mRNA_L-elsbetiae_contig524.13355.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig524.13355.1
Unique NamemRNA_L-elsbetiae_contig524.13355.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig524.13355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig524contigL-elsbetiae_contig524:25167..26641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size314
Cds size252
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig524.13355.1prot_L-elsbetiae_contig524.13355.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig524 25228..26641 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816538.4981527-UTR-L-elsbetiae_contig524:25166..252271622816538.4981527-UTR-L-elsbetiae_contig524:25166..25227Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig524 25167..25227 -
1691683632.0147443-UTR-L-elsbetiae_contig524:25166..252271691683632.0147443-UTR-L-elsbetiae_contig524:25166..25227Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig524 25167..25227 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816538.5104597-CDS-L-elsbetiae_contig524:25227..252481622816538.5104597-CDS-L-elsbetiae_contig524:25227..25248Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig524 25228..25248 -
1691683632.0261493-CDS-L-elsbetiae_contig524:25227..252481691683632.0261493-CDS-L-elsbetiae_contig524:25227..25248Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig524 25228..25248 -
1622816538.5216286-CDS-L-elsbetiae_contig524:26410..266411622816538.5216286-CDS-L-elsbetiae_contig524:26410..26641Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig524 26411..26641 -
1691683632.0369773-CDS-L-elsbetiae_contig524:26410..266411691683632.0369773-CDS-L-elsbetiae_contig524:26410..26641Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig524 26411..26641 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig524.13355.1

>prot_L-elsbetiae_contig524.13355.1 ID=prot_L-elsbetiae_contig524.13355.1|Name=mRNA_L-elsbetiae_contig524.13355.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
CYFPLPHPLPPRLRCISARPHASDRAAVRAVLPRAATLFRLRSATPYVRH
LSPLRSDAAGTCYRLGAGEREAGGRRKCLGPFV*
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mRNA from alignment at L-elsbetiae_contig524:25167..26641-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig524.13355.1 ID=mRNA_L-elsbetiae_contig524.13355.1|Name=mRNA_L-elsbetiae_contig524.13355.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1475bp|location=Sequence derived from alignment at L-elsbetiae_contig524:25167..26641- (Laminarionema elsbetiae ELsaHSoW15)
TGCTATTTCCCCCTCCCCCACCCCCTTCCTCCCCGACTACGATGTATTTC
GGCCAGGCCGCACGCTTCTGACCGCGCCGCTGTCCGTGCCGTTCTCCCGC
GAGCTGCCACTCTTTTCCGATTGAGAAGCGCCACGCCGTATGTCCGCCAC
TTGAGCCCCCTCAGAAGTGATGCAGCGGGCACGTGTTACCGGCTCGGGGC
GGGGGAGCGCGAGGCGGGCGGGCGGAGGAAGGTGGGAGCCGGTGGTCTCG
GAAATGCCTCTTGCTGTGTACCATACAGCGCATCTAATCTACGTTTTTTT
GCCAGGGGGAGGGGGGGGGTTGCAAGTGTGTACGAGGCTCTTGTTGTTCA
TTGTGTCGACTTTTCTGTTCTCATGCCCCCCCCCCGTGAGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGTTGTTGTTGTTGTTGTTGTTGGCTTGACAT
GAAAAACCGTTCCGATCTCTCTTATCCAGTACCTCCATGAGCCCGTACTA
ATCCGACACTGACGCGGTCGATTCCCTTGGCAGCAGCATAATTTACCTTC
TAAAAAAGGTACACTTAGAAAATGAAAAAAAAAAATGGCTGTGAAGGGTG
TGCGTATTTCAATTCGAAAAGGCAGAGGTCGGATAGCAAAAAAAAAACGC
CCGGAACGCATAACGCTGTACGACTATTGTACTGTTTATTACTCTTCCGA
TCGTTTCTTATTGTTTTTTGGGAGACAGATCCAATCCACCCGTTGTCGCC
TTCAATCCCGCTCGCCGTTACGTGAGGTGACTGGCTACTTTACCCCGTCA
TCCGCAGTGACTACGCCCTGCCTCCTCCCTCTGTCCGGCCCAGGAAGCTT
TTTATCCCCTTCTCCCCGCTAAAAGCCCAACTCTATGCACAACGCGCGCG
CGCCCCCCTCGCCCTCGTTTTTTTTTGTTGTTGTTGTCGTGTGTGTTTGT
TTCTGTGATGGTATGTGTCGCGTGGGACGGCGGGACACCGGTTAAAACGG
TTCTTTCCCTCCCGTCCGGTGTTTTCATCATTTCTCTCTGCCCCTGCGCC
CATTCTGCCGACCACGTGACCGTGTCCGTGTGTGTGTGTGTGGGGGGTAT
TAATTATTCCCGTGGTTGGTCTTTGATTTTCCGCCGTCTCGTCTTGTATA
TCAACGGTTGTTTTGGTGATGTCACCTACGTACGTACGCTCGTGGGTGGG
TGGACGTGGCGGCGGTTGCCGGATGTTGACGTCGCCCTCTCGATTTATCC
ATGTTGCGGGGGAATATCGGTGATTTTTTTTGTTGTCGGTGGATGTTGGT
TGGCTATGTATGTGTTTCCGTACCGATTTGCGTACTTTTTGTTGTTGTCC
TGTCGTGCGGTTGCTCCGCACCTGTGTGTACATTCTTCGGTAGTGTCTTG
GACCTTTCGTTTGATTCGTCCTGATGGTGGGGTGACTTGCGTTTATTTCT
CGTGCGGGGGGCCCCGGCCGTCTTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig524:25167..26641-

>mRNA_L-elsbetiae_contig524.13355.1 ID=mRNA_L-elsbetiae_contig524.13355.1|Name=mRNA_L-elsbetiae_contig524.13355.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig524:25167..26641- (Laminarionema elsbetiae ELsaHSoW15)
TGCTATTTCCCCCTCCCCCACCCCCTTCCTCCCCGACTACGATGTATTTC
GGCCAGGCCGCACGCTTCTGACCGCGCCGCTGTCCGTGCCGTTCTCCCGC
GAGCTGCCACTCTTTTCCGATTGAGAAGCGCCACGCCGTATGTCCGCCAC
TTGAGCCCCCTCAGAAGTGATGCAGCGGGCACGTGTTACCGGCTCGGGGC
GGGGGAGCGCGAGGCGGGCGGGCGGAGGAAGTGCTATTTCCCCCTCCCCC
ACCCCCTTCCTCCCCGACTACGATGTATTTCGGCCAGGCCGCACGCTTCT
GACCGCGCCGCTGTCCGTGCCGTTCTCCCGCGAGCTGCCACTCTTTTCCG
ATTGAGAAGCGCCACGCCGTATGTCCGCCACTTGAGCCCCCTCAGAAGTG
ATGCAGCGGGCACGTGTTACCGGCTCGGGGCGGGGGAGCGCGAGGCGGGC
GGGCGGAGGAAGTGTCTTGGACCTTTCGTTTGATGTCTTGGACCTTTCGT
TTGA
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