mRNA_L-elsbetiae_contig5251.13372.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5251.13372.1
Unique NamemRNA_L-elsbetiae_contig5251.13372.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5251.13372.1 vs. uniprot
Match: D7FM69_ECTSI (Ribosomal_S10 domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=D7FM69_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 1.060e-78
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1
Query:    1 MSAYVKGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADAAF 363
            MSAYVKGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADAAF
Sbjct:    1 MSAYVKGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADAAF 121          
BLAST of mRNA_L-elsbetiae_contig5251.13372.1 vs. uniprot
Match: A0A835YYK1_9STRA (Ribosomal protein S10 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYK1_9STRA)

HSP 1 Score: 195 bits (496), Expect = 1.500e-62
Identity = 98/119 (82.35%), Postives = 110/119 (92.44%), Query Frame = 1
Query:    1 MSAYVKGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADA 357
            MS++ K K +  EE+RVHRIRITLTS+NVKNLEKVCADLK GAV+ +LKVSGPVRLPT+KLKIVTRKSPCG GTNT+DRFEMRIHKRI+DLHSPSEIVK+ITSISIEPGVEVEVTI D+
Sbjct:    1 MSSFTKTKDIASEESRVHRIRITLTSRNVKNLEKVCADLKSGAVKHQLKVSGPVRLPTRKLKIVTRKSPCGNGTNTFDRFEMRIHKRIIDLHSPSEIVKQITSISIEPGVEVEVTIKDS 119          
BLAST of mRNA_L-elsbetiae_contig5251.13372.1 vs. uniprot
Match: A0A397FH44_9STRA (Ribosomal_S10 domain-containing protein n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A397FH44_9STRA)

HSP 1 Score: 194 bits (494), Expect = 5.780e-62
Identity = 97/114 (85.09%), Postives = 106/114 (92.98%), Query Frame = 1
Query:   16 KGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADA 357
            K  G   EE+R+HRIRITLTS+NVKNLEKVCADLKKGAV+K LKVSGPVRLPTK L++ TRKSPCGEGTNTWDRFEMRIHKRI+DLHSPSEIVK+ITSISIEPGVEVEVTIAD+
Sbjct:   26 KPTGFEGEESRIHRIRITLTSRNVKNLEKVCADLKKGAVDKNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHSPSEIVKQITSISIEPGVEVEVTIADS 139          
BLAST of mRNA_L-elsbetiae_contig5251.13372.1 vs. uniprot
Match: G4YYZ2_PHYSP (Ribosomal_S10 domain-containing protein n=7 Tax=Oomycota TaxID=4762 RepID=G4YYZ2_PHYSP)

HSP 1 Score: 192 bits (488), Expect = 2.490e-61
Identity = 96/120 (80.00%), Postives = 109/120 (90.83%), Query Frame = 1
Query:    1 MSAYVKGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADAA 360
            MS   K K +  EE R+HRIRITL+S+NVKNLEKVCADLK+GAV+K LKVSGPVRLPTK L++ TRKSPCGEGTNTWDRFEMRIHKRI+DLH+PS+IVK+ITSISIEPGVEVEVTIAD+A
Sbjct:    1 MSLVNKPKTVEAEETRIHRIRITLSSRNVKNLEKVCADLKRGAVDKNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIADSA 120          
BLAST of mRNA_L-elsbetiae_contig5251.13372.1 vs. uniprot
Match: H3GAS8_PHYRM (Ribosomal_S10 domain-containing protein n=9 Tax=Eukaryota TaxID=2759 RepID=H3GAS8_PHYRM)

