mRNA_L-elsbetiae_contig5280.13420.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5280.13420.1
Unique NamemRNA_L-elsbetiae_contig5280.13420.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5280.13420.1 vs. uniprot
Match: D8LT76_ECTSI (Profilin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT76_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 1.320e-28
Identity = 51/56 (91.07%), Postives = 55/56 (98.21%), Query Frame = 2 
Query:  227 EQTKGSACFACTNTLVIVGVFDDDACKEHHPSATAGGLACNKAVEDLAEYLRSAGY 394
            ++TKGSACFACTNTLVIVGVFDD+ACKEHHPS+TAG LACNKAVEDLAEYLRSAGY
Sbjct:  100 KRTKGSACFACTNTLVIVGVFDDEACKEHHPSSTAGALACNKAVEDLAEYLRSAGY 155
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BLAST of mRNA_L-elsbetiae_contig5280.13420.1 vs. uniprot
Match: A0A835YUY9_9STRA (Profilin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUY9_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.410e-5
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 2 
Query:  233 TKGSACFACTNTLVIVGVFDDDACKEHHPSATAGGLACNKAVEDLAEYLRSAGY 394
            + G AC A TNTLVIVG++     K     A A  +ACN AVE+LA+YLR + +
Sbjct:  102 SSGGACVAATNTLVIVGIY-----KASGNDAMAAQVACNSAVENLADYLRQSSF 150
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5280.13420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LT76_ECTSI1.320e-2891.07Profilin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT7... [more]
A0A835YUY9_9STRA3.410e-548.15Profilin n=1 Tax=Tribonema minus TaxID=303371 RepI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5280contigL-elsbetiae_contig5280:3952..5528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size466
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816545.6110985-CDS-L-elsbetiae_contig5280:3953..40631622816545.6110985-CDS-L-elsbetiae_contig5280:3953..4063Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5280 3954..4063 -
1691683637.2501404-CDS-L-elsbetiae_contig5280:3953..40631691683637.2501404-CDS-L-elsbetiae_contig5280:3953..4063Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5280 3954..4063 -
1622816545.6229384-CDS-L-elsbetiae_contig5280:5176..55281622816545.6229384-CDS-L-elsbetiae_contig5280:5176..5528Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5280 5177..5528 -
1691683637.2666104-CDS-L-elsbetiae_contig5280:5176..55281691683637.2666104-CDS-L-elsbetiae_contig5280:5176..5528Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5280 5177..5528 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5280.13420.1prot_L-elsbetiae_contig5280.13420.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5280 3954..5528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5280.13420.1

>prot_L-elsbetiae_contig5280.13420.1 ID=prot_L-elsbetiae_contig5280.13420.1|Name=mRNA_L-elsbetiae_contig5280.13420.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=154bp
PTIKKNHVNTTNWSHPLVPTNSSTDRFHQIIPTRGGTVRSMRLPTDARTH
ARTHARTGWGGGTRSGTGRPANGERGADQGERVLRVHQHSGDRGRLRRRR
VQGAPPLRHRRRPRLQQGCGGPRRIPALSGILSTHRSGGLGDIFSVTIFK
AGLG
