mRNA_L-elsbetiae_contig5266.13392.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5266.13392.1
Unique NamemRNA_L-elsbetiae_contig5266.13392.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5266.13392.1 vs. uniprot
Match: A0A6H5KJ55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ55_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 8.020e-54
Identity = 110/191 (57.59%), Postives = 116/191 (60.73%), Query Frame = 2
Query:  197 EKRRKLPRFYPAPGWLRVALASGFRVRGISINPGIPGFPCVFHPHRSMEGTHPPYIAIAGDCSQSAYVLRPPXXXXXXXXXEEA---EVVGSWEREAAPLSYEIACAIEVPGTVGSLAVGYGPLLG-GGTVGGV-----PEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDGWAKQFVPNHDGN 742
            E  R LPRFYPAPGWLR  LASGFRVRGISINPG PGFP +FHPHRSMEG  PPYIAIAGDCSQSAY+LRP                E  G+WE+EAAPL YEIACAIEVPGTVGSLAV YG LLG  GT+ G      P P                                 G DGWAK FVPN+DGN
Sbjct: 1014 EDWRMLPRFYPAPGWLRATLASGFRVRGISINPGTPGFPYLFHPHRSMEGKQPPYIAIAGDCSQSAYILRPAPAASGSAGTAAGGGPETKGAWEQEAAPLGYEIACAIEVPGTVGSLAVSYGQLLGEDGTMEGFDTAEPPSPPHPPVASPEVFLEGAGRRRREEGVRPSPQPQRRGADGWAKLFVPNYDGN 1204          
BLAST of mRNA_L-elsbetiae_contig5266.13392.1 vs. uniprot
Match: A0A836CJ47_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ47_9STRA)

HSP 1 Score: 117 bits (294), Expect = 5.540e-27
Identity = 68/129 (52.71%), Postives = 79/129 (61.24%), Query Frame = 2
Query:  206 RKLPRFYPAPGWLRVALASGFRVRGISINPGIPGFPCVFHP-HRSMEGTHP---PYIAIAGDCSQSAYVLRPPXXXXXXXXXEEAEVVGSWEREAAPLSYEIACAIEVPGTVGSLAVGYGPLLGGGTVG 580
            R  PR YP+PGW R  +ASGFRV+G+ INPG PGF  +FHP HR+ E   P   PYIA+AGDCSQ+AYVLRP               VG        L YE+ C I+  GTVGSLAV +GPL GGG  G
Sbjct:  253 RVYPRVYPSPGWKRTTIASGFRVKGLGINPGAPGFSYIFHPNHRAGEPAPPGARPYIALAGDCSQAAYVLRPCG-------------VG--------LDYELVCRIDCEGTVGSLAVSHGPLCGGGDDG 360          
BLAST of mRNA_L-elsbetiae_contig5266.13392.1 vs. uniprot
Match: D7FTN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN5_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 6.350e-17
Identity = 41/49 (83.67%), Postives = 42/49 (85.71%), Query Frame = 2
Query:  197 EKRRKLPRFYPAPGWLRVALASGFRVRGISINPGIPGFPCVFHPHRSME 343
            E  R LPRFYPAPGWLR  LASGFRVRGISINPG PGFP +FHPHRSME
Sbjct:  672 EDWRMLPRFYPAPGWLRATLASGFRVRGISINPGTPGFPYLFHPHRSME 720          
BLAST of mRNA_L-elsbetiae_contig5266.13392.1 vs. uniprot
Match: A0A7S4CRI4_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CRI4_9EUGL)

HSP 1 Score: 87.4 bits (215), Expect = 3.020e-16
Identity = 51/107 (47.66%), Postives = 61/107 (57.01%), Query Frame = 2
Query:  233 PGWLRVALASGFRVRGISINPGIPGFPCVFHPHRSM-EGTHPPYIAIAGDCSQSAYVLRPPXXXXXXXXXEEAEVVGSWEREAAPLSYEIACAIEVPGTVGSLAVGY 550
            P W R  LASGF+V+ +SINPG PGF   FHPH  M E   PP+I +AGDCS +AYV RP          +E E           L Y++   I V GTVGS+AVGY
Sbjct:  288 PQWKRTTLASGFKVKRLSINPGAPGFVYPFHPHVKMKEQGAPPHILLAGDCSDAAYVYRP-------TFSDEGE-----------LQYDLMATIGVDGTVGSIAVGY 376          
BLAST of mRNA_L-elsbetiae_contig5266.13392.1 vs. uniprot
Match: A0A7S4DAE7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAE7_HETAK)

HSP 1 Score: 85.5 bits (210), Expect = 2.350e-15
Identity = 53/112 (47.32%), Postives = 66/112 (58.93%), Query Frame = 2
