mRNA_L-elsbetiae_contig5292.13435.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5292.13435.1
Unique NamemRNA_L-elsbetiae_contig5292.13435.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5292.13435.1 vs. uniprot
Match: A0A6H5KE84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE84_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 2.260e-46
Identity = 72/82 (87.80%), Postives = 74/82 (90.24%), Query Frame = 2
Query:    2 VFGPGFRLRLPFPRLSPGPGHRWFNSHPLGGDPDLRDFQAWARTMLRRRLVHPRDADAWRAAFVDVEGGGHGQLVVSAADET 247
            VF  G+RLRLPFPRL  GPGHRWFNSH LGGDPDL DFQAWARTMLRR LVHPRDADAWRAA VDV+GGGHGQLVVSAADET
Sbjct:   59 VFRTGYRLRLPFPRLPAGPGHRWFNSHQLGGDPDLIDFQAWARTMLRRGLVHPRDADAWRAALVDVQGGGHGQLVVSAADET 140          
BLAST of mRNA_L-elsbetiae_contig5292.13435.1 vs. uniprot
Match: A0A6H5KTC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC4_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 2.500e-46
Identity = 78/85 (91.76%), Postives = 79/85 (92.94%), Query Frame = 2
Query:    2 VFGPGFRLRLPFPRLSPGPGHRWFNSHPLGGDPDLRDFQAWARTMLRRRLVHPRDADAWRAAFVDVEGGGHGQLVVSAADETVRL 256
            VFG GFRL LPFPRL PGPGHRWFNSHPLGGDPDL DFQAWARTMLRRRLVHPRDADAWRAAFVDVEG GHGQLVVSAADET R+
Sbjct:   58 VFGAGFRLHLPFPRLPPGPGHRWFNSHPLGGDPDLPDFQAWARTMLRRRLVHPRDADAWRAAFVDVEGSGHGQLVVSAADETWRV 142          
BLAST of mRNA_L-elsbetiae_contig5292.13435.1 vs. uniprot
Match: D8LFQ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFQ2_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 1.190e-45
Identity = 78/85 (91.76%), Postives = 79/85 (92.94%), Query Frame = 2
Query:    2 VFGPGFRLRLPFPRLSPGPGHRWFNSHPLGGDPDLRDFQAWARTMLRRRLVHPRDADAWRAAFVDVEGGGHGQLVVSAADETVRL 256
            VFG GFRLRLPFPRL PGPGHRWFNSHPLGGDPDL DFQAWARTMLRRRLVH  DADAWRAAFVDVEGGGHGQLVVSAADET R+
Sbjct:   60 VFGAGFRLRLPFPRLCPGPGHRWFNSHPLGGDPDLPDFQAWARTMLRRRLVHRDDADAWRAAFVDVEGGGHGQLVVSAADETWRV 144          
BLAST of mRNA_L-elsbetiae_contig5292.13435.1 vs. uniprot
Match: A0A6H5L8I4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8I4_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 4.820e-37
Identity = 73/103 (70.87%), Postives = 77/103 (74.76%), Query Frame = 2
Query:    2 VFGPGFRLRLPFPRLSPGPGHRWFNSHPLGGDPDLRDFQAWARTMLRRRLVHPRDADAWRAAFVDVEGGGHGQLVVSAADETVRLDVVVSDVLLFVHAPVHGQ 310
            VFG G+RLRLP  R+ P PGHRWFNSHP GGDPDLRDFQA A TML R LVHPRDADAWR A VDVEGGG GQLVVSA DET R  +  S V L V A V  +
Sbjct:   37 VFGAGYRLRLPLHRVYPVPGHRWFNSHPFGGDPDLRDFQALAGTMLCRGLVHPRDADAWRVAIVDVEGGGLGQLVVSAVDETWRHGIPTSLVGLQVRAGVASE 139          
BLAST of mRNA_L-elsbetiae_contig5292.13435.1 vs. uniprot
Match: A0A6H5K6B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B4_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 4.430e-36
Identity = 65/102 (63.73%), Postives = 79/102 (77.45%), Query Frame = 2
Query:    2 VFGPGFRLRLPFPRLSPGPGHRWFNSHPLGGDPDLRDFQAWARTMLRRRLVHPRDADAWRAAFVDVEGGGHGQLVVSAADETVRLDVVVSDVLLFVHAPVHG 307
            VFG GFR+R+ F   SPGPGHRWFNSHPLGGDP+L +FQ WART+L+R +VHPR+A+AWR AFVDVEGGG GQLVVSAAD+T R+ +  +     +    HG
Sbjct:   54 VFGTGFRIRISF-ASSPGPGHRWFNSHPLGGDPNLYNFQTWARTVLQRGMVHPREAEAWRTAFVDVEGGGLGQLVVSAADDTWRVILCWASAGRRIDVDTHG 154          
BLAST of mRNA_L-elsbetiae_contig5292.13435.1 vs. uniprot
Match: A0A6H5JU52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU52_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 3.360e-34
Identity = 58/80 (72.50%), Postives = 70/80 (87.50%), Query Frame = 2
