mRNA_L-elsbetiae_contig5276.13409.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5276.13409.1
Unique NamemRNA_L-elsbetiae_contig5276.13409.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5276.13409.1 vs. uniprot
Match: D8LFS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFS6_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 5.120e-56
Identity = 99/112 (88.39%), Postives = 107/112 (95.54%), Query Frame = 1 
Query:    1 MAQGNFKKSGGAPKMKGKAGRGNVAAKSRRLVNKGKTAVKKGSWNMPPKQGSRLAAAKEDMASHATTKMINSTNEQQAAAKCFQNQEKLFLRDVKESGRELARDIKRKALKR 336
            MAQG+FKKSGGAPK+KGKAG+GNVAAKSRRLVNKGKTAVKKGSWNMPPKQ ++LAAAKE+M   A TKMINSTNE+QAAAKCFQNQEKLFLR+VKESGRELARDIKRKALKR
Sbjct:    1 MAQGSFKKSGGAPKVKGKAGKGNVAAKSRRLVNKGKTAVKKGSWNMPPKQAAKLAAAKEEM---ARTKMINSTNEKQAAAKCFQNQEKLFLREVKESGRELARDIKRKALKR 109
[Close]
BLAST of mRNA_L-elsbetiae_contig5276.13409.1 vs. uniprot
Match: A0A7R9UB02_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UB02_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.150e-11
Identity = 53/128 (41.41%), Postives = 74/128 (57.81%), Query Frame = 1 
Query:    1 MAQGNFKKSGGAPKMKGKAGRGNVAAKSRRLVNKGKTAVKKGSWNMPPKQGSRLAAAKEDMASHATTKMINSTNEQQAAAKCFQNQEKLFLRDVKESGRELARDIKRKALKRKKTRIEEKLEQAKEKV 384
            MAQ    K G AP+ K             + V K +   KKG  +   K+G R     +D+ S A ++ IN+  E+  AAK  QN E+L   D+K  G+ELA++I+R+AL RKK+RIEEKLEQAK+K+
Sbjct:   10 MAQSGLFKKGKAPQKK-------------KRVTKMQKRTKKGGSDKVAKRGLRRL---QDLESRAQSRAINANLERVLAAKAVQNGERLLRPDMKSKGKELAKEIRRQALTRKKSRIEEKLEQAKQKL 121
[Close]
BLAST of mRNA_L-elsbetiae_contig5276.13409.1 vs. uniprot
Match: A0A7S1TQR0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQR0_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 8.110e-11
Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = 1 
Query:   61 RGNVAAKSRRLVNKGKTAVKKGSWNMPPKQGSRLAAAKEDMASHATTKMINSTNEQQAAAKCFQNQEKLFLRDVKESGRELARDIKRKALKRKKTRIEEKLEQAKEKV 384
            +G    K +  V K +   KKG+     K+G     A E       +K IN+TNE+  AAK  QN E++   DVK +GR LA++I+R+AL +KKTRIEEK+E+AKE++
Sbjct:   13 KGKAPPKKKLRVTKTRRNPKKGTAEKMAKRGRERVLALEKA---KQSKAINATNERTLAAKAIQNGERIVRTDVKNAGRALAKEIRRQALTKKKTRIEEKIEKAKERL 117
[Close]
BLAST of mRNA_L-elsbetiae_contig5276.13409.1 vs. uniprot
Match: A0A7S2WKX0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKX0_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 5.590e-8
