.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig5296:7439..7768+ (Laminarionema elsbetiae ELsaHSoW15)
GAAGAACCCAACATCGACTGCAACTTCGAAAAGCGTCGCCGTCGCCGTCC
CTGGACGACAGCAGCAACTGCGGCGGCGGCGGGGGGGACGACAGCGGGAG
CAACAAGAGGCGACTGGGTCGAACAGCAGGAGGAGCCGCAAGAGGACGGA
GCGGAGTGGGCGACGGACGTCGGCGGCAGCGGTGGTACCTTCGCGGAGTC
CTCGCTCTGGGCCGACAGCGACCCCGAGTGGAGAGGCGCGCCCCCGGTGG
GGTCGGACGCGCTGTACGAGCTCAACATGCAGCTGGCGGCCTATGCCAAG
GACGGCCAGTGGGAGATGGCAATCATGCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5296:7439..7768+

>mRNA_L-elsbetiae_contig5296.13444.1 ID=mRNA_L-elsbetiae_contig5296.13444.1|Name=mRNA_L-elsbetiae_contig5296.13444.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig5296:7439..7768+ (Laminarionema elsbetiae ELsaHSoW15)
GAAGAACCCAACATCGACTGCAACTTCGAAAAGCGTCGCCGTCGCCGTCC
CTGGACGACAGCAGCAACTGCGGCGGCGGCGGGGGGGACGACAGCGGGAG
CAACAAGAGGCGACTGGGTCGAACAGCAGGAGGAGCCGCAAGAGGACGGA
GCGGAGTGGGCGACGGACGTCGGCGGCAGCGGTGGTACCTTCGCGGAGTC
CTCGCTCTGGGCCGACAGCGACCCCGAGTGGAGAGGCGCGCCCCCGGTGG
GGTCGGACGCGCTGTACGAGCTCAACATGCAGCTGGCGGCCTATGCCAAG
GACGGCCAGTGGGAGATGGCAATCATGCTCGAAGAACCCAACATCGACTG
CAACTTCGAAAAGCGTCGCCGTCGCCGTCCCTGGACGACAGCAGCAACTG
CGGCGGCGGCGGGGGGGACGACAGCGGGAGCAACAAGAGGCGACTGGGTC
GAACAGCAGGAGGAGCCGCAAGAGGACGGAGCGGAGTGGGCGACGGACGT
CGGCGGCAGCGGTGGTACCTTCGCGGAGTCCTCGCTCTGGGCCGACAGCG
ACCCCGAGTGGAGAGGCGCGCCCCCGGTGGGGTCGGACGCGCTGTACGAG
CTCAACATGCAGCTGGCGGCCTATGCCAAGGACGGCCAGTGGGAGATGGC
AATCATGCTC
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