mRNA_L-elsbetiae_contig5288.13424.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5288.13424.1
Unique NamemRNA_L-elsbetiae_contig5288.13424.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5288.13424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5288contigL-elsbetiae_contig5288:663..2148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue2.8e-07
Seed eggNOG ortholog2880.D7FLY1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.function. Source PGD
EggNOG OGs29J8N@1,2RSGS@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size461
Cds size459
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5288.13424.1prot_L-elsbetiae_contig5288.13424.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5288 663..2147 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816546.119719-CDS-L-elsbetiae_contig5288:662..6891622816546.119719-CDS-L-elsbetiae_contig5288:662..689Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5288 663..689 +
1691683637.6502378-CDS-L-elsbetiae_contig5288:662..6891691683637.6502378-CDS-L-elsbetiae_contig5288:662..689Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5288 663..689 +
1622816546.1331847-CDS-L-elsbetiae_contig5288:1276..15941622816546.1331847-CDS-L-elsbetiae_contig5288:1276..1594Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5288 1277..1594 +
1691683637.6615703-CDS-L-elsbetiae_contig5288:1276..15941691683637.6615703-CDS-L-elsbetiae_contig5288:1276..1594Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5288 1277..1594 +
1622816546.1450095-CDS-L-elsbetiae_contig5288:2033..21471622816546.1450095-CDS-L-elsbetiae_contig5288:2033..2147Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5288 2034..2147 +
1691683637.6704571-CDS-L-elsbetiae_contig5288:2033..21471691683637.6704571-CDS-L-elsbetiae_contig5288:2033..2147Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5288 2034..2147 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5288.13424.1

>prot_L-elsbetiae_contig5288.13424.1 ID=prot_L-elsbetiae_contig5288.13424.1|Name=mRNA_L-elsbetiae_contig5288.13424.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
GSKPIEYRKLPQYLVDHEELFVEYTEWERKRERKRRRTLAAEQSRETELE
RKREVARRQQEERLQGPKKRQRRAVELPGERRVWEFLKGEKGWKFRGGWD
VIGPDKGSKAMTQAQLPWFMVDDPDLMKEYCTVIGSWPATSVERLRMARP
AAA
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mRNA from alignment at L-elsbetiae_contig5288:663..2148+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5288.13424.1 ID=mRNA_L-elsbetiae_contig5288.13424.1|Name=mRNA_L-elsbetiae_contig5288.13424.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1486bp|location=Sequence derived from alignment at L-elsbetiae_contig5288:663..2148+ (Laminarionema elsbetiae ELsaHSoW15)
GGTAGCAAGCCCATAGAGTATCGCAAGGTGAGCTTCAAGGGCATGTGTGA
