mRNA_L-elsbetiae_contig5249.13367.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5249.13367.1 vs. uniprot
Match: D8LKB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKB6_ECTSI) HSP 1 Score: 1382 bits (3578), Expect = 0.000e+0 Identity = 891/1449 (61.49%), Postives = 989/1449 (68.25%), Query Frame = 1 Query: 1 QVLAFLVNGVKTRDPTTLSNVATALCRCTYEARNHESLVTEFNTAQALCYIMQRQTANLKIAGAKGMLNMCGLSSNLPALAAKLDVYMLTLCSAMEDLARNETEAV--KLNLKRPGNLAYLMSASVNLADLQSAHAQLVKQKDIVTVLCQLSSYPKLVENVSRGHPVSESSVTSWLAVEADSASPDGRLACLSAIEHLIRNQEDVDTPLLQAGLMGTLHAILDEPAAA--KAAEQAKEAALQDRAAAASSASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTA-GKKVVEPPSNPNXXXXXXXXXXXXL--LNVKKIMAISQHKKKTREHLMRSSPDILDRILAVVTKTCFSLTLRGRNRPRLVQHGLPALCGKVMKARYRLFIKFMAAACIFSLAQSAELCPDIAESGAADLALEDLDNGGRPGQAGQEESEFLLAQLAVVAQVAVEPRFCRRLASPETVDLLVVLALGTTPKNKSEY-RGAEEANGWK-GAGXXXXXXXXXXXXXXRLGNGGDHADSGGS--GCESQDIATKLAPAA------KRYSGERVNVATPYVGALRYCVVTIVERLGSILDEGGEFERTSSTLEMTSIVEKLVHLVCSVVLTSGPDEALMCRCARVVADWSSEPRFAKELGTKEAAGRSLAALMRSVSPKTKAGNYVSVALCNVAAASYCKMQPLSASDDDSAATAASATGASGKAAAKVGDGGAAPGRNAVKGTNQRQLNESSSSGSTSRISRKSDASDHH--NRDSSELSVNRTQSQSSLSGDDSPGAGGDADGGDQHWLMTTDILRDIIHGCLASASADVKSNLIKAMNNLMVSETRRAALVEGNEMSSLFELVHGYTPEVRELVARMLWNLTCERGFHSALLEADVTYTLLELLGSSTTQGAKKIPKQT------NSTPLAGXXXXXXXXXXXXXXSATTASLMGSTPSVGAIHAHDGAGSTVSGERSSIPREDGGGGESAQDGSNGTGTNTNGGGAVGGGLGTXGAVXXXXXXXXSGSHTEDXXXXXXXX-IGSSTESGISGVGLTSPEVAGTGHTPTLEVRRNVLGAVMNLTSFSISDPRLDPKAVMSLLTLIMREYPNESLNEDTAAHLWVTWQAVVLQLSFVEKYRPLIVYHGDGQVFSHLKMTNDPMSGKSSVMSMSHDRAYKRLIMGTMVNISCEPSLYEELEGQVVQVLREFLSEYEHEASGGGHSTGGILGGSRGG------------VGMLGDSGNDGSDADGRGMDEDGVAGXXXXXXXXXXXDTSSRGRDWVRHELCGKLVSNLFSSKTLRERLSKKPVAGILVGLLCGPPIRCNNGVTSSADSGSTTPASATWSSKSXXXXXXTQPGKRATSASSERRAHTNRRHPRKGSKQEGEPPLPRAPLPEGCGEPRPLLYGGGDEAAAIVSRFVCEMSILYSAEGGFELPQRTFGALVKIAHYYN 4233 +VLAFLVNGVKTRDP TLSNVATALCRCTYEARNHE LVTEFN AQALCYIMQR T NLKI GAKGMLNMCGLSS LP+LAAKLDVYMLTLCSAMEDLARNE+EAV KLNLKRPGNLAYL SASVNLADL+SAHAQLVKQKDIVTVLC LS PKLVENVSR HPVSESSVTSWLA+EADSASPDGRLACLSAIEHLIRNQE+VDTPLL+AGLMGTLHAILDEP AA KA EQA+EA + + AS S+ +A GK E PS+P + L+ KKI+A++Q KK RE L+RSSPD+LDRILAVVTKTCFS+TLRGRNRPRLVQHGLPALCGKVMK IKFMAAACIFSLAQSA+LC DIAESGAADLALEDL NGG+PGQ GQEESEFLLAQLA+VAQVAVEPRFCRR+AS + +DLL+ LALG P K+E+ R +A G G+G G G D GG G S I + + KR+SGERV VATPYVGALRYCVV IVER+G+IL+ GE+ R SS EMTS+V+KLV+LVCS VLTSGPDEALM RCARV+ADWSSE +FAKE+G KEAAG+SLA LMRSVSPKTK +YVSVALCNVAAA+ C+ Q S +D AAT A+ KAA G GG K TN S GS+++ R + ++H + + S +V+ T + ++ A GD GD+ WL T+ILRD I GCLASA+ADVKSNLIKAMNNLMVS+ RRA LV G+EM +LFELVHGYTPEVRELVARMLWNLTCE FH ALLEA