Identity = 51/128 (39.84%), Postives = 66/128 (51.56%), Query Frame = 1 
Query:    1 MAQGNFKKSGGAPKMKGKAGRGNVAAKSRRLVNKGKTAVKKGSWNMPPKQGSRLAAAKEDMASHATTKMINSTNEQQAAAKCFQNQEKLFLRDVKESGRELARDIKRKALKRKKTRIEEKLEQAKEKV 384
            MAQG  K            GRG   + S R   K     K  +    PK  +RL   K+       T+ IN+  EQ  AAK  Q  E+L  RD+   G+E+ARDIKR+ALKRKK R+EEKLE+ + K+
Sbjct:    1 MAQGQLK------------GRGKAKSVSLRKQAKAAQPKKHRAGVAKPKNQARLERFKQRQ---TVTRQINANIEQLTAAKVCQAGERLKTRDIAAKGKEMARDIKREALKRKKPRVEEKLEKLRAKL 113
[Close]
BLAST of mRNA_L-elsbetiae_contig5276.13409.1 vs. uniprot
Match: A0A836CMQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMQ4_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 4.250e-7
Identity = 53/139 (38.13%), Postives = 75/139 (53.96%), Query Frame = 1 
Query:    1 MAQGNFKKSGGAPKMKGKAGRGNVAAKSRRLVNKGKTAVKKGSW-----------NMPPKQGSRLAAAKEDMASHATTKMINSTNEQQAAAKCFQNQEKLFLRDVKESGRELARDIKRKALKRKKTRIEEKLEQAKEKV 384
            MAQG FK +G    +KGKAG+  +  K  + V   K +   G             N+ P++   L A K++      TK I+     Q AAK   NQEK+ L D++ SG+ L ++++R AL RKK+RIEEKL  AKEK+
Sbjct:    1 MAQGTFKSTG----LKGKAGKPQIK-KGGKHVAATKASAGLGRXXXXXXXXXXXXNVAPRKPDALQAYKKEK---EVTKQIHKQLITQTAAKAISNQEKMELGDIRGSGKALVKEMRRDALTRKKSRIEEKLLAAKEKL 131
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5276.13409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LFS6_ECTSI5.120e-5688.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9UB02_9STRA2.150e-1141.41Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1TQR0_9STRA8.110e-1142.59Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2WKX0_9STRA5.590e-839.84Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836CMQ4_9STRA4.250e-738.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5276contigL-elsbetiae_contig5276:680..4696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_001100.1
Exons4
Model size384
Cds size384
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5276.13409.1prot_L-elsbetiae_contig5276.13409.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5276 680..4696 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816544.6530263-CDS-L-elsbetiae_contig5276:679..7781622816544.6530263-CDS-L-elsbetiae_contig5276:679..778Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5276 680..778 -
1691683636.5046263-CDS-L-elsbetiae_contig5276:679..7781691683636.5046263-CDS-L-elsbetiae_contig5276:679..778Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5276 680..778 -
