mRNA_L-elsbetiae_contig526.13383.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig526.13383.1
Unique NamemRNA_L-elsbetiae_contig526.13383.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig526.13383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig526contigL-elsbetiae_contig526:2073..2532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size460
Cds size384
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816542.2015963-UTR-L-elsbetiae_contig526:2072..21481622816542.2015963-UTR-L-elsbetiae_contig526:2072..2148Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig526 2073..2148 +
1691683634.7520452-UTR-L-elsbetiae_contig526:2072..21481691683634.7520452-UTR-L-elsbetiae_contig526:2072..2148Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig526 2073..2148 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816542.2144787-CDS-L-elsbetiae_contig526:2148..25321622816542.2144787-CDS-L-elsbetiae_contig526:2148..2532Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig526 2149..2532 +
1691683634.7638807-CDS-L-elsbetiae_contig526:2148..25321691683634.7638807-CDS-L-elsbetiae_contig526:2148..2532Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig526 2149..2532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig526.13383.1prot_L-elsbetiae_contig526.13383.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig526 2149..2532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig526.13383.1

>prot_L-elsbetiae_contig526.13383.1 ID=prot_L-elsbetiae_contig526.13383.1|Name=mRNA_L-elsbetiae_contig526.13383.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
MNPGIQQHSSCASQLCKVYSSYLRGEASISLVFASLFLLPKKGWLALSEK
GSRYLKRLRCTFSFELSALFRSSTQFGTAIHEWEGSHASLVWQVLESRNP
AGYVACQLDSRATRYTAKYAAGPEKTLL
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mRNA from alignment at L-elsbetiae_contig526:2073..2532+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig526.13383.1 ID=mRNA_L-elsbetiae_contig526.13383.1|Name=mRNA_L-elsbetiae_contig526.13383.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=460bp|location=Sequence derived from alignment at L-elsbetiae_contig526:2073..2532+ (Laminarionema elsbetiae ELsaHSoW15)
AGGGGGTGTTATCTAACACAATATACCGTCCGGGGCTGTGGGTTTTCGGC
AAACAAGAGCAGAGGGCAGAGGGTGCATGAACCCAGGCATACAGCAACAT
TCGAGCTGCGCAAGTCAATTATGCAAGGTATACAGCAGTTACTTACGTGG
TGAGGCTTCCATAAGTCTGGTGTTTGCATCCCTGTTTCTCCTCCCAAAAA
AAGGCTGGCTCGCGCTCTCCGAAAAAGGCTCTCGTTACCTCAAGCGTCTG
CGCTGTACATTCTCCTTCGAATTAAGCGCCCTTTTCCGATCGAGCACACA
ATTTGGCACGGCCATCCATGAGTGGGAAGGTTCGCATGCTTCCCTGGTCT
GGCAGGTCCTCGAAAGCAGAAACCCTGCCGGTTATGTAGCTTGCCAGCTC
GACAGCCGCGCTACGCGCTACACAGCAAAATATGCGGCGGGACCTGAAAA
AACTCTTCTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig526:2073..2532+

>mRNA_L-elsbetiae_contig526.13383.1 ID=mRNA_L-elsbetiae_contig526.13383.1|Name=mRNA_L-elsbetiae_contig526.13383.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig526:2073..2532+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACCCAGGCATACAGCAACATTCGAGCTGCGCAAGTCAATTATGCAA
GGTATACAGCAGTTACTTACGTGGTGAGGCTTCCATAAGTCTGGTGTTTG
CATCCCTGTTTCTCCTCCCAAAAAAAGGCTGGCTCGCGCTCTCCGAAAAA
GGCTCTCGTTACCTCAAGCGTCTGCGCTGTACATTCTCCTTCGAATTAAG
CGCCCTTTTCCGATCGAGCACACAATTTGGCACGGCCATCCATGAGTGGG
AAGGTTCGCATGCTTCCCTGGTCTGGCAGGTCCTCGAAAGCAGAAACCCT
GCCGGTTATGTAGCTTGCCAGCTCGACAGCCGCGCTACGCGCTACACAGC
AAAATATGCGGCGGGACCTGAAAAAACTCTTCTAATGAACCCAGGCATAC
AGCAACATTCGAGCTGCGCAAGTCAATTATGCAAGGTATACAGCAGTTAC
TTACGTGGTGAGGCTTCCATAAGTCTGGTGTTTGCATCCCTGTTTCTCCT
CCCAAAAAAAGGCTGGCTCGCGCTCTCCGAAAAAGGCTCTCGTTACCTCA
AGCGTCTGCGCTGTACATTCTCCTTCGAATTAAGCGCCCTTTTCCGATCG
AGCACACAATTTGGCACGGCCATCCATGAGTGGGAAGGTTCGCATGCTTC
CCTGGTCTGGCAGGTCCTCGAAAGCAGAAACCCTGCCGGTTATGTAGCTT
GCCAGCTCGACAGCCGCGCTACGCGCTACACAGCAAAATATGCGGCGGGA
CCTGAAAAAACTCTTCTA
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