VT TLLELLGSS+ AKK KQ ++ + XXXXXXXX SAT AS+ G T S GA DG VSG + ESAQ X XXXXXXXX HT D SST ++ L + E G P+LEVRRNVLGAVMNLTS SISDPRLDP AVMSLLTLIM E PNES NED A LWVTWQAVVL+LSFVEKYR LIVYHGDGQ+FSHLK+TNDP+SGKSSVMSM+HDRAYKRLIMGTMVNISCE SLYEELEGQV QVLREFLSEYEHEASGG HSTGG +G+ G + +D+D RG DEDG +G XXXXXXXXXX SRGRDWVRHELC KLVSNLFSSKTLRERLSKKP+AGILVGLLCGPP R NN ++S S S GCGEPRPLLYGGG+EAAAI SRF+CE+ ILYS EGGF+LPQRTF ALVKIAHYYN Sbjct: 192 EVLAFLVNGVKTRDPITLSNVATALCRCTYEARNHERLVTEFNAAQALCYIMQRHTTNLKIIGAKGMLNMCGLSSTLPSLAAKLDVYMLTLCSAMEDLARNESEAVQVKLNLKRPGNLAYLASASVNLADLKSAHAQLVKQKDIVTVLCLLSEQPKLVENVSRAHPVSESSVTSWLALEADSASPDGRLACLSAIEHLIRNQEEVDTPLLRAGLMGTLHAILDEPIAAAEKATEQAQEAGILE----ASEPSLLPSASGSAIAAAGSATTRGSVVTPPIASSSDSTSAIGKSGAERPSSPRSGVAVTGGGGRGVEVLDAKKIVAMTQTSKKNRERLLRSSPDVLDRILAVVTKTCFSMTLRGRNRPRLVQHGLPALCGKVMKLTKDENIKFMAAACIFSLAQSADLCSDIAESGAADLALEDLANGGQPGQNGQEESEFLLAQLAIVAQVAVEPRFCRRMASAKMIDLLMTLALGNAPDKKAEHGRPRPDAEGTNDGSGRSGGSGAPNTSGREGSGXGNTVIDGGGGKGGVRSDGIGSPRPQRSGWPMKGKRFSGERVKVATPYVGALRYCVVAIVERVGTILNADGEYGRASSPSEMTSMVKKLVYLVCSAVLTSGPDEALMARCARVMADWSSEAKFAKEMGVKEAAGKSLAVLMRSVSPKTK--SYVSVALCNVAAATQCETQLPSPRNDGGAATPELAS-TQDKAAVNEGGGGGHG-----KDTNDHGSQRQSDGGSSAQSLRSREPDNNHMVSHEGSGAAVSET-----IDNNEGSVAAGD---GDRFWLTNTNILRDTIAGCLASATADVKSNLIKAMNNLMVSKERRATLVAGDEMPALFELVHGYTPEVRELVARMLWNLTCEHDFHPALLEAGVTCTLLELLGSSSINNAKKANKQQXXXXXDSNAAASIRGVGNXXXXXXXXVSATDASVSG-TQSSGAALLDDGGVGAVSGGET----------ESAQXXXXXXXXXX-----XXXXXXXXXXXXXXXXXXXXXXHTADAVGQGATRRSSSSTGERVASARLEAVEAVSMGRKPSLEVRRNVLGAVMNLTSLSISDPRLDPSAVMSLLTLIMHEDPNESPNEDMVADLWVTWQAVVLRLSFVEKYRALIVYHGDGQIFSHLKLTNDPLSGKSSVMSMAHDRAYKRLIMGTMVNISCETSLYEELEGQV-QVLREFLSEYEHEASGGAHSTGGTXXXXXXXXXXXXXXXXXXXMGLADSDGLESADSDERGFDEDG-SGMXXXXXXXXXXXXXSRGRDWVRHELCAKLVSNLFSSKTLRERLSKKPIAGILVGLLCGPPTRWNNRTSNSGGSTS------------------------------------------------------------GCGEPRPLLYGGGEEAAAITSRFLCELCILYSTEGGFDLPQRTFDALVKIAHYYN 1542
BLAST of mRNA_L-elsbetiae_contig5249.13367.1 vs. uniprot
Match: A0A6H5JX20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX20_9PHAE) HSP 1 Score: 499 bits (1284), Expect = 1.230e-148 Identity = 360/692 (52.02%), Postives = 393/692 (56.79%), Query Frame = 1 Query: 2278 DSPGAGGDADGGDQHWLMTTDILRDIIHGCLASASADVKSNLIKAMNNLMVSETRRAALVEGNEMSSLFELVHGYTPEVRELVARMLWNLTCERGFHSALLEADVTYTLLELLGSSTTQGAKKIPKQT-----NSTPLAGXXXXXXXXXXXXXXSATTASLMGSTPSVGAIHAHDGAGSTVSGERSSIPREDGGGGESAQDGSNG-TGTNTNGGGAVGGGLGTXGAVXXXXXXXXSGSHTEDXXXXXXXXIGSS-TESGISGVGLTSPEVAGTGHTPTLEVRRNVLGAVMNLTSFSISDPRLDPKAVMSLLTLIMREYPNESLNEDTAAHLWVTWQAVVLQLSFVEKYRPLIVYHGDGQVFSHLKMTNDPMSGKSSVMSMSHDRAYKRLIMGTMVNISCEPSLYEELEGQVVQVLREFLSEYEHEASGGGHSTGGILGGSRG------------GVGMLGDSGNDGSDADGRGMDEDGVAGXXXXXXXXXXXDTSSRGRDWVRHELCGKLVSNLFSSKTLRERLSKKPVAGILVGLLCGPPIRCNNGVTSSADSGSTTPASATWSSKSXXXXXXTQPGKRATSASSERRAHTNRRHPRKG---------------------SKQEGEPPLPRAPLPEGCGEPRPLLYGGGDEAAAIVSRFVCEMSILYSAEGGFELPQRTFGALVKIAHYYN 