HSP 1 Score: 192 bits (488), Expect = 2.490e-61
Identity = 96/120 (80.00%), Postives = 109/120 (90.83%), Query Frame = 1
Query:    1 MSAYVKGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADAA 360
            MS   K K +  EE R+HRIRITL+S+NVKNLEKVCADLK+GAV+K LKVSGPVRLPTK L++ TRKSPCGEGTNTWDRFEMRIHKRI+DLH+PS+IVK+ITSISIEPGVEVEVTIAD+A
Sbjct:    1 MSLVNKQKTVEAEETRIHRIRITLSSRNVKNLEKVCADLKRGAVDKNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIADSA 120          
BLAST of mRNA_L-elsbetiae_contig5251.13372.1 vs. uniprot
Match: A0A329RI77_9STRA (Ribosomal_S10 domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=A0A329RI77_9STRA)

HSP 1 Score: 194 bits (492), Expect = 2.710e-61
Identity = 97/120 (80.83%), Postives = 109/120 (90.83%), Query Frame = 1
Query:    1 MSAYVKGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADAA 360
            MS   K K +  EE R+HRIRITLTS+NVKNLEKVCADLK+GAV+K LKVSGPVRLPTK L++ TRKSPCGEGTNTWDRFEMRIHKRI+DLH+PS+IVK+ITSISIEPGVEVEVTIAD+A
Sbjct:   47 MSLVNKPKTVEAEETRIHRIRITLTSRNVKNLEKVCADLKRGAVDKNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIADSA 166          
BLAST of mRNA_L-elsbetiae_contig5251.13372.1 vs. uniprot
Match: A0A421F2P5_9STRA (Ribosomal_S10 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421F2P5_9STRA)

HSP 1 Score: 189 bits (481), Expect = 7.890e-60
Identity = 93/115 (80.87%), Postives = 107/115 (93.04%), Query Frame = 1
Query:   16 KGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADAA 360
            K K +  EE R+HRIRITL+S+NVKNLEKVCADLK+GAV+K LKV+GPVRLPTK L++ TRKSPCGEGTNTWDRFEMRIHKRI+DLH+PS+IVK+ITSISIEPGVEVEVTIAD+A
Sbjct:   37 KPKTVEAEETRIHRIRITLSSRNVKNLEKVCADLKRGAVDKNLKVAGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIADSA 151          
BLAST of mRNA_L-elsbetiae_contig5251.13372.1 vs. uniprot
Match: A0A6U5GMR1_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5GMR1_9STRA)

HSP 1 Score: 187 bits (475), Expect = 2.620e-59
Identity = 95/120 (79.17%), Postives = 108/120 (90.00%), Query Frame = 1
Query:    4 SAYVKGKGLG---QEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIAD 354
            S Y   K LG   + +A+VHRIRITLTS+NVKNLEKVCADLK+GA++KKLKVSGPVRLPTKKL I TRK+P GEGTNTWDRFEMRIHKR++DLHSP+EIVK+ITSISIEPGVEVEVT+AD
Sbjct:    3 SGYPPKKELGGIVEADAKVHRIRITLTSRNVKNLEKVCADLKRGALDKKLKVSGPVRLPTKKLTITTRKAPSGEGTNTWDRFEMRIHKRLIDLHSPAEIVKQITSISIEPGVEVEVTVAD 122          
BLAST of mRNA_L-elsbetiae_contig5251.13372.1 vs. uniprot
Match: A0A7S0I5H7_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I5H7_9EUKA)

HSP 1 Score: 186 bits (473), Expect = 6.630e-59
Identity = 95/119 (79.83%), Postives = 107/119 (89.92%), Query Frame = 1
Query:    4 SAYVKGKGLGQEEA--RVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIAD 354
            +A +K K L ++ A  +VHRIRITLTS+NVKNLEKVCADL +GA EK+LKV GPVRLPTK L+I TRKSPCGEGTNTWDRFEMRIHKR++DLHSPSEIVK+ITSISIEPGVEVEVTIAD
Sbjct:   10 AAALKSKALDEDPAAAKVHRIRITLTSRNVKNLEKVCADLIRGAKEKRLKVKGPVRLPTKTLRITTRKSPCGEGTNTWDRFEMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 128          
BLAST of mRNA_L-elsbetiae_contig5251.13372.1 vs. uniprot
Match: A0A6P8HBZ6_ACTTE (40S ribosomal protein S20 n=6 Tax=Hexacorallia TaxID=6102 RepID=A0A6P8HBZ6_ACTTE)