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mRNA from alignment at L-elsbetiae_contig5280:3952..5528-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5280.13420.1 ID=mRNA_L-elsbetiae_contig5280.13420.1|Name=mRNA_L-elsbetiae_contig5280.13420.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1577bp|location=Sequence derived from alignment at L-elsbetiae_contig5280:3952..5528- (Laminarionema elsbetiae ELsaHSoW15)
CCGACAATAAAAAAAAACCACGTCAACACCACTAACTGGTCACACCCACT
GGTACCAACCAATTCATCGACCGATCGCTTCCACCAAATCATACCAACCC
GCGGCGGCACGGTACGATCGATGCGCCTGCCGACGGACGCACGCACGCAC
GCACGCACGCACGCACGCACCGGATGGGGCGGGGGGACTCGATCTGGGAC
GGGACGGCCGGCGAACGGGGAACGGGGAGCAGACCAAGGGGAGCGCGTGC
TTCGCGTGCACCAACACTCTGGTGATCGTGGGCGTCTTCGACGACGACGC
GTGCAAGGAGCACCACCCCTCCGCCACCGCCGGCGGCCTCGCCTGCAACA
AGGTGTGCCCTTTGCTTGCTTGCTTTTGCCCCTGCCTGACCGGTCGACAG
GGCGAGGAAAGTGGAAAATGGGTGTTGGTTTTGTCGCTGGTGGCTTTACC
TGGACGAAGAACCCTGAGAGTATTCCAACGGTTTGTTTTCTGCCCTAAAA
AGCGCGGTGGAAACCAGCCAGGTTTTGTTGATTGTTTTCAGGGCTTTCTG
TGTGTGTGGAGACACACACCCTTTCGCCCGTGATGGCTTCGCCTGTACTG
GCATGTACACATGGTTTTCATCCCGCCATTAATTCGTGTGTCAAGCGGCG
GCCACCATTTTTTGTGCGTTGTGGCGTGTTTTTTAAGTTTGCAACAGCAG
TAGTAGTGACTGATAAAAGAAGAGCGGATGGACTTGAGCACCCCCCCCCA
CACACTCGCGCGCCCCAATCGTGTTCTGTGAAATATGAATGAAGTCTGGA
GAGCGCCGCCAAAGCCACGGTAATCCCGCAAACTGCATACATATGTGTGC
GCGGGGCGTTCTCTTTTGCCGGCGGGATCGTCGTTCCGCGGCTTTCCCCC
CGTCGCTATCTTGTCTTTCGCCTGTTTGTGGTTTCGTCAGACCCTCTCAT
GCACGTCGTTTGAGTTTTTTATATTATACTGCTCGGCCCTTTTTTTTTGG
AAGGGATGCGTGTCCTTTTTTTCCTCCTATAACATAAGAGTGGGGTTGCC
AAAAGCGCGCCTTCACCAATTTTCATAACCCTACGATACATACCCATTCC
TTCGGATCCATTTATTTCTGTTTTGTTTTTAAGTATGCCCTTTTTAGGGT
AAGTTATCCTTTGACCACGGGAATCGACTGCGTCAGTGTTGGATTAGTAC
GGACTCATGGTGGAGGTACTGGATGGAGAGATCGGAACGGTTTCTAATGT
GAAGACAACAACAACAAATCAACTCACGATCGCCAACCAAGCATGGAGTT
GCTCGTACGGCCCCCTCCCCTCGCTCAGCAGTACGGATGTTCGGCCGACA
ACAGCCTCCGTTGGTAGTCGTTCGTCACTGCTCTATTGCTGCAACTGTTG
CCAGTGCACTCAACCATACCCCCCGTCACCGCATGCATGCCGCTGCCGAT
TGTCGCTGCGTGCAGGCTGTGGAGGACCTCGCAGAATACCTGCGCTCAGC
GGGATACTAAGTACACACCGCAGCGGCGGACTTGGTGATATTTTTTCTGT
GACAATTTTCAAAGCTGGGTTGGGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5280:3952..5528-

>mRNA_L-elsbetiae_contig5280.13420.1 ID=mRNA_L-elsbetiae_contig5280.13420.1|Name=mRNA_L-elsbetiae_contig5280.13420.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=924bp|location=Sequence derived from alignment at L-elsbetiae_contig5280:3952..5528- (Laminarionema elsbetiae ELsaHSoW15)
CCGACAATAAAAAAAAACCACGTCAACACCACTAACTGGTCACACCCACT
GGTACCAACCAATTCATCGACCGATCGCTTCCACCAAATCATACCAACCC
GCGGCGGCACGGTACGATCGATGCGCCTGCCGACGGACGCACGCACGCAC
GCACGCACGCACGCACGCACCGGATGGGGCGGGGGGACTCGATCTGGGAC
GGGACGGCCGGCGAACGGGGAACGGGGAGCAGACCAAGGGGAGCGCGTGC
TTCGCGTGCACCAACACTCTGGTGATCGTGGGCGTCTTCGACGACGACGC
GTGCAAGGAGCACCACCCCTCCGCCACCGCCGGCGGCCTCGCCTGCAACA
AGCCGACAATAAAAAAAAACCACGTCAACACCACTAACTGGTCACACCCA
CTGGTACCAACCAATTCATCGACCGATCGCTTCCACCAAATCATACCAAC
CCGCGGCGGCACGGTACGATCGATGCGCCTGCCGACGGACGCACGCACGC
ACGCACGCACGCACGCACGCACCGGATGGGGCGGGGGGACTCGATCTGGG
ACGGGACGGCCGGCGAACGGGGAACGGGGAGCAGACCAAGGGGAGCGCGT
GCTTCGCGTGCACCAACACTCTGGTGATCGTGGGCGTCTTCGACGACGAC
GCGTGCAAGGAGCACCACCCCTCCGCCACCGCCGGCGGCCTCGCCTGCAA
CAAGGCTGTGGAGGACCTCGCAGAATACCTGCGCTCAGCGGGATACTAAG
TACACACCGCAGCGGCGGACTTGGTGATATTTTTTCTGTGACAATTTTCA
AAGCTGGGTTGGGCGCTGTGGAGGACCTCGCAGAATACCTGCGCTCAGCG
GGATACTAAGTACACACCGCAGCGGCGGACTTGGTGATATTTTTTCTGTG
ACAATTTTCAAAGCTGGGTTGGGC
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