Query:   17 FRLRLPFPRLSPGPGHRWFNSHPLGGDPDLRDFQAWARTMLRRRLVHPRDADAWRAAFVDVEGGGHGQLVVSAADETVRL 256
            FR+R+ FP  SPGPG+RWF+SHPLGGDP+L +FQ W RT+L+R +VHPRDA+AWR AFVDVEGGG GQLVVSAADE+ R+
Sbjct:   79 FRVRISFPS-SPGPGYRWFHSHPLGGDPNLYNFQTWTRTVLQRGMVHPRDAEAWRTAFVDVEGGGLGQLVVSAADESWRV 157          
BLAST of mRNA_L-elsbetiae_contig5292.13435.1 vs. uniprot
Match: D7FQN9_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7FQN9_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 4.440e-34
Identity = 62/85 (72.94%), Postives = 74/85 (87.06%), Query Frame = 2
Query:    2 VFGPGFRLRLPFPRLSPGPGHRWFNSHPLGGDPDLRDFQAWARTMLRRRLVHPRDADAWRAAFVDVEGGGHGQLVVSAADETVRL 256
            VFG GFR+R+ FP  SPGPG+RWFNSHPLGGDP+L +FQ WART+L+  +VHPRDA+AWR AFV+VEGGG GQLVVSAADE+ R+
Sbjct:   53 VFGTGFRVRISFPS-SPGPGYRWFNSHPLGGDPNLYNFQTWARTVLQGGMVHPRDAEAWRTAFVEVEGGGLGQLVVSAADESWRV 136          
BLAST of mRNA_L-elsbetiae_contig5292.13435.1 vs. uniprot
Match: A0A6H5JCS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS9_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 2.920e-33
Identity = 60/85 (70.59%), Postives = 70/85 (82.35%), Query Frame = 2
Query:    2 VFGPGFRLRLPFPRLSPGPGHRWFNSHPLGGDPDLRDFQAWARTMLRRRLVHPRDADAWRAAFVDVEGGGHGQLVVSAADETVRL 256
            VFG G+R+R+ FP  S GPGH WFNSHP+GGDP+L  FQ WAR +L R +VHPRDA+AWR AFVDVEGGG GQLVVS+ADET R+
Sbjct:   53 VFGTGYRIRISFPS-SAGPGHTWFNSHPVGGDPNLYSFQTWARMVLERGMVHPRDAEAWRTAFVDVEGGGQGQLVVSSADETWRV 136          
BLAST of mRNA_L-elsbetiae_contig5292.13435.1 vs. uniprot
Match: A0A6H5KMS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMS8_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 2.070e-31
Identity = 58/81 (71.60%), Postives = 71/81 (87.65%), Query Frame = 2
Query:   14 GFRLRLPFPRLSPGPGHRWFNSHPLGGDPDLRDFQAWARTMLRRRLVHPRDADAWRAAFVDVEGGGHGQLVVSAADETVRL 256
            G+R+R+ FP  SPGPG+RWFNSHPLGGDP+L +FQ WART+L+  +VHPRDA+AWR AFV+VEGGG GQLVVSAADE+ R+
Sbjct:   37 GWRVRISFPS-SPGPGYRWFNSHPLGGDPNLYNFQTWARTVLQGGMVHPRDAEAWRTAFVEVEGGGLGQLVVSAADESWRV 116          
BLAST of mRNA_L-elsbetiae_contig5292.13435.1 vs. uniprot
Match: A0A6H5L8Q0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8Q0_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.040e-30
Identity = 50/72 (69.44%), Postives = 59/72 (81.94%), Query Frame = 2
Query:    2 VFGPGFRLRLPFPRLSPGPGHRWFNSHPLGGDPDLRDFQAWARTMLRRRLVHPRDADAWRAAFVDVEGGGHG 217
            VFG GFR+R+ FP  SPG  HRWFN HPLGGDP+L +FQ WART+L+R ++HPRDA+AWR A VDVEGGG G
Sbjct:   13 VFGTGFRIRISFPS-SPGREHRWFNPHPLGGDPNLYNFQTWARTVLQRGMIHPRDAEAWRTALVDVEGGGVG 83          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5292.13435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KE84_9PHAE2.260e-4687.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTC4_9PHAE2.500e-4691.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFQ2_ECTSI1.190e-4591.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L8I4_9PHAE4.820e-3770.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6B4_9PHAE4.430e-3663.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU52_9PHAE3.360e-3472.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQN9_ECTSI4.440e-3472.94Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JCS9_9PHAE2.920e-3370.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMS8_9PHAE2.070e-3171.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8Q0_9PHAE2.040e-3069.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5292contigL-elsbetiae_contig5292:431..892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size464