Query:  236 GWLRVALASGFRV-----RGISINPGIPGFPCVFHPHR--SMEGTHPPYIAIAGDCSQSAYVLRPPXXXXXXXXXEEAEVVGSWEREAAPLSYEIACAIEVPGTVGSLAVGY 550
            GW R ALASGFRV     RG   NPG PGF   FHP R  + EG  PPYIA+AGDC+Q+AY+L P          ++++  G +  + A   YE+ C I   GTVGSLA G+
Sbjct:  411 GWERRALASGFRVHQDQPRGF--NPGAPGFVYAFHPTRRAAREGKDPPYIAVAGDCAQAAYILAP------AARHDKSDSGGGYSIQKAA-DYEMLCMISCGGTVGSLAFGF 513          
BLAST of mRNA_L-elsbetiae_contig5266.13392.1 vs. uniprot
Match: A0A4D9DCX2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DCX2_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.960e-14
Identity = 52/110 (47.27%), Postives = 61/110 (55.45%), Query Frame = 2
Query:  239 WLRVALASGFRVRGIS-INPGIPGFPCVFHPHRSMEGT--HPPYIAIAGDCSQSAYVLRPPXXXXXXXXXEEAEVVGSWEREAAPLSYEIACAIEVPGTVGSLAVGYGPL 559
            W R  LA+GF V+    INPG PGFP VF+PHRS+ G     PYI +AGDCS +AY+ RP          +EAEV            YE    I   GTVGSLAVG+ PL
Sbjct:  812 WKRSTLATGFHVKNWGQINPGAPGFPYVFYPHRSLRGQPGQRPYILLAGDCSHAAYIYRP-VLGRDGGGGDEAEV-----------QYEPMAQINCGGTVGSLAVGHLPL 909          
BLAST of mRNA_L-elsbetiae_contig5266.13392.1 vs. uniprot
Match: A0A7S1TPM8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPM8_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 4.760e-14
Identity = 52/119 (43.70%), Postives = 63/119 (52.94%), Query Frame = 2
Query:  224 YPAPGWLRVALASGFRVRGISINPGIPGFPCVFHPHRSME--------GTHPPYIAIAGDCSQSAYVLRPPXXXXXXXXXEEAEVVGSWEREAAPLS-YEIACAIEVPGTVGSLAVGYG 553
            YP  G LR  +ASGFRVRG+SINPG PGF   F+P R  +        G   PY+ +AGDC+Q+AYVL+P                    RE      Y++   IEV G VGSLAV YG
Sbjct:  468 YPIGGGLRHIVASGFRVRGLSINPGAPGFVYAFYPRRRHDPEVSGAQGGDAKPYLLLAGDCAQAAYVLKP--------------------REGGGADDYDVQGVIEVNGAVGSLAVCYG 566          
BLAST of mRNA_L-elsbetiae_contig5266.13392.1 vs. uniprot
Match: A0A7R9U642_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U642_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.530e-13
Identity = 48/111 (43.24%), Postives = 57/111 (51.35%), Query Frame = 2
Query:  245 RVALASGFRVRGISINPGIPGFPCVFHPHRSMEGTHP--------PYIAIAGDCSQSAYVLRPPXXXXXXXXXEEAEVVGSWEREAAPLSYEIACAIEVPGTVGSLAVGYG 553
            R  LASGFRVRGISINPG PGF   F+P R  +  H         P++ +AGDC+Q+AYVL P                        P  Y++   IEV G VGSLAV YG
Sbjct:   54 RKVLASGFRVRGISINPGAPGFVYSFYPRRRDDPNHGGENPAEIRPHLLLAGDCAQAAYVLMP-------------------REGGGPDCYDVLDVIEVDGAVGSLAVCYG 145          
BLAST of mRNA_L-elsbetiae_contig5266.13392.1 vs. uniprot
Match: A0A7S3V9N2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V9N2_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.620e-9
Identity = 43/112 (38.39%), Postives = 57/112 (50.89%), Query Frame = 2
Query:  239 WLRVALASGFRVRGI---SINPGIPGFPCVFHPHR-----SMEGTHPPYIAIAGDCSQSAYVLRPPXXXXXXXXXEEAEVVGSWEREAAPLSYEIACAIEVPGTVGSLAVGY 550
            WLR  +A+GFRV+G     INPG PGF   F+P R     S +    P I IAGDC+++AY+LRP                 S   E    +Y + C I+   TVGS+ +GY
Sbjct:  704 WLRTVIATGFRVKGQLGNMINPGAPGFCYTFYPTRQGPKASNKMLSRPLIGIAGDCAETAYILRPSD---------------STSGEDPSSNYIMMCEIDCSATVGSIGIGY 800          
BLAST of mRNA_L-elsbetiae_contig5266.13392.1 vs. uniprot
