mRNA_L-elsbetiae_contig5296.13443.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5296.13443.1
Unique NamemRNA_L-elsbetiae_contig5296.13443.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5296.13443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5296contigL-elsbetiae_contig5296:6738..7366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size630
Cds size606
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816547.3572066-UTR-L-elsbetiae_contig5296:6737..67601622816547.3572066-UTR-L-elsbetiae_contig5296:6737..6760Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5296 6738..6760 +
1691683638.434906-UTR-L-elsbetiae_contig5296:6737..67601691683638.434906-UTR-L-elsbetiae_contig5296:6737..6760Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5296 6738..6760 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816547.3675375-CDS-L-elsbetiae_contig5296:6760..73661622816547.3675375-CDS-L-elsbetiae_contig5296:6760..7366Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5296 6761..7366 +
1691683638.4455388-CDS-L-elsbetiae_contig5296:6760..73661691683638.4455388-CDS-L-elsbetiae_contig5296:6760..7366Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5296 6761..7366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5296.13443.1prot_L-elsbetiae_contig5296.13443.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5296 6761..7366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5296.13443.1

>prot_L-elsbetiae_contig5296.13443.1 ID=prot_L-elsbetiae_contig5296.13443.1|Name=mRNA_L-elsbetiae_contig5296.13443.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=202bp
MSEKLDPVAAPRRIGMGRRGGARNVTRILGVLGAGGAHKSLALLPTSTSG
FATSSASCSSRGVGHRRRAAREAGLRCFSRPEGAGCARRLRSAPSPRHSV
LLSRVDQAWPRRKQTSCRSSSLDSSGGGRGNLRNSSRSGSRITAGRRKRA
LAVGPLSPRSSFAGAGALSSAGSANKDDSKLSAVAVTAGIPIAGGTAATN
RR
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mRNA from alignment at L-elsbetiae_contig5296:6738..7366+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5296.13443.1 ID=mRNA_L-elsbetiae_contig5296.13443.1|Name=mRNA_L-elsbetiae_contig5296.13443.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=629bp|location=Sequence derived from alignment at L-elsbetiae_contig5296:6738..7366+ (Laminarionema elsbetiae ELsaHSoW15)
ACCACGCACGACAGACGAGCAACATGTCAGAAAAGCTTGACCCAGTGGCG
GCCCCTCGAAGAATAGGCATGGGCCGACGAGGAGGAGCACGTAACGTGAC
ACGGATTTTGGGGGTTCTGGGGGCCGGCGGCGCACACAAGAGCTTGGCCC
TGCTTCCAACATCAACATCAGGTTTCGCAACAAGTTCCGCGTCCTGCAGC
AGCAGAGGGGTAGGCCATCGTCGCCGTGCTGCTCGTGAGGCCGGGCTGCG
GTGTTTTTCGCGGCCCGAAGGAGCGGGTTGCGCGAGGAGATTACGTTCGG
CGCCGTCGCCAAGACATTCGGTGCTGTTGTCGCGCGTCGATCAGGCCTGG
CCTCGACGAAAACAGACTTCTTGCAGGAGCAGCAGCTTGGACAGCAGCGG
CGGCGGACGCGGAAATCTTAGGAACAGCAGTAGGTCTGGAAGTCGCATCA
CGGCCGGCAGACGAAAGCGGGCCTTGGCGGTAGGTCCACTCTCACCGCGG
TCTTCTTTTGCTGGCGCGGGGGCGCTTTCATCTGCGGGCTCGGCGAACAA
GGACGATTCGAAACTTTCCGCCGTCGCGGTAACGGCGGGGATTCCAATAG
CAGGAGGAACGGCAGCAACGAATCGGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5296:6738..7366+

>mRNA_L-elsbetiae_contig5296.13443.1 ID=mRNA_L-elsbetiae_contig5296.13443.1|Name=mRNA_L-elsbetiae_contig5296.13443.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1212bp|location=Sequence derived from alignment at L-elsbetiae_contig5296:6738..7366+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCAGAAAAGCTTGACCCAGTGGCGGCCCCTCGAAGAATAGGCATGGG
CCGACGAGGAGGAGCACGTAACGTGACACGGATTTTGGGGGTTCTGGGGG
CCGGCGGCGCACACAAGAGCTTGGCCCTGCTTCCAACATCAACATCAGGT
TTCGCAACAAGTTCCGCGTCCTGCAGCAGCAGAGGGGTAGGCCATCGTCG
CCGTGCTGCTCGTGAGGCCGGGCTGCGGTGTTTTTCGCGGCCCGAAGGAG
CGGGTTGCGCGAGGAGATTACGTTCGGCGCCGTCGCCAAGACATTCGGTG
CTGTTGTCGCGCGTCGATCAGGCCTGGCCTCGACGAAAACAGACTTCTTG
CAGGAGCAGCAGCTTGGACAGCAGCGGCGGCGGACGCGGAAATCTTAGGA
ACAGCAGTAGGTCTGGAAGTCGCATCACGGCCGGCAGACGAAAGCGGGCC
TTGGCGGTAGGTCCACTCTCACCGCGGTCTTCTTTTGCTGGCGCGGGGGC
GCTTTCATCTGCGGGCTCGGCGAACAAGGACGATTCGAAACTTTCCGCCG
TCGCGGTAACGGCGGGGATTCCAATAGCAGGAGGAACGGCAGCAACGAAT
CGGCGGATGTCAGAAAAGCTTGACCCAGTGGCGGCCCCTCGAAGAATAGG
CATGGGCCGACGAGGAGGAGCACGTAACGTGACACGGATTTTGGGGGTTC
TGGGGGCCGGCGGCGCACACAAGAGCTTGGCCCTGCTTCCAACATCAACA
TCAGGTTTCGCAACAAGTTCCGCGTCCTGCAGCAGCAGAGGGGTAGGCCA
TCGTCGCCGTGCTGCTCGTGAGGCCGGGCTGCGGTGTTTTTCGCGGCCCG
AAGGAGCGGGTTGCGCGAGGAGATTACGTTCGGCGCCGTCGCCAAGACAT
TCGGTGCTGTTGTCGCGCGTCGATCAGGCCTGGCCTCGACGAAAACAGAC
TTCTTGCAGGAGCAGCAGCTTGGACAGCAGCGGCGGCGGACGCGGAAATC
TTAGGAACAGCAGTAGGTCTGGAAGTCGCATCACGGCCGGCAGACGAAAG
CGGGCCTTGGCGGTAGGTCCACTCTCACCGCGGTCTTCTTTTGCTGGCGC
GGGGGCGCTTTCATCTGCGGGCTCGGCGAACAAGGACGATTCGAAACTTT
CCGCCGTCGCGGTAACGGCGGGGATTCCAATAGCAGGAGGAACGGCAGCA
ACGAATCGGCGG
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