mRNA_L-elsbetiae_contig5284.13422.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5284.13422.1 vs. uniprot
Match: D7FU81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU81_ECTSI) HSP 1 Score: 244 bits (622), Expect = 2.180e-65 Identity = 114/154 (74.03%), Postives = 128/154 (83.12%), Query Frame = 1 Query: 2014 PLVKVWVCKHVRKGLAEPVNRAGECQICRNASRKTKAGITMCRHVREGEARAYGRGRTNSKCPPDYGRGHCRECTLRRYPILKAKLPRPRLWPSCAMPKCRRRHHAWGMCAPCLTAFKEKHPKSKPQQQGRRKSGKPSFRYTGADAEFTDSSDD 2475 P VK+WVCKHVRKGLAEPVN++GEC CRNAS KT+AGI MC+HVREGEARAYGRG P DYG+GHCREC ++RYP+ K K+PRPRLWPSC MP CRRRHHAWGMCAPCL FK KHPK PQ Q +RKSG+P+ +YTGADAE TDSSDD Sbjct: 54 PPVKIWVCKHVRKGLAEPVNKSGECAACRNASIKTRAGIRMCKHVREGEARAYGRG------PGDYGKGHCRECFMKRYPVKKVKVPRPRLWPSCTMPACRRRHHAWGMCAPCLAEFKAKHPKCNPQAQ-KRKSGRPAHKYTGADAELTDSSDD 200
BLAST of mRNA_L-elsbetiae_contig5284.13422.1 vs. uniprot
Match: D7FU82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU82_ECTSI) HSP 1 Score: 185 bits (469), Expect = 3.220e-50 Identity = 86/102 (84.31%), Postives = 95/102 (93.14%), Query Frame = 1 Query: 1540 VGASAAVGSGVENPELKLAGVVTFQNKSGITYQGRVVAIDPRPRPDAPRGIVRVKYDDWPYDKYDEDAKMEVVTPFGWVPTPIGRAGRRASKRPVTFTPSTE 1845 VGASA+VGSGVENP+LKLAG+VTFQNKSGITY+GRVVAIDPRP P +PRG+VRVKYDDWPYDKYDED E+VTPFGWVPTP+GRAGRRASK P TFTPST+ Sbjct: 50 VGASASVGSGVENPQLKLAGLVTFQNKSGITYKGRVVAIDPRPFPGSPRGVVRVKYDDWPYDKYDEDVSTEMVTPFGWVPTPVGRAGRRASKPPPTFTPSTD 151 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5284.13422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5284.13422.1 >prot_L-elsbetiae_contig5284.13422.1 ID=prot_L-elsbetiae_contig5284.13422.1|Name=mRNA_L-elsbetiae_contig5284.13422.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=897bp RTSGRPTRALDPPPPPPPGASNRRCGSMDADSSNGSAAAREEDMDIIEIDback to top mRNA from alignment at L-elsbetiae_contig5284:1219..12583+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5284.13422.1 ID=mRNA_L-elsbetiae_contig5284.13422.1|Name=mRNA_L-elsbetiae_contig5284.13422.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=11365bp|location=Sequence derived from alignment at L-elsbetiae_contig5284:1219..12583+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5284:1219..12583+ >mRNA_L-elsbetiae_contig5284.13422.1 ID=mRNA_L-elsbetiae_contig5284.13422.1|Name=mRNA_L-elsbetiae_contig5284.13422.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5382bp|location=Sequence derived from alignment at L-elsbetiae_contig5284:1219..12583+ (Laminarionema elsbetiae ELsaHSoW15)back to top |