mRNA_L-elsbetiae_contig523.13340.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig523.13340.1
Unique NamemRNA_L-elsbetiae_contig523.13340.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig523.13340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig523contigL-elsbetiae_contig523:22295..23562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size468
Cds size468
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816537.437568-CDS-L-elsbetiae_contig523:22294..225041622816537.437568-CDS-L-elsbetiae_contig523:22294..22504Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig523 22295..22504 -
1691683631.3139074-CDS-L-elsbetiae_contig523:22294..225041691683631.3139074-CDS-L-elsbetiae_contig523:22294..22504Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig523 22295..22504 -
1622816537.448555-CDS-L-elsbetiae_contig523:23304..235621622816537.448555-CDS-L-elsbetiae_contig523:23304..23562Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig523 23305..23562 -
1691683631.3250232-CDS-L-elsbetiae_contig523:23304..235621691683631.3250232-CDS-L-elsbetiae_contig523:23304..23562Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig523 23305..23562 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig523.13340.1prot_L-elsbetiae_contig523.13340.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig523 22295..23562 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig523.13340.1

>prot_L-elsbetiae_contig523.13340.1 ID=prot_L-elsbetiae_contig523.13340.1|Name=mRNA_L-elsbetiae_contig523.13340.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=156bp
SATCSPCPAGHSCSSAAAAPVACLAGEFASAGALSCSVCADGNYNMLEAQ
QFCQACPVGHECPDKTSEPTRCSSGSYSSGNATACEVPTECPAGTASPGG
ATNCTTCADGTYSDTIGSTVCTSCPAGKSCEDKSADPEPCTNGTFSQIGD
TSCSVC
back to top

mRNA from alignment at L-elsbetiae_contig523:22295..23562-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig523.13340.1 ID=mRNA_L-elsbetiae_contig523.13340.1|Name=mRNA_L-elsbetiae_contig523.13340.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1268bp|location=Sequence derived from alignment at L-elsbetiae_contig523:22295..23562- (Laminarionema elsbetiae ELsaHSoW15)
TCCGCCACTTGTTCCCCCTGCCCGGCCGGGCACTCGTGCAGCTCGGCGGC GGCGGCACCCGTGGCGTGCCTGGCGGGAGAGTTTGCCAGCGCCGGTGCTC TGAGCTGCTCAGTCTGCGCGGACGGCAACTACAACATGCTCGAGGCGCAG CAGTTCTGCCAGGCCTGCCCGGTCGGCCACGAGTGCCCCGACAAGACTTC GGAGCCGACTCGGTGCTCCTCGGGGTCGTACAGCTCCGGGAACGCCACCG CGTGCGAAGTTTGCCCGGCGGGGTCCTACTGCTCGAACACTGGGAGCTCG CCGGAGGTCTGCACCGAGGGGTCGTACTCGCTCGACAACTGGGCGTACTG CGTGTCATGCCCGCCGGGACAGTTCTGTTTCAACACCAATCAGGTTTGTG CAGGTCTATCTCTGTACATAAACACGGTAATGTTATCTATGTGTTGTTTT CCCTTTCATCGGCAGACAAGTGCAATTTTCATTACCGGCCAACAAGAGTG TGCGTCCTGGGCAGCTCTCCTTAACGTTCGTATGATTGGAAGATCGTCAC CCAGTGGTTGTACAGCTGGTACACAACTTGGAGTTATCTTCTTACCGTAT AATGTCCAGTTTTGTCCTGAGCAGTTCAGCATGTTGTGGCCCCGTTTGCT TTTCCTAGGTCGGCTACCGCCTCTTCAACCTCTCACAAGTCGCTTCCTAC GGAACAAGACACCGCTTGCACCCCAACAACTCTCACCACACTGTTTGAGC CGTCGGCATGACAGGCGCTCTCGTCCCTCGCGAGACTTCTGCGCGTCTCT ATTCCTCAAGTCTCAATTTTCCAAGGAACGTTGTCTCTATATGTCTTTAT AAGAAGTATCTCGTGTTTTGTGCGAAGGAATGGAACTTCGGAAATGGCAT CTTGTATAAACGCTACATAGTTCGGTAGTTCCACCCGTCTCGTGACTAAC TTTGTTGATCCAGTTCTCGCCCCCCGCCCTCCGCCCCGTGCGCCCGACCC GTCATATGGACGTCCCTTTGTCCAAACGTACCCCACACCATGTAACACCA TACTCAAGGTGCCGACGGAATGCCCGGCAGGCACGGCCTCCCCTGGCGGC GCAACCAACTGCACTACGTGCGCCGACGGTACGTACTCCGACACCATCGG CTCCACAGTGTGCACCTCTTGCCCCGCCGGAAAGTCGTGCGAGGACAAGT CGGCAGATCCAGAGCCCTGCACCAACGGCACCTTTAGCCAGATTGGCGAT ACATCATGCTCGGTCTGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig523:22295..23562-

>mRNA_L-elsbetiae_contig523.13340.1 ID=mRNA_L-elsbetiae_contig523.13340.1|Name=mRNA_L-elsbetiae_contig523.13340.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=936bp|location=Sequence derived from alignment at L-elsbetiae_contig523:22295..23562- (Laminarionema elsbetiae ELsaHSoW15)
TCCGCCACTTGTTCCCCCTGCCCGGCCGGGCACTCGTGCAGCTCGGCGGC
GGCGGCACCCGTGGCGTGCCTGGCGGGAGAGTTTGCCAGCGCCGGTGCTC
TGAGCTGCTCAGTCTGCGCGGACGGCAACTACAACATGCTCGAGGCGCAG
CAGTTCTGCCAGGCCTGCCCGGTCGGCCACGAGTGCCCCGACAAGACTTC
GGAGCCGACTCGGTGCTCCTCGGGGTCGTACAGCTCCGGGAACGCCACCG
CGTGCGAATCCGCCACTTGTTCCCCCTGCCCGGCCGGGCACTCGTGCAGC
TCGGCGGCGGCGGCACCCGTGGCGTGCCTGGCGGGAGAGTTTGCCAGCGC
CGGTGCTCTGAGCTGCTCAGTCTGCGCGGACGGCAACTACAACATGCTCG
AGGCGCAGCAGTTCTGCCAGGCCTGCCCGGTCGGCCACGAGTGCCCCGAC
AAGACTTCGGAGCCGACTCGGTGCTCCTCGGGGTCGTACAGCTCCGGGAA
CGCCACCGCGTGCGAAGTGCCGACGGAATGCCCGGCAGGCACGGCCTCCC
CTGGCGGCGCAACCAACTGCACTACGTGCGCCGACGGTACGTACTCCGAC
ACCATCGGCTCCACAGTGTGCACCTCTTGCCCCGCCGGAAAGTCGTGCGA
GGACAAGTCGGCAGATCCAGAGCCCTGCACCAACGGCACCTTTAGCCAGA
TTGGCGATACATCATGCTCGGTCTGCGTGCCGACGGAATGCCCGGCAGGC
ACGGCCTCCCCTGGCGGCGCAACCAACTGCACTACGTGCGCCGACGGTAC
GTACTCCGACACCATCGGCTCCACAGTGTGCACCTCTTGCCCCGCCGGAA
AGTCGTGCGAGGACAAGTCGGCAGATCCAGAGCCCTGCACCAACGGCACC
TTTAGCCAGATTGGCGATACATCATGCTCGGTCTGC
back to top