Match: K0RTF0_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RTF0_THAOC)

HSP 1 Score: 67.0 bits (162), Expect = 4.140e-9
Identity = 41/107 (38.32%), Postives = 57/107 (53.27%), Query Frame = 2
Query:  239 WLRVALASGFRVRGI---SINPGIPGFPCVFHPHRSMEGTHPPYIAIAGDCSQSAYVLRPPXXXXXXXXXEEAEVVGSWEREAAPLSYEIACAIEVPGTVGSLAVGY 550
            W R  +A+GF+V+G     I+PG PGF   F P         P I +AGDC+QSAY+L+P          +  +V+     ++A   Y + C I+   TVGSLAVGY
Sbjct:  393 WRRSVVATGFKVQGQLGNMISPGAPGFAYTFFPTLDTTRWRRPLIGLAGDCAQSAYILKP-----VEVPDDSRDVIEEVIDKSA--KYNLMCEIKCEATVGSLAVGY 492          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5266.13392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KJ55_9PHAE8.020e-5457.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CJ47_9STRA5.540e-2752.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FTN5_ECTSI6.350e-1783.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4CRI4_9EUGL3.020e-1647.66Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S4DAE7_HETAK2.350e-1547.32Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9DCX2_9STRA2.960e-1447.27Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S1TPM8_9STRA4.760e-1443.70Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9U642_9STRA1.530e-1343.24Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3V9N2_9STRA2.620e-938.39Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
K0RTF0_THAOC4.140e-938.32Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5266contigL-elsbetiae_contig5266:299..1590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size747
Cds size408
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5266.13392.1prot_L-elsbetiae_contig5266.13392.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5266 636..1590 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816543.0011394-UTR-L-elsbetiae_contig5266:298..6351622816543.0011394-UTR-L-elsbetiae_contig5266:298..635Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5266 299..635 +
1691683635.3628342-UTR-L-elsbetiae_contig5266:298..6351691683635.3628342-UTR-L-elsbetiae_contig5266:298..635Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5266 299..635 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816543.0114286-CDS-L-elsbetiae_contig5266:635..6411622816543.0114286-CDS-L-elsbetiae_contig5266:635..641Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5266 636..641 +
1691683635.372497-CDS-L-elsbetiae_contig5266:635..6411691683635.372497-CDS-L-elsbetiae_contig5266:635..641Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5266 636..641 +
1622816543.023219-CDS-L-elsbetiae_contig5266:1188..15901622816543.023219-CDS-L-elsbetiae_contig5266:1188..1590Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5266 1189..1590 +
1691683635.381057-CDS-L-elsbetiae_contig5266:1188..15901691683635.381057-CDS-L-elsbetiae_contig5266:1188..1590Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5266 1189..1590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5266.13392.1

>prot_L-elsbetiae_contig5266.13392.1 ID=prot_L-elsbetiae_contig5266.13392.1|Name=mRNA_L-elsbetiae_contig5266.13392.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=136bp
