mRNA_L-elsbetiae_contig5271.13402.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5271.13402.1
Unique NamemRNA_L-elsbetiae_contig5271.13402.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5271.13402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5271contigL-elsbetiae_contig5271:6014..6676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size664
Cds size663
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816544.0098312-CDS-L-elsbetiae_contig5271:6013..66761622816544.0098312-CDS-L-elsbetiae_contig5271:6013..6676Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5271 6014..6676 +
1691683636.085482-CDS-L-elsbetiae_contig5271:6013..66761691683636.085482-CDS-L-elsbetiae_contig5271:6013..6676Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5271 6014..6676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5271.13402.1prot_L-elsbetiae_contig5271.13402.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5271 6014..6676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5271.13402.1

>prot_L-elsbetiae_contig5271.13402.1 ID=prot_L-elsbetiae_contig5271.13402.1|Name=mRNA_L-elsbetiae_contig5271.13402.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=221bp
RPLPSAHSPAPLAYPAATAAHLSSRGRPGASATLSVAAAASAPHPTATAV
LAAAVFAAVVATTVALGGIELPPATAAVWGFLPRSALPVLPRVWVSEGTN
AGIHHGCRGTGRRVIAGSGGRGLHGGGGGGGGGVLELLRLVQQRSLAVVE
IFMFSGTVAHLPLALGSHYGSHRGHRRHRLGSRRPNHRRRSGGDSSVSRR
GSGGDHHRWGGRLGSSSSRSL
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mRNA from alignment at L-elsbetiae_contig5271:6014..6676+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5271.13402.1 ID=mRNA_L-elsbetiae_contig5271.13402.1|Name=mRNA_L-elsbetiae_contig5271.13402.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=663bp|location=Sequence derived from alignment at L-elsbetiae_contig5271:6014..6676+ (Laminarionema elsbetiae ELsaHSoW15)
CGTCCTCTGCCCAGCGCCCACTCCCCCGCACCTCTCGCCTACCCGGCTGC
TACAGCCGCGCATCTGTCCAGCAGAGGCCGACCCGGGGCGTCCGCCACCC
TTTCTGTCGCGGCGGCGGCATCTGCTCCGCACCCGACGGCTACCGCCGTG
CTTGCCGCCGCCGTTTTCGCCGCCGTTGTCGCGACTACCGTTGCTCTTGG
CGGGATAGAACTGCCCCCTGCGACAGCTGCTGTATGGGGATTTCTTCCCC
GGTCGGCGCTCCCGGTCCTGCCGAGGGTGTGGGTGAGCGAGGGCACCAAC
GCCGGCATTCATCACGGCTGCCGGGGAACCGGTCGCCGTGTCATCGCCGG
CAGCGGCGGAAGAGGGCTGCACGGCGGCGGCGGCGGCGGTGGCGGCGGCG
TCCTTGAGCTCTTGAGGCTTGTCCAACAGCGAAGCCTTGCCGTCGTTGAA
ATATTTATGTTCTCCGGGACTGTCGCACACCTTCCACTCGCACTTGGGAG
TCACTACGGGAGTCACCGGGGCCATCGGAGACACCGGCTTGGCAGCCGTC
GGCCGAACCATCGCCGCAGGAGCGGAGGGGACAGCAGTGTCAGCAGGCGC
GGGAGCGGCGGTGACCATCATCGCTGGGGTGGTCGGCTTGGCAGCAGCAG
CAGCCGATCTCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5271:6014..6676+

>mRNA_L-elsbetiae_contig5271.13402.1 ID=mRNA_L-elsbetiae_contig5271.13402.1|Name=mRNA_L-elsbetiae_contig5271.13402.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1326bp|location=Sequence derived from alignment at L-elsbetiae_contig5271:6014..6676+ (Laminarionema elsbetiae ELsaHSoW15)
CGTCCTCTGCCCAGCGCCCACTCCCCCGCACCTCTCGCCTACCCGGCTGC
TACAGCCGCGCATCTGTCCAGCAGAGGCCGACCCGGGGCGTCCGCCACCC
TTTCTGTCGCGGCGGCGGCATCTGCTCCGCACCCGACGGCTACCGCCGTG
CTTGCCGCCGCCGTTTTCGCCGCCGTTGTCGCGACTACCGTTGCTCTTGG
CGGGATAGAACTGCCCCCTGCGACAGCTGCTGTATGGGGATTTCTTCCCC
GGTCGGCGCTCCCGGTCCTGCCGAGGGTGTGGGTGAGCGAGGGCACCAAC
GCCGGCATTCATCACGGCTGCCGGGGAACCGGTCGCCGTGTCATCGCCGG
CAGCGGCGGAAGAGGGCTGCACGGCGGCGGCGGCGGCGGTGGCGGCGGCG
TCCTTGAGCTCTTGAGGCTTGTCCAACAGCGAAGCCTTGCCGTCGTTGAA
ATATTTATGTTCTCCGGGACTGTCGCACACCTTCCACTCGCACTTGGGAG
TCACTACGGGAGTCACCGGGGCCATCGGAGACACCGGCTTGGCAGCCGTC
GGCCGAACCATCGCCGCAGGAGCGGAGGGGACAGCAGTGTCAGCAGGCGC
GGGAGCGGCGGTGACCATCATCGCTGGGGTGGTCGGCTTGGCAGCAGCAG
CAGCCGATCTCTCCGTCCTCTGCCCAGCGCCCACTCCCCCGCACCTCTCG
CCTACCCGGCTGCTACAGCCGCGCATCTGTCCAGCAGAGGCCGACCCGGG
GCGTCCGCCACCCTTTCTGTCGCGGCGGCGGCATCTGCTCCGCACCCGAC
GGCTACCGCCGTGCTTGCCGCCGCCGTTTTCGCCGCCGTTGTCGCGACTA
CCGTTGCTCTTGGCGGGATAGAACTGCCCCCTGCGACAGCTGCTGTATGG
GGATTTCTTCCCCGGTCGGCGCTCCCGGTCCTGCCGAGGGTGTGGGTGAG
CGAGGGCACCAACGCCGGCATTCATCACGGCTGCCGGGGAACCGGTCGCC
GTGTCATCGCCGGCAGCGGCGGAAGAGGGCTGCACGGCGGCGGCGGCGGC
GGTGGCGGCGGCGTCCTTGAGCTCTTGAGGCTTGTCCAACAGCGAAGCCT
TGCCGTCGTTGAAATATTTATGTTCTCCGGGACTGTCGCACACCTTCCAC
TCGCACTTGGGAGTCACTACGGGAGTCACCGGGGCCATCGGAGACACCGG
CTTGGCAGCCGTCGGCCGAACCATCGCCGCAGGAGCGGAGGGGACAGCAG
TGTCAGCAGGCGCGGGAGCGGCGGTGACCATCATCGCTGGGGTGGTCGGC
TTGGCAGCAGCAGCAGCCGATCTCTC
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