mRNA_L-elsbetiae_contig524.13351.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig524.13351.1
Unique NamemRNA_L-elsbetiae_contig524.13351.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig524.13351.1 vs. uniprot
Match: A0A6H5JGU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU1_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.170e-21
Identity = 123/282 (43.62%), Postives = 142/282 (50.35%), Query Frame = -2 
Query:    4 MPSPSFSHEPIGTRVMSVRDRARNWQAGDT--VSTESQSELPP-------PPTIEEIEEMERA----AAEEKTVNDDNVCHTPSGSSLSAPINKQQQQ-YSRQVSRVSGMGRTVRAAAPRPIDSSFPRSMAAAAXXXXXXXXXXXXXXXXXAREAAPGRERRGRSPPS--RQRDFSS--------RRSISVDDPNRRPRQQRSRG-QHPAVAPTNGAPLPRRKNA--------GGKQQTVSFRVEHEEPNNSASTRKPVVAKGGRGRGGRTRGAPYTAHGTP 750
            MP P  S         SVR+RAR WQ       S  S S  PP       PPTIEEIE ME+A     A     + +  C TP GSSL    NKQ  + YSRQVSRVSG GRT RA+ PR                  XXXXXXXXXXXXX      G +RRGRSPP    Q++ S         RRS+SVDDP+ RP Q+  RG QHP    + GAP  R   A        GG+Q   S RV+  + N + +T +P    GGRG GGR     YTAHGTP
Sbjct:    1 MPPPPSSTPAPYPGTSSVRERARAWQESSARDASPPSGSVSPPVMKEKEVPPTIEEIEAMEKADWVEVAAAAAADQEEPCRTPGGSSLPQLDNKQTPRTYSRQVSRVSGTGRTARASTPR----------------TAXXXXXXXXXXXXXXXXXTSGTQRRGRSPPKPHHQQEISRSQSQRRLHRRSVSVDDPDHRPTQRLPRGHQHPRTTRSRGAPAGRAPAASNXXXXXSGGRQPQNSRRVQQLD-NPARTTSRPSQINGGRG-GGRVL---YTAHGTP 261
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig524.13351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JGU1_9PHAE1.170e-2143.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig524contigL-elsbetiae_contig524:6192..7095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size904
Cds size459
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig524.13351.1prot_L-elsbetiae_contig524.13351.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig524 6204..6662 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816538.6732383-UTR-L-elsbetiae_contig524:6191..62031622816538.6732383-UTR-L-elsbetiae_contig524:6191..6203Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig524 6192..6203 +
1691683632.1098123-UTR-L-elsbetiae_contig524:6191..62031691683632.1098123-UTR-L-elsbetiae_contig524:6191..6203Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig524 6192..6203 +
1622816538.6961284-UTR-L-elsbetiae_contig524:6662..70951622816538.6961284-UTR-L-elsbetiae_contig524:6662..7095Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig524 6663..7095 +
1691683632.1331117-UTR-L-elsbetiae_contig524:6662..70951691683632.1331117-UTR-L-elsbetiae_contig524:6662..7095Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig524 6663..7095 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816538.6853476-CDS-L-elsbetiae_contig524:6203..66621622816538.6853476-CDS-L-elsbetiae_contig524:6203..6662Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig524 6204..6662 +
1691683632.1209369-CDS-L-elsbetiae_contig524:6203..66621691683632.1209369-CDS-L-elsbetiae_contig524:6203..6662Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig524 6204..6662 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig524.13351.1

