mRNA_L-elsbetiae_contig5266.13392.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5266.13392.1 vs. uniprot
Match: A0A6H5KJ55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ55_9PHAE) HSP 1 Score: 196 bits (499), Expect = 8.020e-54 Identity = 110/191 (57.59%), Postives = 116/191 (60.73%), Query Frame = 2 Query: 197 EKRRKLPRFYPAPGWLRVALASGFRVRGISINPGIPGFPCVFHPHRSMEGTHPPYIAIAGDCSQSAYVLRPPXXXXXXXXXEEA---EVVGSWEREAAPLSYEIACAIEVPGTVGSLAVGYGPLLG-GGTVGGV-----PEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDGWAKQFVPNHDGN 742 E R LPRFYPAPGWLR LASGFRVRGISINPG PGFP +FHPHRSMEG PPYIAIAGDCSQSAY+LRP E G+WE+EAAPL YEIACAIEVPGTVGSLAV YG LLG GT+ G P P G DGWAK FVPN+DGN Sbjct: 1014 EDWRMLPRFYPAPGWLRATLASGFRVRGISINPGTPGFPYLFHPHRSMEGKQPPYIAIAGDCSQSAYILRPAPAASGSAGTAAGGGPETKGAWEQEAAPLGYEIACAIEVPGTVGSLAVSYGQLLGEDGTMEGFDTAEPPSPPHPPVASPEVFLEGAGRRRREEGVRPSPQPQRRGADGWAKLFVPNYDGN 1204
BLAST of mRNA_L-elsbetiae_contig5266.13392.1 vs. uniprot
Match: A0A836CJ47_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ47_9STRA) HSP 1 Score: 117 bits (294), Expect = 5.540e-27 Identity = 68/129 (52.71%), Postives = 79/129 (61.24%), Query Frame = 2 Query: 206 RKLPRFYPAPGWLRVALASGFRVRGISINPGIPGFPCVFHP-HRSMEGTHP---PYIAIAGDCSQSAYVLRPPXXXXXXXXXEEAEVVGSWEREAAPLSYEIACAIEVPGTVGSLAVGYGPLLGGGTVG 580 R PR YP+PGW R +ASGFRV+G+ INPG PGF +FHP HR+ E P PYIA+AGDCSQ+AYVLRP VG L YE+ C I+ GTVGSLAV +GPL GGG G Sbjct: 253 RVYPRVYPSPGWKRTTIASGFRVKGLGINPGAPGFSYIFHPNHRAGEPAPPGARPYIALAGDCSQAAYVLRPCG-------------VG--------LDYELVCRIDCEGTVGSLAVSHGPLCGGGDDG 360
BLAST of mRNA_L-elsbetiae_contig5266.13392.1 vs. uniprot
Match: D7FTN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN5_ECTSI) HSP 1 Score: 90.1 bits (222), Expect = 6.350e-17 Identity = 41/49 (83.67%), Postives = 42/49 (85.71%), Query Frame = 2 Query: 197 EKRRKLPRFYPAPGWLRVALASGFRVRGISINPGIPGFPCVFHPHRSME 343 E R LPRFYPAPGWLR LASGFRVRGISINPG PGFP +FHPHRSME Sbjct: 672 EDWRMLPRFYPAPGWLRATLASGFRVRGISINPGTPGFPYLFHPHRSME 720
BLAST of mRNA_L-elsbetiae_contig5266.13392.1 vs. uniprot
Match: A0A7S4CRI4_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CRI4_9EUGL) HSP 1 Score: 87.4 bits (215), Expect = 3.020e-16 Identity = 51/107 (47.66%), Postives = 61/107 (57.01%), Query Frame = 2 Query: 233 PGWLRVALASGFRVRGISINPGIPGFPCVFHPHRSM-EGTHPPYIAIAGDCSQSAYVLRPPXXXXXXXXXEEAEVVGSWEREAAPLSYEIACAIEVPGTVGSLAVGY 550 P W R LASGF+V+ +SINPG PGF FHPH M E PP+I +AGDCS +AYV RP +E E L Y++ I V GTVGS+AVGY Sbjct: 288 PQWKRTTLASGFKVKRLSINPGAPGFVYPFHPHVKMKEQGAPPHILLAGDCSDAAYVYRP-------TFSDEGE-----------LQYDLMATIGVDGTVGSIAVGY 376
BLAST of mRNA_L-elsbetiae_contig5266.13392.1 vs. uniprot
Match: A0A7S4DAE7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAE7_HETAK) HSP 1 Score: 85.5 bits (210), Expect = 2.350e-15 Identity = 53/112 (47.32%), Postives = 66/112 (58.93%), Query Frame = 2 Query: 236 GWLRVALASGFRV-----RGISINPGIPGFPCVFHPHR--SMEGTHPPYIAIAGDCSQSAYVLRPPXXXXXXXXXEEAEVVGSWEREAAPLSYEIACAIEVPGTVGSLAVGY 550 GW R ALASGFRV RG NPG PGF FHP R + EG PPYIA+AGDC+Q+AY+L P ++++ G + + A YE+ C I GTVGSLA G+ Sbjct: 411 GWERRALASGFRVHQDQPRGF--NPGAPGFVYAFHPTRRAAREGKDPPYIAVAGDCAQAAYILAP------AARHDKSDSGGGYSIQKAA-DYEMLCMISCGGTVGSLAFGF 513
BLAST of mRNA_L-elsbetiae_contig5266.13392.1 vs. uniprot
Match: A0A4D9DCX2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DCX2_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 2.960e-14 Identity = 52/110 (47.27%), Postives = 61/110 (55.45%), Query Frame = 2 Query: 239 WLRVALASGFRVRGIS-INPGIPGFPCVFHPHRSMEGT--HPPYIAIAGDCSQSAYVLRPPXXXXXXXXXEEAEVVGSWEREAAPLSYEIACAIEVPGTVGSLAVGYGPL 559 W R LA+GF V+ INPG PGFP VF+PHRS+ G PYI +AGDCS +AY+ RP +EAEV YE I GTVGSLAVG+ PL Sbjct: 812 WKRSTLATGFHVKNWGQINPGAPGFPYVFYPHRSLRGQPGQRPYILLAGDCSHAAYIYRP-VLGRDGGGGDEAEV-----------QYEPMAQINCGGTVGSLAVGHLPL 909
