mRNA_L-elsbetiae_contig5279.13413.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5279.13413.1
Unique NamemRNA_L-elsbetiae_contig5279.13413.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5279.13413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5279contigL-elsbetiae_contig5279:4653..5676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size396
Cds size396
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5279.13413.1prot_L-elsbetiae_contig5279.13413.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5279 4653..5676 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816544.970354-CDS-L-elsbetiae_contig5279:4652..46811622816544.970354-CDS-L-elsbetiae_contig5279:4652..4681Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5279 4653..4681 -
1691683636.7310224-CDS-L-elsbetiae_contig5279:4652..46811691683636.7310224-CDS-L-elsbetiae_contig5279:4652..4681Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5279 4653..4681 -
1622816544.9843788-CDS-L-elsbetiae_contig5279:4867..49391622816544.9843788-CDS-L-elsbetiae_contig5279:4867..4939Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5279 4868..4939 -
1691683636.7456615-CDS-L-elsbetiae_contig5279:4867..49391691683636.7456615-CDS-L-elsbetiae_contig5279:4867..4939Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5279 4868..4939 -
1622816544.9965026-CDS-L-elsbetiae_contig5279:5117..52261622816544.9965026-CDS-L-elsbetiae_contig5279:5117..5226Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5279 5118..5226 -
1691683636.755806-CDS-L-elsbetiae_contig5279:5117..52261691683636.755806-CDS-L-elsbetiae_contig5279:5117..5226Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5279 5118..5226 -
1622816545.0072198-CDS-L-elsbetiae_contig5279:5490..56761622816545.0072198-CDS-L-elsbetiae_contig5279:5490..5676Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5279 5491..5676 -
1691683636.7645307-CDS-L-elsbetiae_contig5279:5490..56761691683636.7645307-CDS-L-elsbetiae_contig5279:5490..5676Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5279 5491..5676 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5279.13413.1

>prot_L-elsbetiae_contig5279.13413.1 ID=prot_L-elsbetiae_contig5279.13413.1|Name=mRNA_L-elsbetiae_contig5279.13413.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=132bp
HYFPLSPPTLLYLLCSTLPSILSPQSIQLPGRRPGGILYWATTMYTCGLG
GSWENRALTSDKRDHRFPDAASALGTPVDRSEASRWQQRRRREDPPSSGG
GRGHERGSSSADGFSQSWARLSGAGGCRRLAS
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mRNA from alignment at L-elsbetiae_contig5279:4653..5676-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5279.13413.1 ID=mRNA_L-elsbetiae_contig5279.13413.1|Name=mRNA_L-elsbetiae_contig5279.13413.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1024bp|location=Sequence derived from alignment at L-elsbetiae_contig5279:4653..5676- (Laminarionema elsbetiae ELsaHSoW15)
CACTATTTTCCCCTCTCCCCTCCCACGCTCTTGTATCTCCTGTGTTCGAC
CCTGCCTTCGATCCTTTCGCCCCAATCCATACAGCTCCCTGGCCGACGAC
CAGGTGGAATTCTGTATTGGGCAACGACAATGTACACTTGTGGGCTGGGG
GGGAGTTGGGAGAACAGGGCCCTTACCAGCGACAAAGTGAGCGAGCAGAT
TGTCCTTTTTTTGAAAACATCCCCATAGCTGGCGTCATATCTGAGAGCAA
CATTTGGGGAAAACTCCGTAGCAGCAGTGCTACGGTTGGCCGGTACCGGG
GGGACCGAGACGCACGAGGGGCGGGCAGACAACGGCAAAACCTGGCATGT
GTTCAACCGAGTTCGAGTGATTCGAGTTTGTGTTATTAGTCTACAGAACT
GAGCCTTAGCACTCGAACCTCCACATTCGTTTTAACAACGCCTTCCGCAG
CGAGACCATCGCTTCCCAGATGCAGCGAGCGCACTGGGAACACCAGTTGA
CCGCTCTGAGGCATCGCGGTGGCAGCAGCGACGGCGCCGCGAAGACCCCC
CATCCAGCGGTAGGAGCCCCTTATAGCATCGATCACCGTCTTTGTTATGA
TAACGCCTCGTGCGCAAGAAGGAACATTGCTTGTCACCATGTATCGCTAT
TTTACATGAACCAAAGGCAAATGACACCTTCATAATCAGTATTATTGTAG
GTCCGTCCTTATTTGTTTGTTTTGACTTGCTATGCAGGAGGAGGACGTGG
ACACGAGCGAGGCAGCAGTAGCGCCGATGGGTTCTCACAGTCTTGGGCAC
GGCTCTCAGGTGAGACGTATTGACTGAACACTACCGTGCCGTTTTCGTCA
TGAGACCATGTGGCGTGTGCAGTGGAGTCGAGATAAAGTACAAAGACTTA
TGATATGCCGTCAACATTCGCTGCAAACTAGGTACATCAATTGCTTTCAA
ACGAAATGCTCTTCTCAACCCCCCTCTCCTGCTCCCTTGCTTTAGGTGCA
GGAGGCTGCCGACGACTTGCCTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5279:4653..5676-

>mRNA_L-elsbetiae_contig5279.13413.1 ID=mRNA_L-elsbetiae_contig5279.13413.1|Name=mRNA_L-elsbetiae_contig5279.13413.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig5279:4653..5676- (Laminarionema elsbetiae ELsaHSoW15)
CACTATTTTCCCCTCTCCCCTCCCACGCTCTTGTATCTCCTGTGTTCGAC
CCTGCCTTCGATCCTTTCGCCCCAATCCATACAGCTCCCTGGCCGACGAC
CAGGTGGAATTCTGTATTGGGCAACGACAATGTACACTTGTGGGCTGGGG
GGGAGTTGGGAGAACAGGGCCCTTACCAGCGACAAACACTATTTTCCCCT
CTCCCCTCCCACGCTCTTGTATCTCCTGTGTTCGACCCTGCCTTCGATCC
TTTCGCCCCAATCCATACAGCTCCCTGGCCGACGACCAGGTGGAATTCTG
TATTGGGCAACGACAATGTACACTTGTGGGCTGGGGGGGAGTTGGGAGAA
CAGGGCCCTTACCAGCGACAAACGAGACCATCGCTTCCCAGATGCAGCGA
GCGCACTGGGAACACCAGTTGACCGCTCTGAGGCATCGCGGTGGCAGCAG
CGACGGCGCCGCGAAGACCCCCCATCCAGCGCGAGACCATCGCTTCCCAG
ATGCAGCGAGCGCACTGGGAACACCAGTTGACCGCTCTGAGGCATCGCGG
TGGCAGCAGCGACGGCGCCGCGAAGACCCCCCATCCAGCGGAGGAGGACG
TGGACACGAGCGAGGCAGCAGTAGCGCCGATGGGTTCTCACAGTCTTGGG
CACGGCTCTCAGGAGGAGGACGTGGACACGAGCGAGGCAGCAGTAGCGCC
GATGGGTTCTCACAGTCTTGGGCACGGCTCTCAGGTGCAGGAGGCTGCCG
ACGACTTGCCTCCGTGCAGGAGGCTGCCGACGACTTGCCTCC
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