mRNA_L-elsbetiae_contig5271.13404.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5271.13404.1
Unique NamemRNA_L-elsbetiae_contig5271.13404.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5271.13404.1 vs. uniprot
Match: D7G7T4_ECTSI (Protein binding protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7T4_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.960e-18
Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = -1 
Query:  160 HGQQPPAFGGMPXXXXXXXAAPAMHAWTEHKAPDGRPYYYNSITRVSSYDKPVELETPQERSA 348
            +G+ P A G  PXXXXXXX AP  H WTEHKAPDGRPYYYNSITRVSSYDKPVEL+TPQE++A
Sbjct:  251 YGRPPMAPGMAPXXXXXXXVAPVAHGWTEHKAPDGRPYYYNSITRVSSYDKPVELKTPQEKAA 313
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BLAST of mRNA_L-elsbetiae_contig5271.13404.1 vs. uniprot
Match: A0A2V0NL96_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NL96_9CHLO)

HSP 1 Score: 68.6 bits (166), Expect = 5.000e-11
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = -1 
Query:  163 APAMHAWTEHKAPDGRPYYYNSITRVSSYDKPVELETPQERS 288
            AP+   WTEHKAPDGRPYYYNSIT+VS++ KP  L TP+ER+
Sbjct:  109 APSSEGWTEHKAPDGRPYYYNSITKVSAWTKPEPLMTPEERA 150
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BLAST of mRNA_L-elsbetiae_contig5271.13404.1 vs. uniprot
Match: A0A397TWH2_9GLOM (Uncharacterized protein (Fragment) n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397TWH2_9GLOM)

HSP 1 Score: 62.4 bits (150), Expect = 1.240e-10
Identity = 25/36 (69.44%), Postives = 32/36 (88.89%), Query Frame = -1 
Query:  163 WTEHKAPDGRPYYYNSITRVSSYDKPVELETPQERS 270
            WTEH APDGR YYYN++T+ SS+DKP EL+TP+ER+
Sbjct:    2 WTEHTAPDGRTYYYNTVTKQSSWDKPEELKTPEERA 37
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BLAST of mRNA_L-elsbetiae_contig5271.13404.1 vs. uniprot
Match: A0A0L0BZF9_LUCCU (Uncharacterized protein n=3 Tax=Lucilia TaxID=7374 RepID=A0A0L0BZF9_LUCCU)

HSP 1 Score: 67.0 bits (162), Expect = 1.740e-10
Identity = 33/59 (55.93%), Postives = 39/59 (66.10%), Query Frame = -1 
Query:  166 PPAFGGMPXXXXXXX--AAPAMHAWTEHKAPDGRPYYYNSITRVSSYDKPVELETPQER 336
            PP FGG P         +AP    WTEHKAPDGRPY+YN+IT+ SS++KP  L TP ER
Sbjct:   33 PPGFGGPPPAELAAAFGSAPPNTEWTEHKAPDGRPYFYNNITKQSSWEKPEALMTPIER 91
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BLAST of mRNA_L-elsbetiae_contig5271.13404.1 vs. uniprot
Match: A0A1I8NAE5_MUSDO (Uncharacterized protein n=3 Tax=Muscinae TaxID=43910 RepID=A0A1I8NAE5_MUSDO)

HSP 1 Score: 66.6 bits (161), Expect = 2.370e-10
Identity = 33/59 (55.93%), Postives = 38/59 (64.41%), Query Frame = -1 
Query:  166 PPAFGGMPXXXXXXX--AAPAMHAWTEHKAPDGRPYYYNSITRVSSYDKPVELETPQER 336
            PP FG  P         +AP    WTEHKAPDGRPYYYN+IT+ SS++KP  L TP ER
Sbjct:   29 PPGFGAPPPAELAAAFGSAPPNTEWTEHKAPDGRPYYYNNITKQSSWEKPEVLMTPAER 87
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BLAST of mRNA_L-elsbetiae_contig5271.13404.1 vs. uniprot
Match: A0A8H3XH80_GIGMA (Formin binding protein 3 n=2 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H3XH80_GIGMA)

