mRNA_L-elsbetiae_contig5265.13390.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5265.13390.1
Unique NamemRNA_L-elsbetiae_contig5265.13390.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5265.13390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5265contigL-elsbetiae_contig5265:2..570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size569
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5265.13390.1prot_L-elsbetiae_contig5265.13390.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5265 37..369 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816542.7371926-UTR-L-elsbetiae_contig5265:1..361622816542.7371926-UTR-L-elsbetiae_contig5265:1..36Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5265 2..36 +
1691683635.1607802-UTR-L-elsbetiae_contig5265:1..361691683635.1607802-UTR-L-elsbetiae_contig5265:1..36Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5265 2..36 +
1622816542.7627292-UTR-L-elsbetiae_contig5265:369..5701622816542.7627292-UTR-L-elsbetiae_contig5265:369..570Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5265 370..570 +
1691683635.1819532-UTR-L-elsbetiae_contig5265:369..5701691683635.1819532-UTR-L-elsbetiae_contig5265:369..570Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5265 370..570 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816542.7487948-CDS-L-elsbetiae_contig5265:36..3691622816542.7487948-CDS-L-elsbetiae_contig5265:36..369Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5265 37..369 +
1691683635.1732864-CDS-L-elsbetiae_contig5265:36..3691691683635.1732864-CDS-L-elsbetiae_contig5265:36..369Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5265 37..369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5265.13390.1

>prot_L-elsbetiae_contig5265.13390.1 ID=prot_L-elsbetiae_contig5265.13390.1|Name=mRNA_L-elsbetiae_contig5265.13390.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
MPGRRQTDAESLLQFSRRVWEARLRISIAIYSTWRYIGLGGCLSIFLPSG
MYSTFCFSKTLSGFCLARTCIHVFVLLFSAGVSLVFVTTGPHGYTRLGVE
KANVSNNKRR*
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mRNA from alignment at L-elsbetiae_contig5265:2..570+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5265.13390.1 ID=mRNA_L-elsbetiae_contig5265.13390.1|Name=mRNA_L-elsbetiae_contig5265.13390.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=569bp|location=Sequence derived from alignment at L-elsbetiae_contig5265:2..570+ (Laminarionema elsbetiae ELsaHSoW15)
GCACCCCTGGAGTAAGTGCGGCGCGGGTTGAAAGGATGCCTGGTCGGCGA
CAAACCGACGCGGAATCCCTTTTGCAATTTAGTAGACGGGTGTGGGAAGC
ACGACTTCGGATTTCGATAGCTATTTACTCAACCTGGCGTTATATTGGTT
TGGGGGGGTGTCTTTCGATTTTTCTTCCGAGTGGTATGTACTCTACCTTC
TGTTTTAGCAAGACCCTTTCGGGATTCTGTTTAGCACGTACATGTATCCA
TGTTTTTGTTTTGCTTTTCAGCGCCGGAGTGTCCCTGGTGTTTGTAACCA
CGGGTCCCCATGGATACACACGTCTTGGGGTAGAGAAAGCCAATGTGAGT
AACAATAAACGTCGATAGAAATCTAGTACTTTGGCCCTTACTATCCAAGT
TGATTTGTTGTCCTCCATGGAGGTCGTGTCTTTTGAGAGTTTTATATTAG
TGCTTGCAATATTTTTGTTCTGGTTTTCGGGGGGCTTTTCGTGTTTTCGT
CTTGCCTTCTGCATTGTGAGGAAGTTTCACGAAACTAGTGGACGGTTCAC
CAGAGAAACTACTGCTTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5265:2..570+

>mRNA_L-elsbetiae_contig5265.13390.1 ID=mRNA_L-elsbetiae_contig5265.13390.1|Name=mRNA_L-elsbetiae_contig5265.13390.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig5265:2..570+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTGGTCGGCGACAAACCGACGCGGAATCCCTTTTGCAATTTAGTAG
ACGGGTGTGGGAAGCACGACTTCGGATTTCGATAGCTATTTACTCAACCT
GGCGTTATATTGGTTTGGGGGGGTGTCTTTCGATTTTTCTTCCGAGTGGT
ATGTACTCTACCTTCTGTTTTAGCAAGACCCTTTCGGGATTCTGTTTAGC
ACGTACATGTATCCATGTTTTTGTTTTGCTTTTCAGCGCCGGAGTGTCCC
TGGTGTTTGTAACCACGGGTCCCCATGGATACACACGTCTTGGGGTAGAG
AAAGCCAATGTGAGTAACAATAAACGTCGATAGATGCCTGGTCGGCGACA
AACCGACGCGGAATCCCTTTTGCAATTTAGTAGACGGGTGTGGGAAGCAC
GACTTCGGATTTCGATAGCTATTTACTCAACCTGGCGTTATATTGGTTTG
GGGGGGTGTCTTTCGATTTTTCTTCCGAGTGGTATGTACTCTACCTTCTG
TTTTAGCAAGACCCTTTCGGGATTCTGTTTAGCACGTACATGTATCCATG
TTTTTGTTTTGCTTTTCAGCGCCGGAGTGTCCCTGGTGTTTGTAACCACG
GGTCCCCATGGATACACACGTCTTGGGGTAGAGAAAGCCAATGTGAGTAA
CAATAAACGTCGATAG
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