BLAST of mRNA_L-elsbetiae_contig5266.13392.1 vs. uniprot
Match: A0A7S1TPM8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPM8_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 4.760e-14 Identity = 52/119 (43.70%), Postives = 63/119 (52.94%), Query Frame = 2 Query: 224 YPAPGWLRVALASGFRVRGISINPGIPGFPCVFHPHRSME--------GTHPPYIAIAGDCSQSAYVLRPPXXXXXXXXXEEAEVVGSWEREAAPLS-YEIACAIEVPGTVGSLAVGYG 553 YP G LR +ASGFRVRG+SINPG PGF F+P R + G PY+ +AGDC+Q+AYVL+P RE Y++ IEV G VGSLAV YG Sbjct: 468 YPIGGGLRHIVASGFRVRGLSINPGAPGFVYAFYPRRRHDPEVSGAQGGDAKPYLLLAGDCAQAAYVLKP--------------------REGGGADDYDVQGVIEVNGAVGSLAVCYG 566
BLAST of mRNA_L-elsbetiae_contig5266.13392.1 vs. uniprot
Match: A0A7R9U642_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U642_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 1.530e-13 Identity = 48/111 (43.24%), Postives = 57/111 (51.35%), Query Frame = 2 Query: 245 RVALASGFRVRGISINPGIPGFPCVFHPHRSMEGTHP--------PYIAIAGDCSQSAYVLRPPXXXXXXXXXEEAEVVGSWEREAAPLSYEIACAIEVPGTVGSLAVGYG 553 R LASGFRVRGISINPG PGF F+P R + H P++ +AGDC+Q+AYVL P P Y++ IEV G VGSLAV YG Sbjct: 54 RKVLASGFRVRGISINPGAPGFVYSFYPRRRDDPNHGGENPAEIRPHLLLAGDCAQAAYVLMP-------------------REGGGPDCYDVLDVIEVDGAVGSLAVCYG 145
BLAST of mRNA_L-elsbetiae_contig5266.13392.1 vs. uniprot
Match: A0A7S3V9N2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V9N2_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 2.620e-9 Identity = 43/112 (38.39%), Postives = 57/112 (50.89%), Query Frame = 2 Query: 239 WLRVALASGFRVRGI---SINPGIPGFPCVFHPHR-----SMEGTHPPYIAIAGDCSQSAYVLRPPXXXXXXXXXEEAEVVGSWEREAAPLSYEIACAIEVPGTVGSLAVGY 550 WLR +A+GFRV+G INPG PGF F+P R S + P I IAGDC+++AY+LRP S E +Y + C I+ TVGS+ +GY Sbjct: 704 WLRTVIATGFRVKGQLGNMINPGAPGFCYTFYPTRQGPKASNKMLSRPLIGIAGDCAETAYILRPSD---------------STSGEDPSSNYIMMCEIDCSATVGSIGIGY 800
BLAST of mRNA_L-elsbetiae_contig5266.13392.1 vs. uniprot
Match: K0RTF0_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RTF0_THAOC) HSP 1 Score: 67.0 bits (162), Expect = 4.140e-9 Identity = 41/107 (38.32%), Postives = 57/107 (53.27%), Query Frame = 2 Query: 239 WLRVALASGFRVRGI---SINPGIPGFPCVFHPHRSMEGTHPPYIAIAGDCSQSAYVLRPPXXXXXXXXXEEAEVVGSWEREAAPLSYEIACAIEVPGTVGSLAVGY 550 W R +A+GF+V+G I+PG PGF F P P I +AGDC+QSAY+L+P + +V+ ++A Y + C I+ TVGSLAVGY Sbjct: 393 WRRSVVATGFKVQGQLGNMISPGAPGFAYTFFPTLDTTRWRRPLIGLAGDCAQSAYILKP-----VEVPDDSRDVIEEVIDKSA--KYNLMCEIKCEATVGSLAVGY 492 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5266.13392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5266.13392.1 >prot_L-elsbetiae_contig5266.13392.1 ID=prot_L-elsbetiae_contig5266.13392.1|Name=mRNA_L-elsbetiae_contig5266.13392.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=136bp MEGTHPPYIAIAGDCSQSAYVLRPPAAAAAAAKQEEAEVVGSWEREAAPLback to top mRNA from alignment at L-elsbetiae_contig5266:299..1590+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5266.13392.1 ID=mRNA_L-elsbetiae_contig5266.13392.1|Name=mRNA_L-elsbetiae_contig5266.13392.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1292bp|location=Sequence derived from alignment at L-elsbetiae_contig5266:299..1590+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5266:299..1590+ >mRNA_L-elsbetiae_contig5266.13392.1 ID=mRNA_L-elsbetiae_contig5266.13392.1|Name=mRNA_L-elsbetiae_contig5266.13392.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=816bp|location=Sequence derived from alignment at L-elsbetiae_contig5266:299..1590+ (Laminarionema elsbetiae ELsaHSoW15)back to top |