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816546.8407369-CDS-L-elsbetiae_contig5292:430..7961622816546.8407369-CDS-L-elsbetiae_contig5292:430..796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5292 431..796 +
1691683638.1000426-CDS-L-elsbetiae_contig5292:430..7961691683638.1000426-CDS-L-elsbetiae_contig5292:430..796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5292 431..796 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816546.8525274-UTR-L-elsbetiae_contig5292:796..8921622816546.8525274-UTR-L-elsbetiae_contig5292:796..892Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5292 797..892 +
1691683638.1104174-UTR-L-elsbetiae_contig5292:796..8921691683638.1104174-UTR-L-elsbetiae_contig5292:796..892Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5292 797..892 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5292.13435.1prot_L-elsbetiae_contig5292.13435.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5292 431..796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5292.13435.1

>prot_L-elsbetiae_contig5292.13435.1 ID=prot_L-elsbetiae_contig5292.13435.1|Name=mRNA_L-elsbetiae_contig5292.13435.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
GLRARVPPPPAVPPPLPGAGAPLVQLAPARRGSRPPGLPGLGEDDAAQAP
GAPARRRRLAGGLRRRRGRRTRTARRLRRRRDCPSRCSSIRRFVIRTCSG
TWADCWVMHLDTEVVSNIYVD*
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mRNA from alignment at L-elsbetiae_contig5292:431..892+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5292.13435.1 ID=mRNA_L-elsbetiae_contig5292.13435.1|Name=mRNA_L-elsbetiae_contig5292.13435.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=462bp|location=Sequence derived from alignment at L-elsbetiae_contig5292:431..892+ (Laminarionema elsbetiae ELsaHSoW15)
GGTCTTCGGGCCCGGGTTCCGCCTCCGCCTGCCGTTCCCCCGCCTCTCCC CGGGGCCGGGGCACCGCTGGTTCAACTCGCACCCGCTCGGCGGGGATCCC GACCTCCGGGACTTCCAGGCCTGGGCGAGGACGATGCTGCGCAGGCGCCT GGTGCACCCGCGCGACGCCGACGCCTGGCGGGCGGCCTTCGTCGACGTAG AGGGCGGCGGACACGGACAGCTCGTCGTCTCCGCCGCCGACGAGACTGTC CGTCTAGATGTAGTAGTATCCGACGTTTTGTTATTCGTACATGCTCCGGT ACATGGGCAGATTGTTGGGTGATGCATCTTGATACGGAGGTCGTCTCTAA TATATATGTAGACTAGAAGAGTGTTTGTTTCTCTTTTATTGTTATCACTC ACTCAGGCTTGAAGCCCACTTTGACACATCGGGGTGTCAATACGAGGGCA AGCACACCCGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5292:431..892+

>mRNA_L-elsbetiae_contig5292.13435.1 ID=mRNA_L-elsbetiae_contig5292.13435.1|Name=mRNA_L-elsbetiae_contig5292.13435.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig5292:431..892+ (Laminarionema elsbetiae ELsaHSoW15)
GGTCTTCGGGCCCGGGTTCCGCCTCCGCCTGCCGTTCCCCCGCCTCTCCC
CGGGGCCGGGGCACCGCTGGTTCAACTCGCACCCGCTCGGCGGGGATCCC
GACCTCCGGGACTTCCAGGCCTGGGCGAGGACGATGCTGCGCAGGCGCCT
GGTGCACCCGCGCGACGCCGACGCCTGGCGGGCGGCCTTCGTCGACGTAG
AGGGCGGCGGACACGGACAGCTCGTCGTCTCCGCCGCCGACGAGACTGTC
CGTCTAGATGTAGTAGTATCCGACGTTTTGTTATTCGTACATGCTCCGGT
ACATGGGCAGATTGTTGGGTGATGCATCTTGATACGGAGGTCGTCTCTAA
TATATATGTAGACTAGGGTCTTCGGGCCCGGGTTCCGCCTCCGCCTGCCG
TTCCCCCGCCTCTCCCCGGGGCCGGGGCACCGCTGGTTCAACTCGCACCC
GCTCGGCGGGGATCCCGACCTCCGGGACTTCCAGGCCTGGGCGAGGACGA
TGCTGCGCAGGCGCCTGGTGCACCCGCGCGACGCCGACGCCTGGCGGGCG
GCCTTCGTCGACGTAGAGGGCGGCGGACACGGACAGCTCGTCGTCTCCGC
CGCCGACGAGACTGTCCGTCTAGATGTAGTAGTATCCGACGTTTTGTTAT
TCGTACATGCTCCGGTACATGGGCAGATTGTTGGGTGATGCATCTTGATA
CGGAGGTCGTCTCTAATATATATGTAGACTAG
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