HSP 1 Score: 185 bits (470), Expect = 1.380e-58
Identity = 94/120 (78.33%), Postives = 108/120 (90.00%), Query Frame = 1
Query:    1 MSAYVKGKG-LGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADA 357
            MS+  K KG + +EE ++HRIRITLTS+NVK+LEKVCADL +GA EKKLKV GPVR+PTK LKI TRK+PCGEG+ TWDRFEMRIHKR++DLHSPSEIVK+ITSISIEPGVEVEVTIADA
Sbjct:    1 MSSLYKEKGAVPEEEVQIHRIRITLTSRNVKSLEKVCADLIRGAKEKKLKVKGPVRMPTKYLKITTRKTPCGEGSKTWDRFEMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 120          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5251.13372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM69_ECTSI1.060e-78100.00Ribosomal_S10 domain-containing protein n=3 Tax=Eu... [more]
A0A835YYK1_9STRA1.500e-6282.35Ribosomal protein S10 domain-containing protein n=... [more]
A0A397FH44_9STRA5.780e-6285.09Ribosomal_S10 domain-containing protein n=8 Tax=Sa... [more]
G4YYZ2_PHYSP2.490e-6180.00Ribosomal_S10 domain-containing protein n=7 Tax=Oo... [more]
H3GAS8_PHYRM2.490e-6180.00Ribosomal_S10 domain-containing protein n=9 Tax=Eu... [more]
A0A329RI77_9STRA2.710e-6180.83Ribosomal_S10 domain-containing protein n=11 Tax=P... [more]
A0A421F2P5_9STRA7.890e-6080.87Ribosomal_S10 domain-containing protein n=3 Tax=Ph... [more]
A0A6U5GMR1_9STRA2.620e-5979.17Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S0I5H7_9EUKA6.630e-5979.83Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A6P8HBZ6_ACTTE1.380e-5878.3340S ribosomal protein S20 n=6 Tax=Hexacorallia Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5251contigL-elsbetiae_contig5251:11031..11973 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score234.6
Seed ortholog evalue2.5e-59
Seed eggNOG ortholog2880.D7FM69
KEGG koko:K02969
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0051@1,KOG0900@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Ec32 ortholog descriptionRibosomal protein S10, eukaryotic/archaeal
Ec32 orthologEc-16_004860.1
Exons2
Model size366
Cds size366
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816540.9890833-CDS-L-elsbetiae_contig5251:11030..111331622816540.9890833-CDS-L-elsbetiae_contig5251:11030..11133Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5251 11031..11133 +
1691683633.8544416-CDS-L-elsbetiae_contig5251:11030..111331691683633.8544416-CDS-L-elsbetiae_contig5251:11030..11133Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5251 11031..11133 +
1622816541.0005128-CDS-L-elsbetiae_contig5251:11710..119731622816541.0005128-CDS-L-elsbetiae_contig5251:11710..11973Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5251 11711..11973 +
1691683633.879494-CDS-L-elsbetiae_contig5251:11710..119731691683633.879494-CDS-L-elsbetiae_contig5251:11710..11973Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5251 11711..11973 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5251.13372.1prot_L-elsbetiae_contig5251.13372.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5251 11031..11973 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5251.13372.1

>prot_L-elsbetiae_contig5251.13372.1 ID=prot_L-elsbetiae_contig5251.13372.1|Name=mRNA_L-elsbetiae_contig5251.13372.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
MSAYVKGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKV
SGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKE
ITSISIEPGVEVEVTIADAAF*
back to top

