mRNA_L-elsbetiae_contig5268.13395.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5268.13395.1
Unique NamemRNA_L-elsbetiae_contig5268.13395.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5268.13395.1 vs. uniprot
Match: A0A6H5JH17_9PHAE (Clu domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH17_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 2.000e-6
Identity = 26/33 (78.79%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:  145 MQVRQLLAEIPQTCLYSAFRLVAVTPKGGGDDE 243
            MQVRQLL EIPQTCLYSAFRLVA+TP+  G +E
Sbjct:    1 MQVRQLLGEIPQTCLYSAFRLVALTPEPEGTEE 33
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5268.13395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JH17_9PHAE2.000e-678.79Clu domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5268contigL-elsbetiae_contig5268:11270..11527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue6.8e-11
Seed eggNOG ortholog2880.D7G8X4
KEGG koko:K03255
Hectar predicted targeting categoryother localisation
EggNOG free text desc.intracellular distribution of mitochondria
EggNOG OGsKOG1839@1,KOG1839@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_000620.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Exons1
Model size260
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816543.2116246-CDS-L-elsbetiae_contig5268:11269..115271622816543.2116246-CDS-L-elsbetiae_contig5268:11269..11527Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5268 11270..11527 +
1691683635.476134-CDS-L-elsbetiae_contig5268:11269..115271691683635.476134-CDS-L-elsbetiae_contig5268:11269..11527Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5268 11270..11527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5268.13395.1prot_L-elsbetiae_contig5268.13395.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5268 11270..11527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5268.13395.1

>prot_L-elsbetiae_contig5268.13395.1 ID=prot_L-elsbetiae_contig5268.13395.1|Name=mRNA_L-elsbetiae_contig5268.13395.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=86bp
GGGQGGEEEEEEEMAVFITVHPPLIPTTTGAAAAPPLVLEPLAGMELVMQ
VRQLLAEIPQTCLYSAFRLVAVTPKGGGDDEKKGDG
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mRNA from alignment at L-elsbetiae_contig5268:11270..11527+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5268.13395.1 ID=mRNA_L-elsbetiae_contig5268.13395.1|Name=mRNA_L-elsbetiae_contig5268.13395.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=258bp|location=Sequence derived from alignment at L-elsbetiae_contig5268:11270..11527+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGGCGGGCAAGGGGGAGAGGAGGAGGAGGAGGAGGAAATGGCGGTGTT
CATCACGGTCCACCCCCCCCTCATCCCGACCACGACGGGCGCGGCGGCCG
CGCCGCCGCTCGTGCTGGAGCCCCTCGCGGGCATGGAGCTCGTGATGCAG
GTCCGGCAGCTGCTGGCGGAGATCCCGCAGACGTGCCTCTACTCGGCGTT
CCGGCTGGTGGCGGTGACGCCCAAGGGGGGTGGCGATGACGAGAAGAAGG
GGGACGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5268:11270..11527+

>mRNA_L-elsbetiae_contig5268.13395.1 ID=mRNA_L-elsbetiae_contig5268.13395.1|Name=mRNA_L-elsbetiae_contig5268.13395.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig5268:11270..11527+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGGCGGGCAAGGGGGAGAGGAGGAGGAGGAGGAGGAAATGGCGGTGTT
CATCACGGTCCACCCCCCCCTCATCCCGACCACGACGGGCGCGGCGGCCG
CGCCGCCGCTCGTGCTGGAGCCCCTCGCGGGCATGGAGCTCGTGATGCAG
GTCCGGCAGCTGCTGGCGGAGATCCCGCAGACGTGCCTCTACTCGGCGTT
CCGGCTGGTGGCGGTGACGCCCAAGGGGGGTGGCGATGACGAGAAGAAGG
GGGACGGGGGAGGCGGGCAAGGGGGAGAGGAGGAGGAGGAGGAGGAAATG
GCGGTGTTCATCACGGTCCACCCCCCCCTCATCCCGACCACGACGGGCGC
GGCGGCCGCGCCGCCGCTCGTGCTGGAGCCCCTCGCGGGCATGGAGCTCG
TGATGCAGGTCCGGCAGCTGCTGGCGGAGATCCCGCAGACGTGCCTCTAC
TCGGCGTTCCGGCTGGTGGCGGTGACGCCCAAGGGGGGTGGCGATGACGA
GAAGAAGGGGGACGGG
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