1622816544.6648586-CDS-L-elsbetiae_contig5276:3057..31501622816544.6648586-CDS-L-elsbetiae_contig5276:3057..3150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5276 3058..3150 -
1691683636.5142403-CDS-L-elsbetiae_contig5276:3057..31501691683636.5142403-CDS-L-elsbetiae_contig5276:3057..3150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5276 3058..3150 -
1622816544.6773512-CDS-L-elsbetiae_contig5276:3885..39501622816544.6773512-CDS-L-elsbetiae_contig5276:3885..3950Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5276 3886..3950 -
1691683636.523929-CDS-L-elsbetiae_contig5276:3885..39501691683636.523929-CDS-L-elsbetiae_contig5276:3885..3950Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5276 3886..3950 -
1622816544.6896622-CDS-L-elsbetiae_contig5276:4569..46961622816544.6896622-CDS-L-elsbetiae_contig5276:4569..4696Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5276 4570..4696 -
1691683636.5327563-CDS-L-elsbetiae_contig5276:4569..46961691683636.5327563-CDS-L-elsbetiae_contig5276:4569..4696Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5276 4570..4696 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5276.13409.1

>prot_L-elsbetiae_contig5276.13409.1 ID=prot_L-elsbetiae_contig5276.13409.1|Name=mRNA_L-elsbetiae_contig5276.13409.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
MAQGNFKKSGGAPKMKGKAGRGNVAAKSRRLVNKGKTAVKKGSWNMPPKQ
GSRLAAAKEDMASHATTKMINSTNEQQAAAKCFQNQEKLFLRDVKESGRE
LARDIKRKALKRKKTRIEEKLEQAKEKV
back to top

mRNA from alignment at L-elsbetiae_contig5276:680..4696-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5276.13409.1 ID=mRNA_L-elsbetiae_contig5276.13409.1|Name=mRNA_L-elsbetiae_contig5276.13409.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4017bp|location=Sequence derived from alignment at L-elsbetiae_contig5276:680..4696- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCCAAGGAAACTTCAAGAAGAGTGGGGGCGCGCCCAAAATGAAAGG
CAAGGCCGGCAGGGGGAACGTGGCTGCGAAATCGCGGAGATTGGTCAACA
AGGGCAAGACGGCAGTGAAGAAGGGATGTGAGTGGTGTTGAGCAGCTTTG
TACTGGGTAAGTGTCGTGGTTGTATTTGTGCGTGTTGAGAGAATGGTGGA
TCGAGTGATGTTTCCTCCTGATATCACATATGTATCACAAGCAGTCAATC
TCACAGGCACCTGTGTTGCCACACGCATCCTGTTCAGCGCCGTGTATTCC
TCGATAAACGCACCCAAAACGCACCCAACAGAGTAAGTAGGGCGTGTGTG
GTGATCGGATACACATCAATAACAATCCTTTATTTTGTGTTGGTGTTGTC
GTGAAACCATGGCTGCTGCTGGTGTAAAGTCTGCTTTTCTAATGGCAGAG