HSP 1 Score: 64.3 bits (155), Expect = 1.520e-9
Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = -1 
Query:  163 AAPAMHAWTEHKAPDGRPYYYNSITRVSSYDKPVELETPQERS 291
            A+  +  WTEH APDGR YYYN++T+ SS+DKP EL+TP+ER+
Sbjct:   53 ASTTVRVWTEHTAPDGRTYYYNTVTKQSSWDKPEELKTPEERA 95
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BLAST of mRNA_L-elsbetiae_contig5271.13404.1 vs. uniprot
Match: A0A7S3ARR6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ARR6_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 1.890e-9
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = -1 
Query:  145 APAMHAWTEHKAPDGRPYYYNSITRVSSYDKPVELETPQERSATPATG 288
            APA H WTEHKAPDGR Y+Y+    VS+++KP E++T QE++   A G
Sbjct:   30 APASHGWTEHKAPDGRTYFYHKARGVSAWEKPDEMKTEQEKALNAAAG 77
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BLAST of mRNA_L-elsbetiae_contig5271.13404.1 vs. uniprot
Match: UPI0018CE37C4 (pre-mRNA-processing factor 40 homolog A n=1 Tax=Teleopsis dalmanni TaxID=139649 RepID=UPI0018CE37C4)

HSP 1 Score: 63.9 bits (154), Expect = 2.080e-9
Identity = 30/57 (52.63%), Postives = 35/57 (61.40%), Query Frame = -1 
Query:  166 PPAFGGMPXXXXXXXAAPAMHAWTEHKAPDGRPYYYNSITRVSSYDKPVELETPQER 336
            PP FG  P        A     WTEHKAPDGRPYYYN+ T+ SS++KP  L +P ER
Sbjct:   28 PPGFGAPPAEIVAFGGALPTTEWTEHKAPDGRPYYYNNTTKQSSWEKPEILMSPAER 84
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BLAST of mRNA_L-elsbetiae_contig5271.13404.1 vs. uniprot
Match: A0A1B0G9K7_GLOMM (Uncharacterized protein n=5 Tax=Glossina TaxID=7393 RepID=A0A1B0G9K7_GLOMM)

HSP 1 Score: 63.2 bits (152), Expect = 3.880e-9
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = -1 
Query:  166 AAPAMHAWTEHKAPDGRPYYYNSITRVSSYDKPVELETPQER 291
            AAP    WTEHKAPDGRPYYYN++T+ SS++KP  L +P ER
Sbjct:   48 AAPPNTEWTEHKAPDGRPYYYNNVTKQSSWEKPEALMSPAER 89
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BLAST of mRNA_L-elsbetiae_contig5271.13404.1 vs. uniprot
Match: A0A3S1C2A0_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1C2A0_ELYCH)

HSP 1 Score: 63.2 bits (152), Expect = 3.880e-9
Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = -1 
Query:  166 AWTEHKAPDGRPYYYNSITRVSSYDKPVELETPQER 273
            AW EHKAPDGR YYYNS+T+ SS++KP EL+TPQE+
Sbjct:  114 AWGEHKAPDGRVYYYNSVTKESSWEKPAELKTPQEK 149
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5271.13404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7T4_ECTSI1.960e-1877.78Protein binding protein, putative n=2 Tax=Ectocarp... [more]
A0A2V0NL96_9CHLO5.000e-1169.05Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A397TWH2_9GLOM1.240e-1069.44Uncharacterized protein (Fragment) n=1 Tax=Gigaspo... [more]
A0A0L0BZF9_LUCCU1.740e-1055.93Uncharacterized protein n=3 Tax=Lucilia TaxID=7374... [more]
A0A1I8NAE5_MUSDO2.370e-1055.93Uncharacterized protein n=3 Tax=Muscinae TaxID=439... [more]
A0A8H3XH80_GIGMA1.520e-960.47Formin binding protein 3 n=2 Tax=Gigaspora margari... [more]
A0A7S3ARR6_9EUKA1.890e-954.17Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
UPI0018CE37C42.080e-952.63pre-mRNA-processing factor 40 homolog A n=1 Tax=Te... [more]
A0A1B0G9K7_GLOMM3.880e-964.29Uncharacterized protein n=5 Tax=Glossina TaxID=739... [more]
A0A3S1C2A0_ELYCH3.880e-972.22Uncharacterized protein n=1 Tax=Elysia chlorotica ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5271contigL-elsbetiae_contig5271:8538..8901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size365
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816544.0424068-CDS-L-elsbetiae_contig5271:8537..89001622816544.0424068-CDS-L-elsbetiae_contig5271:8537..8900Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5271 8538..8900 +
1691683636.0944395-CDS-L-elsbetiae_contig5271:8537..89001691683636.0944395-CDS-L-elsbetiae_contig5271:8537..8900Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5271 8538..8900 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5271.13404.1prot_L-elsbetiae_contig5271.13404.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5271 8538..8900 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5271.13404.1