GTGTGTGTTGGAGGTTGGTGCGAAGGTTTCTTTTCTCTTCTTGCGTGTGT
TCGCCGTACACGGTGTTGGTATATGTGATCTCATGTAAAGTTGCCAAAAC
ATCTAGATTAATAAATTAATGGCGACTGCGGTTCCGTTGGGTTGTCGCGG
CTGGATGGCTGTGGCGGCTTGTTGTGTTGCCTGCACCGTTTGCTGTATTT
TCCGCGGCCGACGCCTAGACTGCCATGCCCCACGCTTTGTCGAACCCCTC
CCCGCCCCCTCTCTGGCTTCCTCTTCTGCCAAGTTACGGAAAGAGCGTTA
GTACGAGCTTCCGACTGCGGTTGTTCGTGCATCTACTTCATTATTTAGGG
GCGGTTTCCCGTCAATGAACTAGAACTTCGATGTAAAATAACTCCAGGAA
AGCAACAACTGAGTACGCCGCCTGCCCCCCTTGGCGTGACCGGTGACGGA
AACGTTGACAAGGCCAACGGCGCTCTTGCGAGCCGCCCGGCGCTATATGT
GTATCCACACGCTCCGGTAATGTGCTCACCCCCGTGTGTCTAATGCTTCG
CCCGATGTTGGCAGCTTCCGCAGTACTTGGTCGACCACGAGGAACTCTTC
GTGGAATACACCGAGTGGGAGCGAAAGCGCGAGAGGAAGAGGCGCCGCAC
CCTTGCCGCCGAGCAGTCTCGCGAAACGGAGCTCGAGCGCAAGCGTGAGG
TGGCGAGGAGGCAGCAGGAGGAACGCCTCCAAGGGCCGAAGAAGCGGCAG
AGGCGCGCGGTGGAGTTGCCGGGCGAGAGGCGCGTGTGGGAGTTTTTGAA
AGGGGAGAAGGGCTGGAAGTTCCGCGGCGGGTGGGACGTCATCGGTCCCG
ACAAGGGTAGCAAGGCCATGACGCAGGCTCAGGTATGGATTGTTTCAGGT
GTAGTGCCGCTGCTGTCGTGTTTCTATGCCACGCCCGGTACGGTGTGGCA
CAATACATCGCTTGGGCAGCTCGGAAGTTTGAAACACTCGGGCTACGGTG
CCACACCCGGTTGTGGCCGTGGTGTATGTATGTATTGATGGAGGCGGCGA
CGAATTTGTGAAGGGGTCGGTGATGGCATGGGGCGTTGGCAGAGAGTCCT
CATGCCTCTACAATATACACAACACGCTACACCCACGGACGCTTGCTTGC
TCCTGAGAAAAAAAAAGCTTTCCGTCCGAAATCACTCGCGTGAAGCCACC
CCGCGCGCTGGTCGCTGCTCCACACCCCGCACCCCGCCGGCATGCTCCAA
AGGCATCGCTGCTTGCCCATGCCCACCCACACGTCGTTCTTCTTCTCTCG
CCTCGTCGCCGTCGTGCACAGCTCCCTTGGTTCATGGTCGACGACCCGGA
TCTCATGAAGGAGTACTGTACCGTGATTGGGAGCTGGCCGGCGACGAGCG
TGGAGCGACTGCGGATGGCCAGGCCAGCAGCAGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5288:663..2148+

>mRNA_L-elsbetiae_contig5288.13424.1 ID=mRNA_L-elsbetiae_contig5288.13424.1|Name=mRNA_L-elsbetiae_contig5288.13424.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig5288:663..2148+ (Laminarionema elsbetiae ELsaHSoW15)
GGTAGCAAGCCCATAGAGTATCGCAAGGGTAGCAAGCCCATAGAGTATCG
CAAGCTTCCGCAGTACTTGGTCGACCACGAGGAACTCTTCGTGGAATACA
CCGAGTGGGAGCGAAAGCGCGAGAGGAAGAGGCGCCGCACCCTTGCCGCC
GAGCAGTCTCGCGAAACGGAGCTCGAGCGCAAGCGTGAGGTGGCGAGGAG
GCAGCAGGAGGAACGCCTCCAAGGGCCGAAGAAGCGGCAGAGGCGCGCGG
TGGAGTTGCCGGGCGAGAGGCGCGTGTGGGAGTTTTTGAAAGGGGAGAAG
GGCTGGAAGTTCCGCGGCGGGTGGGACGTCATCGGTCCCGACAAGGGTAG
CAAGGCCATGACGCAGGCTCAGCTTCCGCAGTACTTGGTCGACCACGAGG
AACTCTTCGTGGAATACACCGAGTGGGAGCGAAAGCGCGAGAGGAAGAGG
CGCCGCACCCTTGCCGCCGAGCAGTCTCGCGAAACGGAGCTCGAGCGCAA
GCGTGAGGTGGCGAGGAGGCAGCAGGAGGAACGCCTCCAAGGGCCGAAGA
AGCGGCAGAGGCGCGCGGTGGAGTTGCCGGGCGAGAGGCGCGTGTGGGAG
TTTTTGAAAGGGGAGAAGGGCTGGAAGTTCCGCGGCGGGTGGGACGTCAT
CGGTCCCGACAAGGGTAGCAAGGCCATGACGCAGGCTCAGCTCCCTTGGT
TCATGGTCGACGACCCGGATCTCATGAAGGAGTACTGTACCGTGATTGGG
AGCTGGCCGGCGACGAGCGTGGAGCGACTGCGGATGGCCAGGCCAGCAGC
AGCACTCCCTTGGTTCATGGTCGACGACCCGGATCTCATGAAGGAGTACT
GTACCGTGATTGGGAGCTGGCCGGCGACGAGCGTGGAGCGACTGCGGATG
GCCAGGCCAGCAGCAGCA
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