mRNA_L-elsbetiae_contig5290.13432.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5290.13432.1
Unique NamemRNA_L-elsbetiae_contig5290.13432.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5290.13432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5290contigL-elsbetiae_contig5290:11165..11533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size371
Cds size348
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816546.7045455-UTR-L-elsbetiae_contig5290:11164..111851622816546.7045455-UTR-L-elsbetiae_contig5290:11164..11185Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5290 11165..11185 +
1691683638.0187743-UTR-L-elsbetiae_contig5290:11164..111851691683638.0187743-UTR-L-elsbetiae_contig5290:11164..11185Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5290 11165..11185 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816546.7163727-CDS-L-elsbetiae_contig5290:11185..115331622816546.7163727-CDS-L-elsbetiae_contig5290:11185..11533Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5290 11186..11533 +
1691683638.0320275-CDS-L-elsbetiae_contig5290:11185..115331691683638.0320275-CDS-L-elsbetiae_contig5290:11185..11533Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5290 11186..11533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5290.13432.1prot_L-elsbetiae_contig5290.13432.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5290 11186..11533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5290.13432.1

>prot_L-elsbetiae_contig5290.13432.1 ID=prot_L-elsbetiae_contig5290.13432.1|Name=mRNA_L-elsbetiae_contig5290.13432.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
MGAWPSWRLGRDEDTGRRTADEDMVIVEGKSPSPPRAFGAATTRPPATAT
SIASSSNSLTANTISASWTRRTTSPWPRASESNTPGLRISEGGRSATSEQ
TQLGEARVHPVTDVGS
back to top

mRNA from alignment at L-elsbetiae_contig5290:11165..11533+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5290.13432.1 ID=mRNA_L-elsbetiae_contig5290.13432.1|Name=mRNA_L-elsbetiae_contig5290.13432.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=369bp|location=Sequence derived from alignment at L-elsbetiae_contig5290:11165..11533+ (Laminarionema elsbetiae ELsaHSoW15)
AGAAGGAGAGGGAGCGCGAGTATGGGGGCGTGGCCTTCATGGCGGCTGGG
CAGGGACGAGGACACCGGGAGAAGAACGGCGGACGAGGACATGGTCATCG
TCGAGGGGAAATCACCATCCCCTCCGCGCGCGTTTGGTGCAGCCACCACC
AGACCGCCAGCCACAGCGACGTCGATTGCGAGCAGCAGCAACTCGCTCAC
CGCCAATACCATCTCCGCGAGCTGGACAAGGCGCACCACATCGCCATGGC
CGCGGGCCTCCGAGAGCAATACCCCCGGCCTGAGGATCAGCGAGGGCGGC
AGGAGCGCAACCTCGGAGCAGACGCAGCTTGGGGAGGCGCGAGTGCACCC
CGTCACGGACGTGGGCAGT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5290:11165..11533+

>mRNA_L-elsbetiae_contig5290.13432.1 ID=mRNA_L-elsbetiae_contig5290.13432.1|Name=mRNA_L-elsbetiae_contig5290.13432.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig5290:11165..11533+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGGCGTGGCCTTCATGGCGGCTGGGCAGGGACGAGGACACCGGGAG
AAGAACGGCGGACGAGGACATGGTCATCGTCGAGGGGAAATCACCATCCC
CTCCGCGCGCGTTTGGTGCAGCCACCACCAGACCGCCAGCCACAGCGACG
TCGATTGCGAGCAGCAGCAACTCGCTCACCGCCAATACCATCTCCGCGAG
CTGGACAAGGCGCACCACATCGCCATGGCCGCGGGCCTCCGAGAGCAATA
CCCCCGGCCTGAGGATCAGCGAGGGCGGCAGGAGCGCAACCTCGGAGCAG
ACGCAGCTTGGGGAGGCGCGAGTGCACCCCGTCACGGACGTGGGCAGTAT
GGGGGCGTGGCCTTCATGGCGGCTGGGCAGGGACGAGGACACCGGGAGAA
GAACGGCGGACGAGGACATGGTCATCGTCGAGGGGAAATCACCATCCCCT
CCGCGCGCGTTTGGTGCAGCCACCACCAGACCGCCAGCCACAGCGACGTC
GATTGCGAGCAGCAGCAACTCGCTCACCGCCAATACCATCTCCGCGAGCT
GGACAAGGCGCACCACATCGCCATGGCCGCGGGCCTCCGAGAGCAATACC
CCCGGCCTGAGGATCAGCGAGGGCGGCAGGAGCGCAACCTCGGAGCAGAC
GCAGCTTGGGGAGGCGCGAGTGCACCCCGTCACGGACGTGGGCAGT
back to top