mRNA_L-elsbetiae_contig5271.13403.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5271.13403.1
Unique NamemRNA_L-elsbetiae_contig5271.13403.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5271.13403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5271contigL-elsbetiae_contig5271:6904..8318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size393
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816543.9607763-CDS-L-elsbetiae_contig5271:6904..71231622816543.9607763-CDS-L-elsbetiae_contig5271:6904..7123Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5271 6905..7123 -
1691683636.0687072-CDS-L-elsbetiae_contig5271:6904..71231691683636.0687072-CDS-L-elsbetiae_contig5271:6904..7123Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5271 6905..7123 -
1622816543.971489-CDS-L-elsbetiae_contig5271:8147..83181622816543.971489-CDS-L-elsbetiae_contig5271:8147..8318Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5271 8148..8318 -
1691683636.077336-CDS-L-elsbetiae_contig5271:8147..83181691683636.077336-CDS-L-elsbetiae_contig5271:8147..8318Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5271 8148..8318 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5271.13403.1prot_L-elsbetiae_contig5271.13403.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5271 6905..8318 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5271.13403.1

>prot_L-elsbetiae_contig5271.13403.1 ID=prot_L-elsbetiae_contig5271.13403.1|Name=mRNA_L-elsbetiae_contig5271.13403.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
AEKAEFPLQDSADGDGGGGEGKNKDKPVLTKVGHRTKEEKKEASVKMPEG
CEVTGTKQGYAALCGDGQQQQHSSSPAPYPPLSPAAPTAPQDVYLPLPNA
QTLPGLVANFASPATPSPHVPPSATLSAAF
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mRNA from alignment at L-elsbetiae_contig5271:6904..8318-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5271.13403.1 ID=mRNA_L-elsbetiae_contig5271.13403.1|Name=mRNA_L-elsbetiae_contig5271.13403.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1415bp|location=Sequence derived from alignment at L-elsbetiae_contig5271:6904..8318- (Laminarionema elsbetiae ELsaHSoW15)
GCCGAGAAGGCGGAGTTCCCTTTGCAGGATAGCGCGGACGGTGATGGCGG
CGGTGGAGAGGGCAAGAACAAGGACAAGCCCGTGTTGACCAAGGTTGGGC
ACAGGACCAAGGAGGAGAAGAAGGAAGCTTCCGTCAAAATGCCCGAAGGT
TGCGAGGTCACCGGCACGAAGGTATTACTGGCCGCATGAGTCGCGGTCTG
CTACTGTTCTTTGCGTTGTTTTCAGGCACGTGACGATCACAGAGCTGCTT
GACGTGTTTTTTCCTTTTTGGCCTTGGGCAGGTTGGGTCTCCCGGAGGTG
TTGGGTTGATCTTTCTTTCCTATCGTTTGCACGGCGTGAGTACGTGCACA
TGTACGCATGTGCAATTTGCATTTGTGTGCTTTATTTTTTCGTCATCGAC
GCTATTCCGCGGCTGGTATTGCTTTCGTCGATCTTGTTTCGGTGTTTTCT
CAATGATTCCATTGTTATGGTGAAGTGTTTATTGCATGTTCTACATATTT
ATACTCCTAAGAAGTTTTACATCGATTTATGATGTTTGCACATATGTTAT
GTATGCATAGTCCACAGAAGGCGCCACCACTTAAGAACTTACATTCCAAA
ATTTAATACCCTGGGCCGCAATTTGGGCTGTGTGGATAAAGGGCCGCTGC
ACTAAACCCTACTCCTTATATAACTACGCGATGGTACCCTTTTTTTTACA
TCCTCGGAAAAAAGAACCAGGGCCTCGGGTAAGGTGGGAGGTTCTTGAGG
GCGGGCACTCTCTCTGCAGTGCTCGCACGGGTCTCCGTTCATGGTCGGTA
CGCCAAGGCGGCTACGTACCGCATCCAGAGCGTCTCTTCGACAACTGGTG
ACGTCGTGCAGAGTCGCTATGTCGCCATGACTTTGACGGATCGAGTCCAA
ACGAAGTAGCAATAACGAAGAAATCTCGACACTCCTGCGTTCGGTTGAAC
GGGCAAGGCGTTCCGTGTTGTAAATCAAGAGGTTTTGATGGCTGCTACCG
TAGGGCTAGTCTCCTTTCGTTGAAGCGGCGCGACCTGCTTGTTTTTTCGG
AAATTTCGCGAGCATCATAGTTGCGTTTTATCTCTTCGCCGCCTGCACAA
TCGCTGCACGCTTTCTTGCCGTCGTTCACAAGCTTGTCTGCTCTGTCTCT
GTCTCTGTCTCTGTCTGTCTGTCTGTCTTCTCCGCCTTTTCTCAGCAAGG
CTACGCGGCATTGTGCGGAGATGGACAGCAGCAACAGCACAGCAGCAGTC
CTGCACCTTACCCGCCTCTCTCTCCAGCCGCCCCCACCGCACCGCAAGAT
GTGTACCTGCCACTGCCCAATGCGCAAACGCTGCCTGGACTCGTCGCTAA
CTTCGCTTCTCCCGCAACTCCATCACCCCATGTACCACCCTCAGCCACGC
TCTCTGCAGCGTTTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5271:6904..8318-

>mRNA_L-elsbetiae_contig5271.13403.1 ID=mRNA_L-elsbetiae_contig5271.13403.1|Name=mRNA_L-elsbetiae_contig5271.13403.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig5271:6904..8318- (Laminarionema elsbetiae ELsaHSoW15)
GCCGAGAAGGCGGAGTTCCCTTTGCAGGATAGCGCGGACGGTGATGGCGG
CGGTGGAGAGGGCAAGAACAAGGACAAGCCCGTGTTGACCAAGGTTGGGC
ACAGGACCAAGGAGGAGAAGAAGGAAGCTTCCGTCAAAATGCCCGAAGGT
TGCGAGGTCACCGGCACGAAGGCCGAGAAGGCGGAGTTCCCTTTGCAGGA
TAGCGCGGACGGTGATGGCGGCGGTGGAGAGGGCAAGAACAAGGACAAGC
CCGTGTTGACCAAGGTTGGGCACAGGACCAAGGAGGAGAAGAAGGAAGCT
TCCGTCAAAATGCCCGAAGGTTGCGAGGTCACCGGCACGAAGCAAGGCTA
CGCGGCATTGTGCGGAGATGGACAGCAGCAACAGCACAGCAGCAGTCCTG
CACCTTACCCGCCTCTCTCTCCAGCCGCCCCCACCGCACCGCAAGATGTG
TACCTGCCACTGCCCAATGCGCAAACGCTGCCTGGACTCGTCGCTAACTT
CGCTTCTCCCGCAACTCCATCACCCCATGTACCACCCTCAGCCACGCTCT
CTGCAGCGTTTCAAGGCTACGCGGCATTGTGCGGAGATGGACAGCAGCAA
CAGCACAGCAGCAGTCCTGCACCTTACCCGCCTCTCTCTCCAGCCGCCCC
CACCGCACCGCAAGATGTGTACCTGCCACTGCCCAATGCGCAAACGCTGC
CTGGACTCGTCGCTAACTTCGCTTCTCCCGCAACTCCATCACCCCATGTA
CCACCCTCAGCCACGCTCTCTGCAGCGTTT
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