>prot_L-elsbetiae_contig5271.13404.1 ID=prot_L-elsbetiae_contig5271.13404.1|Name=mRNA_L-elsbetiae_contig5271.13404.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
VVEVFPPSGFVVNLPLALGSHYRSHRSHWIHRLGSRRPNHRRRSGGGRAC
GGGGRSLLGRLELDGLVVRADARDAVVVIRPAVGSFVLRPRVHRGGGRRR
HHHRGHPSKSGRLLPVAVHAV
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mRNA from alignment at L-elsbetiae_contig5271:8538..8901+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5271.13404.1 ID=mRNA_L-elsbetiae_contig5271.13404.1|Name=mRNA_L-elsbetiae_contig5271.13404.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=364bp|location=Sequence derived from alignment at L-elsbetiae_contig5271:8538..8901+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGTTGAAGTATTTCCGCCCTCCGGGTTCGTCGTAAACCTTCCACTCGC
ACTTGGGAGTCACTACCGGAGTCACCGGAGCCACTGGATCCACCGGCTTG
GCAGCCGCCGGCCGAACCATCGCCGCAGGAGCGGGGGGGGGCGGGCCTGT
GGCGGGGGTGGCCGATCTCTCCTGGGGCGTCTCGAGCTCGACGGGCTTGT
CGTACGAGCTGACGCGCGTGATGCTGTTGTAGTAATACGGCCTGCCGTCG
GGAGCTTTGTGCTCCGTCCACGCGTGCATCGCGGGGGCGGCCGGCGGAGG
CATCATCATCGGGGGCATCCCTCCAAAAGCGGGCGGCTGCTGCCCGTGGC
GGTACATGCGGTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5271:8538..8901+

>mRNA_L-elsbetiae_contig5271.13404.1 ID=mRNA_L-elsbetiae_contig5271.13404.1|Name=mRNA_L-elsbetiae_contig5271.13404.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig5271:8538..8901+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGTTGAAGTATTTCCGCCCTCCGGGTTCGTCGTAAACCTTCCACTCGC
ACTTGGGAGTCACTACCGGAGTCACCGGAGCCACTGGATCCACCGGCTTG
GCAGCCGCCGGCCGAACCATCGCCGCAGGAGCGGGGGGGGGCGGGCCTGT
GGCGGGGGTGGCCGATCTCTCCTGGGGCGTCTCGAGCTCGACGGGCTTGT
CGTACGAGCTGACGCGCGTGATGCTGTTGTAGTAATACGGCCTGCCGTCG
GGAGCTTTGTGCTCCGTCCACGCGTGCATCGCGGGGGCGGCCGGCGGAGG
CATCATCATCGGGGGCATCCCTCCAAAAGCGGGCGGCTGCTGCCCGTGGC
GGTACATGCGGTGGTCGTTGAAGTATTTCCGCCCTCCGGGTTCGTCGTAA
ACCTTCCACTCGCACTTGGGAGTCACTACCGGAGTCACCGGAGCCACTGG
ATCCACCGGCTTGGCAGCCGCCGGCCGAACCATCGCCGCAGGAGCGGGGG
GGGGCGGGCCTGTGGCGGGGGTGGCCGATCTCTCCTGGGGCGTCTCGAGC
TCGACGGGCTTGTCGTACGAGCTGACGCGCGTGATGCTGTTGTAGTAATA
CGGCCTGCCGTCGGGAGCTTTGTGCTCCGTCCACGCGTGCATCGCGGGGG
CGGCCGGCGGAGGCATCATCATCGGGGGCATCCCTCCAAAAGCGGGCGGC
TGCTGCCCGTGGCGGTACATGCGGTG
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