MEGTHPPYIAIAGDCSQSAYVLRPPAAAAAAAKQEEAEVVGSWEREAAPL
SYEIACAIEVPGTVGSLAVGYGPLLGGGTVGGVPEPPVLQPPTVAAAAAA
ASRSVCFVPEEEGRRRRRRGGDGWAKQFVPNHDGNW
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mRNA from alignment at L-elsbetiae_contig5266:299..1590+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5266.13392.1 ID=mRNA_L-elsbetiae_contig5266.13392.1|Name=mRNA_L-elsbetiae_contig5266.13392.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1292bp|location=Sequence derived from alignment at L-elsbetiae_contig5266:299..1590+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGCGCAACTCCCCCAATGTTTTGAGCGGCCAGCCGCGGCGTGCCAGCA ACCCAGCTGATATCCGTCCCTAGTCTCAAAGCGCCGGTTTTCTTCTCCTG CGGCGAACCGTTAATTGACCGTCTCTAAATTTCCCTTATTTTCTCCTTCT CGCCTCTCCCCCTCTCCCCCCCCCTCGCCCTTGTGTCTTCCGCGCCGAAA AAAGGCGCAAGCTGCCGAGGTTCTACCCCGCCCCGGGCTGGCTGCGCGTT GCCCTCGCCAGCGGCTTCCGGGTGCGGGGGATCAGCATCAACCCCGGGAT CCCCGGGTTCCCGTGCGTGTTCCATCCGCACCGAAGCATGGAGGTGCGCT TTCCCTCCCTGGTGCGGCCGCGTGCGGCCGCGCGCAGCTGTGTTTTCGCT CTCTCTCTCTCTCTTTCCCCGTATGCCGGTCAGAATGTAAGCATGCCGAG GCTGAGAGCGGCTTTTGGATGCGCCGCAGCTTTTCACTAAAGTATACAAC AAGCTTTTGTCGTGGGCTTTGGGGTAGGTCTGTTTGTTCTACCCGCCCCC GCGTGGTTTGAAGTGTCAAAAAGGTGCGAGTTTGACTGCGCAGCAGACGC ACGGCATAAAGGTTGTAAACTTTTCTTCAAAAACAAAAAAAAGCCTACTG TTTGTTTCCAGCGATGGGTTCTGTGTCACAGGTTGTGTCGGGGGTTGGAT TAAACCTCGATGCCTTCGTGTGTTGTCGTCTTATGTGGAGCGGCACCAAC CACACCGCCGGCACGCTTCGTATTCTTCAGCGCGGCCGGCTTGCGTGTTT TTTGTGGCCACACGATCCTCGCCCGTGCCCTAACCCCGTCTCCCCTCCCA CCCCGCTCTATGCACCCCACCCCCGCCCTCTTGCGAGCAGGGCACACACC CTCCATACATCGCCATCGCAGGAGACTGCTCCCAGTCGGCGTACGTCCTT CGTCCGCCGGCGGCGGCGGCGGCAGCGGCGAAGCAGGAGGAGGCGGAGGT GGTCGGGTCCTGGGAGCGAGAGGCCGCGCCGCTCTCGTACGAGATAGCCT GCGCGATAGAGGTGCCCGGCACGGTGGGCTCCCTGGCGGTGGGGTACGGC CCCCTGCTCGGAGGGGGCACTGTCGGCGGGGTGCCGGAGCCCCCCGTCCT GCAACCGCCGACTGTGGCGGCGGCGGCGGCGGCGGCATCTCGGTCGGTTT GTTTTGTGCCGGAGGAAGAAGGGCGGCGGCGGCGGCGGCGGGGTGGCGAC GGGTGGGCAAAGCAGTTCGTGCCCAACCACGACGGGAACTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5266:299..1590+

>mRNA_L-elsbetiae_contig5266.13392.1 ID=mRNA_L-elsbetiae_contig5266.13392.1|Name=mRNA_L-elsbetiae_contig5266.13392.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=816bp|location=Sequence derived from alignment at L-elsbetiae_contig5266:299..1590+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGATGGAGGGCACACACCCTCCATACATCGCCATCGCAGGAGACTG
CTCCCAGTCGGCGTACGTCCTTCGTCCGCCGGCGGCGGCGGCGGCAGCGG
CGAAGCAGGAGGAGGCGGAGGTGGTCGGGTCCTGGGAGCGAGAGGCCGCG
CCGCTCTCGTACGAGATAGCCTGCGCGATAGAGGTGCCCGGCACGGTGGG
CTCCCTGGCGGTGGGGTACGGCCCCCTGCTCGGAGGGGGCACTGTCGGCG
GGGTGCCGGAGCCCCCCGTCCTGCAACCGCCGACTGTGGCGGCGGCGGCG
GCGGCGGCATCTCGGTCGGTTTGTTTTGTGCCGGAGGAAGAAGGGCGGCG
GCGGCGGCGGCGGGGTGGCGACGGGTGGGCAAAGCAGTTCGTGCCCAACC
ACGACGGGAACTGGGGCACACACCCTCCATACATCGCCATCGCAGGAGAC
TGCTCCCAGTCGGCGTACGTCCTTCGTCCGCCGGCGGCGGCGGCGGCAGC
GGCGAAGCAGGAGGAGGCGGAGGTGGTCGGGTCCTGGGAGCGAGAGGCCG
CGCCGCTCTCGTACGAGATAGCCTGCGCGATAGAGGTGCCCGGCACGGTG
GGCTCCCTGGCGGTGGGGTACGGCCCCCTGCTCGGAGGGGGCACTGTCGG
CGGGGTGCCGGAGCCCCCCGTCCTGCAACCGCCGACTGTGGCGGCGGCGG
CGGCGGCGGCATCTCGGTCGGTTTGTTTTGTGCCGGAGGAAGAAGGGCGG
CGGCGGCGGCGGCGGGGTGGCGACGGGTGGGCAAAGCAGTTCGTGCCCAA
CCACGACGGGAACTGG
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