mRNA_L-elsbetiae_contig524.13354.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig524.13354.1
Unique NamemRNA_L-elsbetiae_contig524.13354.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig524.13354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig524contigL-elsbetiae_contig524:25167..25944 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size778
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig524.13354.1prot_L-elsbetiae_contig524.13354.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig524 25259..25759 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816538.7313073-UTR-L-elsbetiae_contig524:25166..252581622816538.7313073-UTR-L-elsbetiae_contig524:25166..25258Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig524 25167..25258 +
1691683632.1455965-UTR-L-elsbetiae_contig524:25166..252581691683632.1455965-UTR-L-elsbetiae_contig524:25166..25258Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig524 25167..25258 +
1622816538.754177-UTR-L-elsbetiae_contig524:25759..259441622816538.754177-UTR-L-elsbetiae_contig524:25759..25944Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig524 25760..25944 +
1691683632.1648054-UTR-L-elsbetiae_contig524:25759..259441691683632.1648054-UTR-L-elsbetiae_contig524:25759..25944Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig524 25760..25944 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816538.7431555-CDS-L-elsbetiae_contig524:25258..257591622816538.7431555-CDS-L-elsbetiae_contig524:25258..25759Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig524 25259..25759 +
1691683632.1554592-CDS-L-elsbetiae_contig524:25258..257591691683632.1554592-CDS-L-elsbetiae_contig524:25258..25759Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig524 25259..25759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig524.13354.1

>prot_L-elsbetiae_contig524.13354.1 ID=prot_L-elsbetiae_contig524.13354.1|Name=mRNA_L-elsbetiae_contig524.13354.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=167bp
MYTQVRSNRTTGQQQKVRKSVRKHIHSQPTSTDNKKNHRYSPATWINREG
DVNIRQPPPRPPTHERTYVGDITKTTVDIQDETAENQRPTTGIINTPHTH
THGHGHVVGRMGAGAERNDENTGREGKNRFNRCPAVPRDTYHHRNKHTRQ
QQQKKTRARGARARCA*
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mRNA from alignment at L-elsbetiae_contig524:25167..25944+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig524.13354.1 ID=mRNA_L-elsbetiae_contig524.13354.1|Name=mRNA_L-elsbetiae_contig524.13354.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=778bp|location=Sequence derived from alignment at L-elsbetiae_contig524:25167..25944+ (Laminarionema elsbetiae ELsaHSoW15)
CAAGACGGCCGGGGCCCCCCGCACGAGAAATAAACGCAAGTCACCCCACC
ATCAGGACGAATCAAACGAAAGGTCCAAGACACTACCGAAGAATGTACAC
ACAGGTGCGGAGCAACCGCACGACAGGACAACAACAAAAAGTACGCAAAT
CGGTACGGAAACACATACATAGCCAACCAACATCCACCGACAACAAAAAA
AATCACCGATATTCCCCCGCAACATGGATAAATCGAGAGGGCGACGTCAA
CATCCGGCAACCGCCGCCACGTCCACCCACCCACGAGCGTACGTACGTAG
GTGACATCACCAAAACAACCGTTGATATACAAGACGAGACGGCGGAAAAT
CAAAGACCAACCACGGGAATAATTAATACCCCCCACACACACACACACGG
ACACGGTCACGTGGTCGGCAGAATGGGCGCAGGGGCAGAGAGAAATGATG
AAAACACCGGACGGGAGGGAAAGAACCGTTTTAACCGGTGTCCCGCCGTC
CCACGCGACACATACCATCACAGAAACAAACACACACGACAACAACAACA
AAAAAAAACGAGGGCGAGGGGGGCGCGCGCGCGTTGTGCATAGAGTTGGG
CTTTTAGCGGGGAGAAGGGGATAAAAAGCTTCCTGGGCCGGACAGAGGGA
GGAGGCAGGGCGTAGTCACTGCGGATGACGGGGTAAAGTAGCCAGTCACC
TCACGTAACGGCGAGCGGGATTGAAGGCGACAACGGGTGGATTGGATCTG
TCTCCCAAAAAACAATAAGAAACGATCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig524:25167..25944+

>mRNA_L-elsbetiae_contig524.13354.1 ID=mRNA_L-elsbetiae_contig524.13354.1|Name=mRNA_L-elsbetiae_contig524.13354.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1002bp|location=Sequence derived from alignment at L-elsbetiae_contig524:25167..25944+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACACACAGGTGCGGAGCAACCGCACGACAGGACAACAACAAAAAGT
ACGCAAATCGGTACGGAAACACATACATAGCCAACCAACATCCACCGACA
ACAAAAAAAATCACCGATATTCCCCCGCAACATGGATAAATCGAGAGGGC
GACGTCAACATCCGGCAACCGCCGCCACGTCCACCCACCCACGAGCGTAC
GTACGTAGGTGACATCACCAAAACAACCGTTGATATACAAGACGAGACGG
CGGAAAATCAAAGACCAACCACGGGAATAATTAATACCCCCCACACACAC
ACACACGGACACGGTCACGTGGTCGGCAGAATGGGCGCAGGGGCAGAGAG
AAATGATGAAAACACCGGACGGGAGGGAAAGAACCGTTTTAACCGGTGTC
CCGCCGTCCCACGCGACACATACCATCACAGAAACAAACACACACGACAA
CAACAACAAAAAAAAACGAGGGCGAGGGGGGCGCGCGCGCGTTGTGCATA
GATGTACACACAGGTGCGGAGCAACCGCACGACAGGACAACAACAAAAAG
TACGCAAATCGGTACGGAAACACATACATAGCCAACCAACATCCACCGAC
AACAAAAAAAATCACCGATATTCCCCCGCAACATGGATAAATCGAGAGGG
CGACGTCAACATCCGGCAACCGCCGCCACGTCCACCCACCCACGAGCGTA
CGTACGTAGGTGACATCACCAAAACAACCGTTGATATACAAGACGAGACG
GCGGAAAATCAAAGACCAACCACGGGAATAATTAATACCCCCCACACACA
CACACACGGACACGGTCACGTGGTCGGCAGAATGGGCGCAGGGGCAGAGA
GAAATGATGAAAACACCGGACGGGAGGGAAAGAACCGTTTTAACCGGTGT
CCCGCCGTCCCACGCGACACATACCATCACAGAAACAAACACACACGACA
ACAACAACAAAAAAAAACGAGGGCGAGGGGGGCGCGCGCGCGTTGTGCAT
AG
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