CAGCACCACACGCTGTAAACTGCGAACAGAGCTGGCTGTAGGTAAGGTAA
GTCATGCAGTAGTCGCCCGGATTATTTTGAAGACAACAGTACATACATAC
ATACGGCTCCACGCTTTGGGCCAAACTAAGGTATAGCTTAGTCTAGTGTA
TTGGCCGGCGAATACGTGTTCTCGCTTTTGTTAGCACCCTCCTGTTGTGC
TGCTCGCCTACTAGCTTGTTACTCGCACACATTCCCCTCCACGTGACACC
CTCTGTTGCATGTCTCTCTCTGCCTTGCCTCGGGACGCCTCCACAGCATG
GAATATGCCGCCAAAACAAGGGAGTAGACTCGCGGCCGCCAAGGAAGACA
TGGCAAGTCATGTACCAGCATAGACAAGTGTTGTGACCACTGCTGTTGAG
CTAAGGGCAATTCCAAAGTTGCTGTAAAACTCGCTAGAGTGCCTCAATCA
AACACGCCAATGGAACACAGACGTATGTACATAATTAGACACCCATTTCA
CCCTCGTGTTTCTTCGGATGAGTACAGGATAACAGCTTTGAATTCGTCTG
GTTTGCTGTAAAACTCGCTAGTGCCTCAATCAAACACGCCAATGGAACAC
AGACGTATGTACATAGACACCCGTTTCACCCTAACGTTTCTTCGGATGAG
TACAGGATAACAGCTTTGAATTCGCCTGGTTGTATGAGTAGCCATTGCTG
TTGGGTACTCAGTCCCACCCAACCAGTGTTCCGAAGCTGCACCGGCGACC
CCACCACCGTGCGTGCCGGGAATGTATGTCGGAACACCCCGACTACTACG
GTATACATGAGCTACTGTATATTGATACAACTAGGAACGGGAACACACAC
ACTGAAGAGGCGATGGAAGACTAGAGAGCGACCCCTGCAGAGGTTGCTCC
CACGCACGGAAACCCAGCAGCACCACCCATACAGATTAATTACGCTTGAT
GGCCGCTGAGTGACCGAGTGGACTTTTATTTTTCCAAACCTCTGATGGGA
TCGTGATAAGTTCAACGTGGTGTGCCGCTCGTGGGCGTACTTTGTCGCCT
CGCCCAACCGTCGTGCCCCACGCTTGAATGAACTGTGTGTGCATAGGCAA
CAACAAAAATGATCAACAGCACCAACGAGCAACAGGCCGCAGCAAAGTGC
TTCCAAAACCAGGAGAAGCTTTTTCTCAGGGACGTGAAGGTTAGTGGGCG
ACTGATTGGACTGGACAGGCGATGCTACAGCTTCGGCTTGAAAAACGGCC
GTGTTGTGTAATGGATGTTCCTGATACACAGCAAGTGTATGCGTAAATAT
ATAAGTGGGTCCGTAGATGACGAAGGCATGTCTTGTACCCCTGTCTCCCT
TTGGCGAATTTTGTTTGTGCAGAGATTGAGGAGAGCATTCGACTACTGTG
CTTAAGCAGTTGCAGCTACGATGTGCTTTCTGCGGCTTTTGTGTAGGATG
TACATATGGCACAAAAGTGTATTTCGACTTTCGTTTCTTTATATACATAT
GTATGTACGCAAAGTTGGTAGACTAGCTAGAGTAGGTTTTGACAGAAAGA
CAAGGGATATTTGTAATTTCGGTTTGTTCGCCTCTACTTACCTAAATGGT
CCTCAGTCTGAGGAGGCTTTTCCTTTCCATCGCCGGTGGTAGTCCGCGGA
AGCTCGGAGGACGTGAATTTAACCGCCACTAGACCTTTCGGTCGTCTTTT
AGGGTGAAAGTGTTGAAGCGTTCGCCTCTTCTGGCACATTCTTGAGTTCT
GCCGTCGACACAGCAGATATGTGGATACCGTCATTTCCCTTGAGAATGCC
CCCGGGTGTAAACACTTTTCAAAGCCAATTATCTCCGCAATGGGTGCGCG
CGAAGGATCTCGTCGATATATTTCCGAAATTTAACATTTTTGAAAATAAA
CCAGGAAATCAAAGAAAGAATCTCCCCACAAGAGACGCGACTCCATGGTT
AGTTAACGGTTCAATACATACGAAGTACATAGTAGTGGTGTAGTTTGGTC
CGGCCGACCGAGTAGAATAGAAAAACACAAAAAACATACTAAAATAGTTC
AAAACCTCCCCATAACTCTGCCAGGTCAACCAGCACATATTCCGGGGAGA
AGCCCACCGTAATGCCGTGGTCTTGTGATCTTCTTCTAAGATAGGAATAC
GTCGCAGTGTGACTAAAAGTCGAATTGCTGTTTTGATTGTTGTTGTGGTT
GCCGCTGTGAAGAAGTGTAACTACCAGTTGACATATACAAGGCATGTATG
TATGTAGAAGGATAGAAATTCGGATGATGTGAGAGGGTTGTGGTATCTTA
