mRNA_L-elsbetiae_contig5238.13349.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5238.13349.1
Unique NamemRNA_L-elsbetiae_contig5238.13349.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5238.13349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5238contigL-elsbetiae_contig5238:10713..11197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size485
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5238.13349.1prot_L-elsbetiae_contig5238.13349.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5238 10780..11118 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816538.31943-UTR-L-elsbetiae_contig5238:10712..107791622816538.31943-UTR-L-elsbetiae_contig5238:10712..10779Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5238 10713..10779 +
1691683631.9161444-UTR-L-elsbetiae_contig5238:10712..107791691683631.9161444-UTR-L-elsbetiae_contig5238:10712..10779Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5238 10713..10779 +
1622816538.3522174-UTR-L-elsbetiae_contig5238:11118..111971622816538.3522174-UTR-L-elsbetiae_contig5238:11118..11197Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5238 11119..11197 +
1691683631.9380708-UTR-L-elsbetiae_contig5238:11118..111971691683631.9380708-UTR-L-elsbetiae_contig5238:11118..11197Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5238 11119..11197 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816538.3362951-CDS-L-elsbetiae_contig5238:10779..111181622816538.3362951-CDS-L-elsbetiae_contig5238:10779..11118Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5238 10780..11118 +
1691683631.9279678-CDS-L-elsbetiae_contig5238:10779..111181691683631.9279678-CDS-L-elsbetiae_contig5238:10779..11118Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5238 10780..11118 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5238.13349.1

>prot_L-elsbetiae_contig5238.13349.1 ID=prot_L-elsbetiae_contig5238.13349.1|Name=mRNA_L-elsbetiae_contig5238.13349.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
MKRGGGHSRRDGTDRAHIGWLVGGPTGGLYFCSSCLLSEDEYILLYDWLD
ISIVSTSSPFQTSVMTGTFQGVEQENSSSVGCCSSCANTMGCRRVTLKSQ
NNWRTPPRASPA*
back to top

mRNA from alignment at L-elsbetiae_contig5238:10713..11197+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5238.13349.1 ID=mRNA_L-elsbetiae_contig5238.13349.1|Name=mRNA_L-elsbetiae_contig5238.13349.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=485bp|location=Sequence derived from alignment at L-elsbetiae_contig5238:10713..11197+ (Laminarionema elsbetiae ELsaHSoW15)
CTTCCCGTGTGTTCAGACAACAGCGAAATGAAGATACACTTATCATTTTG
CCTTGGGATCGCTTCCAATGAAGCGGGGGGGGGGGCATAGTCGACGCGAT
GGAACCGACCGAGCCCATATAGGGTGGCTGGTTGGCGGTCCAACGGGCGG
GCTATATTTTTGCTCTTCGTGTTTGCTCTCCGAAGATGAATATATACTTC
TATATGACTGGCTGGATATCAGTATCGTGAGTACAAGTTCCCCCTTTCAG
ACGTCGGTCATGACCGGAACATTTCAGGGGGTGGAGCAAGAGAACAGCAG
TAGTGTTGGCTGCTGTTCGAGTTGCGCAAACACTATGGGTTGCCGCCGTG
TCACACTAAAGAGCCAGAACAACTGGCGTACGCCGCCACGTGCGTCGCCA
GCCTGACTGAGAAGTCTCCTGAAAAGCCTGGTTCCAGTGCGCGTGGCTTG
CTTGACCAACAATCCACCGGGGAAAACTCAATCTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5238:10713..11197+

>mRNA_L-elsbetiae_contig5238.13349.1 ID=mRNA_L-elsbetiae_contig5238.13349.1|Name=mRNA_L-elsbetiae_contig5238.13349.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig5238:10713..11197+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGCGGGGGGGGGGGCATAGTCGACGCGATGGAACCGACCGAGCCCA
TATAGGGTGGCTGGTTGGCGGTCCAACGGGCGGGCTATATTTTTGCTCTT
CGTGTTTGCTCTCCGAAGATGAATATATACTTCTATATGACTGGCTGGAT
ATCAGTATCGTGAGTACAAGTTCCCCCTTTCAGACGTCGGTCATGACCGG
AACATTTCAGGGGGTGGAGCAAGAGAACAGCAGTAGTGTTGGCTGCTGTT
CGAGTTGCGCAAACACTATGGGTTGCCGCCGTGTCACACTAAAGAGCCAG
AACAACTGGCGTACGCCGCCACGTGCGTCGCCAGCCTGAATGAAGCGGGG
GGGGGGGCATAGTCGACGCGATGGAACCGACCGAGCCCATATAGGGTGGC
TGGTTGGCGGTCCAACGGGCGGGCTATATTTTTGCTCTTCGTGTTTGCTC
TCCGAAGATGAATATATACTTCTATATGACTGGCTGGATATCAGTATCGT
GAGTACAAGTTCCCCCTTTCAGACGTCGGTCATGACCGGAACATTTCAGG
GGGTGGAGCAAGAGAACAGCAGTAGTGTTGGCTGCTGTTCGAGTTGCGCA
AACACTATGGGTTGCCGCCGTGTCACACTAAAGAGCCAGAACAACTGGCG
TACGCCGCCACGTGCGTCGCCAGCCTGA
back to top