mRNA_L-elsbetiae_contig5264.13389.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5264.13389.1
Unique NamemRNA_L-elsbetiae_contig5264.13389.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5264.13389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5264contigL-elsbetiae_contig5264:10320..10714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size397
Cds size333
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816542.6939366-UTR-L-elsbetiae_contig5264:10319..103811622816542.6939366-UTR-L-elsbetiae_contig5264:10319..10381Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5264 10320..10381 +
1691683635.1320539-UTR-L-elsbetiae_contig5264:10319..103811691683635.1320539-UTR-L-elsbetiae_contig5264:10319..10381Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5264 10320..10381 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816542.7062228-CDS-L-elsbetiae_contig5264:10381..107141622816542.7062228-CDS-L-elsbetiae_contig5264:10381..10714Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5264 10382..10714 +
1691683635.1497588-CDS-L-elsbetiae_contig5264:10381..107141691683635.1497588-CDS-L-elsbetiae_contig5264:10381..10714Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5264 10382..10714 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5264.13389.1prot_L-elsbetiae_contig5264.13389.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5264 10382..10714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5264.13389.1

>prot_L-elsbetiae_contig5264.13389.1 ID=prot_L-elsbetiae_contig5264.13389.1|Name=mRNA_L-elsbetiae_contig5264.13389.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
MTGPASERNWDHDGPKLGAFFSVSATASRISGRGSWIFELPAYLALTLGC
TIHSRRGVGTPLQERSFLYVHTYARDLPKLKTCIDSRAIKQKRAIFRRGN
HNEHAAQADRL
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mRNA from alignment at L-elsbetiae_contig5264:10320..10714+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5264.13389.1 ID=mRNA_L-elsbetiae_contig5264.13389.1|Name=mRNA_L-elsbetiae_contig5264.13389.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=395bp|location=Sequence derived from alignment at L-elsbetiae_contig5264:10320..10714+ (Laminarionema elsbetiae ELsaHSoW15)
TACATACACTGCTGTGTGAACAACATATGTAGCTCTACGCTGTTCGCCAA
ACCAAAGGCAAGATGACCGGACCGGCTTCCGAAAGAAATTGGGACCATGA
CGGGCCAAAACTAGGGGCATTCTTCTCCGTCTCTGCGACGGCGAGCAGGA
TTTCTGGCCGTGGATCTTGGATCTTTGAACTACCAGCTTATCTGGCACTA
ACTTTGGGCTGCACCATCCACAGCCGGCGGGGCGTTGGCACACCCCTACA
AGAGCGATCCTTCCTCTACGTACATACCTACGCAAGGGATCTTCCAAAAC
TCAAAACTTGCATTGATTCTCGCGCCATCAAACAAAAAAGAGCAATATTT
AGACGGGGGAACCACAACGAACACGCTGCACAGGCAGACAGGTTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5264:10320..10714+

>mRNA_L-elsbetiae_contig5264.13389.1 ID=mRNA_L-elsbetiae_contig5264.13389.1|Name=mRNA_L-elsbetiae_contig5264.13389.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig5264:10320..10714+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACCGGACCGGCTTCCGAAAGAAATTGGGACCATGACGGGCCAAAACT
AGGGGCATTCTTCTCCGTCTCTGCGACGGCGAGCAGGATTTCTGGCCGTG
GATCTTGGATCTTTGAACTACCAGCTTATCTGGCACTAACTTTGGGCTGC
ACCATCCACAGCCGGCGGGGCGTTGGCACACCCCTACAAGAGCGATCCTT
CCTCTACGTACATACCTACGCAAGGGATCTTCCAAAACTCAAAACTTGCA
TTGATTCTCGCGCCATCAAACAAAAAAGAGCAATATTTAGACGGGGGAAC
CACAACGAACACGCTGCACAGGCAGACAGGTTGATGACCGGACCGGCTTC
CGAAAGAAATTGGGACCATGACGGGCCAAAACTAGGGGCATTCTTCTCCG
TCTCTGCGACGGCGAGCAGGATTTCTGGCCGTGGATCTTGGATCTTTGAA
CTACCAGCTTATCTGGCACTAACTTTGGGCTGCACCATCCACAGCCGGCG
GGGCGTTGGCACACCCCTACAAGAGCGATCCTTCCTCTACGTACATACCT
ACGCAAGGGATCTTCCAAAACTCAAAACTTGCATTGATTCTCGCGCCATC
AAACAAAAAAGAGCAATATTTAGACGGGGGAACCACAACGAACACGCTGC
ACAGGCAGACAGGTTG
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