CGACATGTGTGTCGTATGTAGGACATTTTTTTTCGAAAGGAGAGAAGGAA
ATCAAAGACCTTCCCCACAAGAGACGGGTTTTTGTGAGTGGAGAACGCCC
ACCAGGACACCGACCTCATCCTACTTATGATTTGCGGAAACTGTGTGTAG
AATGTGAGGATTAGAGAAGAAAATATGTAGGTAGCTCCGCGAGAACGCTT
GCTAGGAGTTATGTTATCAAACGTATAGGATGCAAATAACCAGCAGATAC
AAGCAGATTCAGATTCAACAGGTTGGTAAGGGAGGGTGGATACACGAGCA
GTAGTTCGTCGCAAGTAGGGTATGTATGGAAGACATGTGTAAGATATGAT
ATGTAAGCCTATAGTCTAATGTATGTGTGGTTTAATGTAAGAAGATCAGG
CGTCAGGGTGCACGTGTGTGTCTTGGTTACCATGGAGATATGTGACCCAG
ACGATATGTGACCCAGACGGTAAATTGAACTTCCCCATCATGTCTTGTGT
GGTGTTGTGCAGCAGTCCTCCCTCGCGTTACGTGATCTTGTCCCTCATAG
CATGCTCAGCAGAAGTCGTTGGTGGTACGTGAACAAGCAGTAGTTGTCCT
CTCTAGCATCAAGATCGGTTGTGACGCAACACACACACGCCTGCGTCACA
AGAGAAGAGCGGACGTCAGCTAGGTGGCCAAGGAGAAAAAGCGAGGCGCA
AGCCTACGCTGATCGGTCCACCCCCCAAAGCCAAAGAGAACTCGCTGTAA
GGTGTATCCCAATGGCAGGAAACAAGGCCAGATACTCAATACCGAAGGGA
GGTGTCAATCCTACGCTCTCGGTTGTGGAGAAAATCGGCATGAAAATAGT
GTACACCGGGCGTTCTCAAGGGGTATTCCGATAGCTCCTTCAGCACAGCA
CATTGCGAACGAACCACGCTCTCTCATTCAAGCAGGGACATGGCGGCCGG
AATGCTCGCTTTAGACAGTATGTATGTAGGCAAAGAAAAGCTTGAGGAAA
CTAAGGAGGCCGTCTGAAAAGGTAAAATTACACGCCCACGAATGTGTTTT
GGGCGTTTGGTGTTAAAAATGTGACGCGTTCAAGATTACCCCTGTGGGAG
GTCATGCCTCTGTGATGCACTACCGACACCAAACGCTGCCCGGCGGTCCG
TGTCTGTTGATATGACAGGAAAGCGGCCGGGAGTTGGCGCGCGACATCAA
GCGAAAGGCGCTCAAGCGAAAAAAGACGCGAATCGAAGAGAAGCTGGAGC
AGGCCAAAGAGAAGGTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5276:680..4696-

>mRNA_L-elsbetiae_contig5276.13409.1 ID=mRNA_L-elsbetiae_contig5276.13409.1|Name=mRNA_L-elsbetiae_contig5276.13409.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig5276:680..4696- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCCAAGGAAACTTCAAGAAGAGTGGGGGCGCGCCCAAAATGAAAGG
CAAGGCCGGCAGGGGGAACGTGGCTGCGAAATCGCGGAGATTGGTCAACA
AGGGCAAGACGGCAGTGAAGAAGGGATATGGCCCAAGGAAACTTCAAGAA
GAGTGGGGGCGCGCCCAAAATGAAAGGCAAGGCCGGCAGGGGGAACGTGG
CTGCGAAATCGCGGAGATTGGTCAACAAGGGCAAGACGGCAGTGAAGAAG
GGATCATGGAATATGCCGCCAAAACAAGGGAGTAGACTCGCGGCCGCCAA
GGAAGACATGGCAAGTCATCATGGAATATGCCGCCAAAACAAGGGAGTAG
ACTCGCGGCCGCCAAGGAAGACATGGCAAGTCATGCAACAACAAAAATGA
TCAACAGCACCAACGAGCAACAGGCCGCAGCAAAGTGCTTCCAAAACCAG
GAGAAGCTTTTTCTCAGGGACGTGAAGGCAACAACAAAAATGATCAACAG
CACCAACGAGCAACAGGCCGCAGCAAAGTGCTTCCAAAACCAGGAGAAGC
TTTTTCTCAGGGACGTGAAGGAAAGCGGCCGGGAGTTGGCGCGCGACATC
AAGCGAAAGGCGCTCAAGCGAAAAAAGACGCGAATCGAAGAGAAGCTGGA
GCAGGCCAAAGAGAAGGTGGAAAGCGGCCGGGAGTTGGCGCGCGACATCA
AGCGAAAGGCGCTCAAGCGAAAAAAGACGCGAATCGAAGAGAAGCTGGAG
CAGGCCAAAGAGAAGGTG
back to top