mRNA from alignment at L-elsbetiae_contig5251:11031..11973+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5251.13372.1 ID=mRNA_L-elsbetiae_contig5251.13372.1|Name=mRNA_L-elsbetiae_contig5251.13372.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=943bp|location=Sequence derived from alignment at L-elsbetiae_contig5251:11031..11973+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTGCTTACGTCAAGGGCAAGGGCCTCGGCCAGGAGGAGGCACGGGT GCACCGCATCCGCATCACCCTCACCTCGAAGAACGTCAAGAACCTCGAGA AGGGTAAGTACTCGACACCACCACAGATGGAAACGAGCTGCATTGCGGTG CAGTGCATACATATCAGACAACGGCAGAGGTGCGGTTCTGTGCGTACAAC CTACCCGTTTCGCAGGTGTAAAGTGGGGACATCTGTACCCTATTTAAAAA AAAAAACGTCTCGCGCTTTGGAGCCAACGTATCCCGGGCTGGGGCGCGGT GCAGAGAGGTACATGTATGTTCCCGATGCATTGCCGTAGGTCAAGCAGCA GGGGTGATGTGAAAAGGGTATTTTGCCAAGTACTTGATTTTTACGCCGCC CGCATTTGATTCAAGGATGAGACAATTGGAGTCACAAGTGTATCCCCAAC CCTCATCGTGCTTGATCGAGTTCGGAAGCCTAGACACGGCAACAGTAGCA GCGCGGTGGCTTAACCACCCGTACAACAGTAGTACTCCCTTCGCGAGGAA GAGAGCGCCAAATCGGCACCTGCCGTCGTTCAATGTCGTGTATTCAGCTT TCTGCGCCATGTAAACTCGCCTAAACCACTGCTATGTACCGCCGTAAACC ATGTGTCACTGCTGTAACTTGTGGCCGCAGTGTGCGCGGACTTGAAGAAG GGAGCGGTCGAGAAGAAGCTCAAGGTGTCCGGCCCCGTGCGCCTGCCCAC CAAGAAGCTCAAGATCGTGACCCGCAAGTCGCCCTGCGGAGAGGGAACCA ACACCTGGGACCGCTTCGAGATGCGCATCCACAAGCGCATCTTGGACCTG CACTCCCCCTCGGAGATCGTCAAGGAGATCACATCCATCTCCATCGAGCC GGGAGTCGAGGTGGAGGTCACCATTGCCGACGCCGCGTTCTAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5251:11031..11973+

>mRNA_L-elsbetiae_contig5251.13372.1 ID=mRNA_L-elsbetiae_contig5251.13372.1|Name=mRNA_L-elsbetiae_contig5251.13372.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig5251:11031..11973+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTGCTTACGTCAAGGGCAAGGGCCTCGGCCAGGAGGAGGCACGGGT
GCACCGCATCCGCATCACCCTCACCTCGAAGAACGTCAAGAACCTCGAGA
AGGATGTCTGCTTACGTCAAGGGCAAGGGCCTCGGCCAGGAGGAGGCACG
GGTGCACCGCATCCGCATCACCCTCACCTCGAAGAACGTCAAGAACCTCG
AGAAGGTGTGCGCGGACTTGAAGAAGGGAGCGGTCGAGAAGAAGCTCAAG
GTGTCCGGCCCCGTGCGCCTGCCCACCAAGAAGCTCAAGATCGTGACCCG
CAAGTCGCCCTGCGGAGAGGGAACCAACACCTGGGACCGCTTCGAGATGC
GCATCCACAAGCGCATCTTGGACCTGCACTCCCCCTCGGAGATCGTCAAG
GAGATCACATCCATCTCCATCGAGCCGGGAGTCGAGGTGGAGGTCACCAT
TGCCGACGCCGCGTTCTAGTGTGCGCGGACTTGAAGAAGGGAGCGGTCGA
GAAGAAGCTCAAGGTGTCCGGCCCCGTGCGCCTGCCCACCAAGAAGCTCA
AGATCGTGACCCGCAAGTCGCCCTGCGGAGAGGGAACCAACACCTGGGAC
CGCTTCGAGATGCGCATCCACAAGCGCATCTTGGACCTGCACTCCCCCTC
GGAGATCGTCAAGGAGATCACATCCATCTCCATCGAGCCGGGAGTCGAGG
TGGAGGTCACCATTGCCGACGCCGCGTTCTAG
back to top