mRNA_L-elsbetiae_contig5279.13412.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5279.13412.1
Unique NamemRNA_L-elsbetiae_contig5279.13412.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5279.13412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5279contigL-elsbetiae_contig5279:3365..4501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size355
Cds size351
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5279.13412.1prot_L-elsbetiae_contig5279.13412.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5279 3367..4501 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816544.9086847-CDS-L-elsbetiae_contig5279:3366..34681622816544.9086847-CDS-L-elsbetiae_contig5279:3366..3468Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5279 3367..3468 -
1691683636.685383-CDS-L-elsbetiae_contig5279:3366..34681691683636.685383-CDS-L-elsbetiae_contig5279:3366..3468Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5279 3367..3468 -
1622816544.9212277-CDS-L-elsbetiae_contig5279:4036..42041622816544.9212277-CDS-L-elsbetiae_contig5279:4036..4204Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5279 4037..4204 -
1691683636.6966472-CDS-L-elsbetiae_contig5279:4036..42041691683636.6966472-CDS-L-elsbetiae_contig5279:4036..4204Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5279 4037..4204 -
1622816544.9343085-CDS-L-elsbetiae_contig5279:4420..45011622816544.9343085-CDS-L-elsbetiae_contig5279:4420..4501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5279 4421..4501 -
1691683636.715345-CDS-L-elsbetiae_contig5279:4420..45011691683636.715345-CDS-L-elsbetiae_contig5279:4420..4501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5279 4421..4501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5279.13412.1

>prot_L-elsbetiae_contig5279.13412.1 ID=prot_L-elsbetiae_contig5279.13412.1|Name=mRNA_L-elsbetiae_contig5279.13412.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
AGGATPGIGNLLRKVKGIKYPLFSGAEEVSEVLALVKMVSGMPGYIARVR
QARLAKVLSKRNRRDLDASALETAAASLESGREETRAVLDALLSRVDNLP
QRKAFLAAITRWERTLK
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mRNA from alignment at L-elsbetiae_contig5279:3365..4501-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5279.13412.1 ID=mRNA_L-elsbetiae_contig5279.13412.1|Name=mRNA_L-elsbetiae_contig5279.13412.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1137bp|location=Sequence derived from alignment at L-elsbetiae_contig5279:3365..4501- (Laminarionema elsbetiae ELsaHSoW15)
GCTGGGGGCGCCACCCCGGGTATTGGCAACCTTCTTAGGAAGGTAAAGGG
GATCAAATATCCCCTTTTCAGCGGTGCCGAGGTGCGTGCAGGTATCGGCA
TTTGCGAATTGATGGAACGGGGATGGGAAAGGAAGGATTGTGCATATATT
ACATCATATTCATCCGTCTCGTCGTGCTACTGCAGCCTTGAACCGGTGCT
ACTGCTGCGATACCGCGAGGACCCCGAGCGAGTCGATGGCACTGATTTTC
TAACTCACTCTCTCGCCCGTTGACTTCTCTATCCAACGAAACACCAGGAA
GTGTCCGAGGTATTGGCGCTTGTCAAAATGGTCAGCGGCATGCCTGGCTA
CATCGCCCGTGTCCGACAGGCACGCCTGGCCAAGGTCCTCAGCAAGAGGA
ACAGGAGGGATCTAGATGCGTCTGCTCTAGAGACCGCGGCCGCCAGCCTC
GAAAGTGGCCGCGAGGTGTGTGCTTGATGTGCGCGCGGATGGTGCTGAGT
GGTCGAGTTCCTTAACAGTGTGGCATCGCCGGCAGGGTAGTCGCGGGTTC
AAACCTCGACCTGTGCATTTCCTTTGCTTCGCAAGAAAAAACAAAAAATT
GTGCGTGAAAGGGATTTCCACTCTCTCTCACGATTATCTAAACCCCGCTT
CGAAAAAGCCTCCGTTGATCACTTAAAGAGTAGATTTCAGTGATGGAGAA
CGTTATAAGATGTACCATCTGGTGCTTGTTGAACCTTTTACTAGACTGAT
GGTACATCTTATAACATCAGTGCAAGCGCCGTTCATGCACTGGCGGTTTG
ATGATAACGAGGGTACAGCGGGCACGGCGCGGGTTGTGTATTGCTGTTGG
TACCGCGGTAGCCAAGGTTGAGCTTCAGACTCCCCTCGCGCCATGTTACT
GTTTCCGTTGTTTGGGTTTTTGATAGTGCTTGTCCTCAGGCAAAGCAGTG
CAGGCTGCAGCCGCGTGCCATGGATTCAATCGATTCTTTTAATATCGTCG
AACCAAAACCACTCCATTTCCCAACGAAACAAGGAGACCCGGGCCGTGCT
CGATGCACTGCTCAGCCGGGTGGACAACCTGCCTCAGAGGAAGGCATTCC
TGGCGGCGATCACGCGGTGGGAACGGACGTTAAAGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5279:3365..4501-

>mRNA_L-elsbetiae_contig5279.13412.1 ID=mRNA_L-elsbetiae_contig5279.13412.1|Name=mRNA_L-elsbetiae_contig5279.13412.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig5279:3365..4501- (Laminarionema elsbetiae ELsaHSoW15)
GCTGGGGGCGCCACCCCGGGTATTGGCAACCTTCTTAGGAAGGTAAAGGG
GATCAAATATCCCCTTTTCAGCGGTGCCGAGGCTGGGGGCGCCACCCCGG
GTATTGGCAACCTTCTTAGGAAGGTAAAGGGGATCAAATATCCCCTTTTC
AGCGGTGCCGAGGAAGTGTCCGAGGTATTGGCGCTTGTCAAAATGGTCAG
CGGCATGCCTGGCTACATCGCCCGTGTCCGACAGGCACGCCTGGCCAAGG
TCCTCAGCAAGAGGAACAGGAGGGATCTAGATGCGTCTGCTCTAGAGACC
GCGGCCGCCAGCCTCGAAAGTGGCCGCGAGGAAGTGTCCGAGGTATTGGC
GCTTGTCAAAATGGTCAGCGGCATGCCTGGCTACATCGCCCGTGTCCGAC
AGGCACGCCTGGCCAAGGTCCTCAGCAAGAGGAACAGGAGGGATCTAGAT
GCGTCTGCTCTAGAGACCGCGGCCGCCAGCCTCGAAAGTGGCCGCGAGGA
GACCCGGGCCGTGCTCGATGCACTGCTCAGCCGGGTGGACAACCTGCCTC
AGAGGAAGGCATTCCTGGCGGCGATCACGCGGTGGGAACGGACGTTAAAG
GAGACCCGGGCCGTGCTCGATGCACTGCTCAGCCGGGTGGACAACCTGCC
TCAGAGGAAGGCATTCCTGGCGGCGATCACGCGGTGGGAACGGACGTTAA
AG
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