>prot_L-elsbetiae_contig524.13351.1 ID=prot_L-elsbetiae_contig524.13351.1|Name=mRNA_L-elsbetiae_contig524.13351.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
MRGVRCAARATSSSSSSFRDDGFSGGCRVVGFLMFNTEGHSLLLTARVFP
PGKRSAIGGGHRRVLSARSLLPRAAVRVVDRDGAAAAEVALTRWGRASPS
LPARSSLSGDGGSRGGLLCGRGGLLCSGCSHRPGEAAVDRPGSGSAHRPP
HA*
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mRNA from alignment at L-elsbetiae_contig524:6192..7095+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig524.13351.1 ID=mRNA_L-elsbetiae_contig524.13351.1|Name=mRNA_L-elsbetiae_contig524.13351.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=904bp|location=Sequence derived from alignment at L-elsbetiae_contig524:6192..7095+ (Laminarionema elsbetiae ELsaHSoW15)
CGACGGGGTCCCATGCGCGGTGTACGGTGCGCCGCGCGTGCGACCTCCTC
GTCCTCGTCCTCCTTTCGCGACGACGGGTTTTCGGGTGGATGCCGAGTTG
TTGGGTTCCTCATGTTCAACACGGAAGGACACAGTCTGCTGCTTACCGCC
CGCGTTTTTCCTCCTGGGAAGCGGAGCGCCATTGGTGGGGGCCACCGCCG
GGTGCTGTCCGCGCGATCGCTGCTGCCGCGGGCGGCGGTTCGGGTCGTCG
ACCGAGATGGAGCGGCGGCTGCTGAAGTCGCGCTGACGCGATGGGGGAGA
GCGTCCCCTTCGCTCCCGGCCAGGAGCAGCCTCTCTGGCGACGGCGGCAG
CCGCGGCGGCCTTCTCTGCGGCCGCGGCGGCCTCCTCTGCAGCGGCTGCA
GCCATCGACCTGGGGAAGCTGCTGTCGATCGGCCTGGGAGCGGCAGCGCG
CACCGTCCTCCCCATGCCTGACACGCGGCTGACCTGCCGGCTGTACTGCT
GTTGCTGCTTGTTGATGGGAGCCGACAAGCTTGAGCCGCTCGGAGTGTGG
CACACGTTGTCGTCGTTCACGGTCTTCTCCTCGGCTGCCGCCCTCTCCAT
CTCCTCGATCTCTTCGATGGTGGGCGGTGGTGGCAGCTCGCTTTGGCTCT
CCGTCGACACGGTGTCACCGGCTTGCCAATTTCGTGCTCGATCCCTGACG
CTCATCACCCGGGTGCCGATGGGTTCGTGTGAGAAACTAGGAGACGGCAT
CGGTTTGATCGCGATGAGATCCCCACGGCTGTCTTATCTGCCTGTCGTCC
GGTGCCTCTCGGTAGCAGCAGCAGGGTGGTCGCGATGAAGAGAGTTGAGA
GGGGTGCTGGTGTGCTGGGTATCCGGAATGCTCTCACTTGTTTTTTTGTT
CCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig524:6192..7095+

>mRNA_L-elsbetiae_contig524.13351.1 ID=mRNA_L-elsbetiae_contig524.13351.1|Name=mRNA_L-elsbetiae_contig524.13351.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig524:6192..7095+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCGGTGTACGGTGCGCCGCGCGTGCGACCTCCTCGTCCTCGTCCTC
CTTTCGCGACGACGGGTTTTCGGGTGGATGCCGAGTTGTTGGGTTCCTCA
TGTTCAACACGGAAGGACACAGTCTGCTGCTTACCGCCCGCGTTTTTCCT
CCTGGGAAGCGGAGCGCCATTGGTGGGGGCCACCGCCGGGTGCTGTCCGC
GCGATCGCTGCTGCCGCGGGCGGCGGTTCGGGTCGTCGACCGAGATGGAG
CGGCGGCTGCTGAAGTCGCGCTGACGCGATGGGGGAGAGCGTCCCCTTCG
CTCCCGGCCAGGAGCAGCCTCTCTGGCGACGGCGGCAGCCGCGGCGGCCT
TCTCTGCGGCCGCGGCGGCCTCCTCTGCAGCGGCTGCAGCCATCGACCTG
GGGAAGCTGCTGTCGATCGGCCTGGGAGCGGCAGCGCGCACCGTCCTCCC
CATGCCTGAATGCGCGGTGTACGGTGCGCCGCGCGTGCGACCTCCTCGTC
CTCGTCCTCCTTTCGCGACGACGGGTTTTCGGGTGGATGCCGAGTTGTTG
GGTTCCTCATGTTCAACACGGAAGGACACAGTCTGCTGCTTACCGCCCGC
GTTTTTCCTCCTGGGAAGCGGAGCGCCATTGGTGGGGGCCACCGCCGGGT
GCTGTCCGCGCGATCGCTGCTGCCGCGGGCGGCGGTTCGGGTCGTCGACC
GAGATGGAGCGGCGGCTGCTGAAGTCGCGCTGACGCGATGGGGGAGAGCG
TCCCCTTCGCTCCCGGCCAGGAGCAGCCTCTCTGGCGACGGCGGCAGCCG
CGGCGGCCTTCTCTGCGGCCGCGGCGGCCTCCTCTGCAGCGGCTGCAGCC
ATCGACCTGGGGAAGCTGCTGTCGATCGGCCTGGGAGCGGCAGCGCGCAC
CGTCCTCCCCATGCCTGA
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