4233 DS G A GD+ WL T+ILRD I GCLASA+ADVKSNLIKAMNNLMVSE RRA LV G+E+ +LFELVHGYTPEVRELVARMLWNLTCE FHSALLEA VT TLLELLGSS +S A SAT AS+ G+ GA DG VSG + ESAQDGS+G G T+G G VG G XXXX HT D SS T ++ + E G P+LEVRRNVLGAVMNLTS SISDPRLDP AVMSLLT IM E PNE G+ +TNDP+SGKSSVMSM+HDRAYKRLIMGTMVNISCE SLYEELEGQV QVLREFLSEYEHEASGG HSTGG LGG G+G+ G + +D+D RG+DEDG GRDWVRHELC KLVSNLFSSKTLRERLSKKP+AGILVGLLCGPP R NN ++ XXXXXX SK EGEPP P PLPEGCGEPRPLLYGGG+EAAAI SRF+CE+ ILYS EGGF+LPQRTF ALVKIAHYYN Sbjct: 16 DSNGGSEAAGDGDRFWLTNTNILRDTIAGCLASATADVKSNLIKAMNNLMVSEERRAKLVAGDELPALFELVHGYTPEVRELVARMLWNLTCEHDFHSALLEAGVTCTLLELLGSSXXXXXXXXXXXXXXXXXDSNAAASIRGVGNGSGGA---SATDASVSGTQS--GAALLDDGGVRPVSGGET----------ESAQDGSSGDVGPATSGAGGVGSG------PEASTXXXXXXXHTADAVGEGSTRRSSSGTGERVASARSEAVEAVSIGRKPSLEVRRNVLGAVMNLTSLSISDPRLDPSAVMSLLTFIMHEDPNE---------------------------------RGE--------LTNDPLSGKSSVMSMAHDRAYKRLIMGTMVNISCETSLYEELEGQV-QVLREFLSEYEHEASGGAHSTGGTLGGXXXXXXXXXXXXXXXGLGLADSDGLESADSDERGLDEDGG------------------GRDWVRHELCAKLVSNLFSSKTLRERLSKKPIAGILVGLLCGPPTRWNNRTSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKCEGEPPXPNPPLPEGCGEPRPLLYGGGEEAAAITSRFLCELCILYSTEGGFDLPQRTFDALVKIAHYYN 626 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5249.13367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5249.13367.1 >prot_L-elsbetiae_contig5249.13367.1 ID=prot_L-elsbetiae_contig5249.13367.1|Name=mRNA_L-elsbetiae_contig5249.13367.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1453bp QVLAFLVNGVKTRDPTTLSNVATALCRCTYEARNHESLVTEFNTAQALCYback to top mRNA from alignment at L-elsbetiae_contig5249:108..12892+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5249.13367.1 ID=mRNA_L-elsbetiae_contig5249.13367.1|Name=mRNA_L-elsbetiae_contig5249.13367.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=12785bp|location=Sequence derived from alignment at L-elsbetiae_contig5249:108..12892+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5249:108..12892+ >mRNA_L-elsbetiae_contig5249.13367.1 ID=mRNA_L-elsbetiae_contig5249.13367.1|Name=mRNA_L-elsbetiae_contig5249.13367.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=8718bp|location=Sequence derived from alignment at L-elsbetiae_contig5249:108..12892+ (Laminarionema elsbetiae ELsaHSoW15)back to top |