mRNA_L-elsbetiae_contig5208.13305.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5208.13305.1
Unique NamemRNA_L-elsbetiae_contig5208.13305.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5208.13305.1 vs. uniprot
Match: D7G2C9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C9_ECTSI)

HSP 1 Score: 295 bits (756), Expect = 5.580e-99
Identity = 161/223 (72.20%), Postives = 177/223 (79.37%), Query Frame = 1 
Query:    1 LACWEKGIVWWSRLYGWILLPFAAVILGTRFPGGASPEGAFCYNGIAPRAGSDLTTTQNARSFGINNLLLVIQFGLLLGLFVKPMLVRVEGTQSGGAVYQRVVLRNVICTAGIVTSYSTTTLVVVLALLRESLENNKSAQIRDVMLAVNSLGTLCLTEIALPLGFSSCMKACSAAVVTENPTNTQAVGKTNKT-ATAAAAAT-----RSIKIAPLEELPPLAP 651
            LA WEK I WWSRLYGW+ LP  A++LGTRFPGG  P G FCYNGI P   S+LTT+ NA+SFGINN+LLV+QF LLLGLFV+PMLVRVEG QSGGAVY+RVVLRNV CTAGIV SY+ TTLVVV+ALLRES+E+NKSAQIRDV LA NSLGTLCLTEI LPLGF SCMKACS      N T TQAVG+T     TAAA AT      +IKI PLEELPP AP
Sbjct:    2 LAWWEKAIRWWSRLYGWVYLPLMALMLGTRFPGGTDPAGTFCYNGIVPTGASELTTSNNAQSFGINNVLLVVQFILLLGLFVQPMLVRVEGAQSGGAVYRRVVLRNVFCTAGIVISYAITTLVVVIALLRESVESNKSAQIRDVALAANSLGTLCLTEITLPLGFRSCMKACSTGTAMANSTKTQAVGQTTANPGTAAAGATIISTTTTIKIIPLEELPPQAP 224
[Close]
BLAST of mRNA_L-elsbetiae_contig5208.13305.1 vs. uniprot
Match: A0A6H5JY97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY97_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 1.850e-43
Identity = 90/176 (51.14%), Postives = 118/176 (67.05%), Query Frame = 1 
Query:    1 LACWEKGIVWWSRLYGWILLPFAAVILGTRFPGGASPEGA---FCYNGIAPRAGSDLTTTQNARSFGINNLLLVIQFGLLLGLFVKPMLVRVEGTQSGGAVYQRVVLRNVICTAGIVTSYSTTTLVVVLALLRESLENNKSAQIRDVMLAVNSLGTLCLTEIALPLGFSSCMKACS 519
            LA WE  IVW SR Y WI LP  AV++  +F GG + E +   FC NG      +D     N   +G N   LVIQF LLL LFV+P+LVR+EG+QSG A+Y+ VV++N+ CT  +VT+Y+ TT+VV+ AL+R+S ++N ++   D+   VN   TLCLTEIALPLGFSSC KACS
Sbjct:  150 LAWWETVIVWISRGYAWIYLPIVAVVIPYQFRGGTNDEASVKTFCVNGYHMDDDTD-EVNDNVLGYGSNMGSLVIQFVLLLILFVRPLLVRLEGSQSGEAMYRMVVIKNITCTIAVVTAYAVTTVVVIAALIRQSNDSNTASLFADITPLVNQFVTLCLTEIALPLGFSSCWKACS 324
[Close]
BLAST of mRNA_L-elsbetiae_contig5208.13305.1 vs. uniprot
Match: A0A6H5K249_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K249_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 5.700e-41
Identity = 83/174 (47.70%), Postives = 113/174 (64.94%), Query Frame = 1 
Query:    1 LACWEKGIVWWSRLYGWILLPFAAVILGTRFPGGASPEGAFCYNGIAPRAGSDLTTTQNARSFGINNLLLVIQFGLLLGLFVKPMLVRVEGTQSGGAVYQRVVLRNVICTAGIVTSYSTTTLVVVLALLRESLENNKSAQIRDVMLAVNSLGTLCLTEIALPLGFSSCMKACSA 522
            LA WE  I WWSR YGW++L   A  L  +     S EG FC   +  +   D+T + +A  F INN +L+IQF LLL +FVKP+++    TQSGGAVY+R+V+RNV CT  I  +Y+ TT++VVL  L  +  + K+AQ+ D++   N   TLCLTE++LPLGFSSC+KA  A
Sbjct:   32 LAIWEACITWWSRFYGWVVLTTGAFFLAAQASSVPSLEGTFCLT-LDLQEDEDVTFS-DALGFVINNGILIIQFALLLAIFVKPLMIPQGHTQSGGAVYRRLVMRNVACTIAITFTYAVTTVIVVLGFLTTAPGSIKAAQLADLLPTANIFVTLCLTELSLPLGFSSCVKAIKA 203
[Close]
BLAST of mRNA_L-elsbetiae_contig5208.13305.1 vs. uniprot
Match: A0A6H5JPA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA3_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 1.540e-39
Identity = 83/174 (47.70%), Postives = 112/174 (64.37%), Query Frame = 1 
Query:    1 LACWEKGIVWWSRLYGWILLPFAAVILGTRFPGGASPEGAFCYNGIAPRAGSDLTTTQNARSFGINNLLLVIQFGLLLGLFVKPMLVRVEGTQSGGAVYQRVVLRNVICTAGIVTSYSTTTLVVVLALLRESLENNKSAQIRDVMLAVNSLGTLCLTEIALPLGFSSCMKACSA 522
            LA WE  I WWSR YGW++L   A+ L  +     S EG FC   +  +   D+T +     F INN +L+IQF LLL +FVKP+++    TQSGGAVY+R+V+RNV CT  I  +Y+ TT++VVL  L  +  + K+AQ+ D++   N   TLCLTEI+LPLGFSSC+KA  A
Sbjct:  133 LAIWEACITWWSRFYGWVVLTTGALFLAAQASSVPSLEGTFCLT-LDLKEDEDVTFSDTL-GFVINNGILIIQFALLLAMFVKPLMIPQGHTQSGGAVYRRLVMRNVACTIAITFTYAVTTVIVVLGFLTTAPGSIKAAQLADLLPTANIFVTLCLTEISLPLGFSSCVKAIKA 304
[Close]
BLAST of mRNA_L-elsbetiae_contig5208.13305.1 vs. uniprot
Match: A0A6H5JPA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA0_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 2.240e-39
Identity = 74/159 (46.54%), Postives = 102/159 (64.15%), Query Frame = 1 
Query:    1 LACWEKGIVWWSRLYGWILLPFAAVILGTRFPGGASPEGAFCYNGIAPRAGSDLTTTQNARSFGINNLLLVIQFGLLLGLFVKPMLVRVEGTQSGGAVYQRVVLRNVICTAGIVTSYSTTTLVVVLALLRESLENNKSAQIRDVMLAVNSLGTLCLTEI 477
            L  WE GI WWSR + WI LP +  +LG  FPG  + EG  C+N       ++     +   F  NN+LL +Q+ LLL +F+KPMLV    TQSGGAVY+RVV+RN++CT GI  +Y  TT+VVVLALL    + +K+A + D++ ++N   TLCLTE+
Sbjct:   87 LTSWENGITWWSRFWAWIYLPVSGTVLGLSFPGEVNSEGTACFNSYGEE--TETREVGDVAGFAGNNVLLTVQYVLLLAMFIKPMLVSHGNTQSGGAVYRRVVIRNIVCTIGIACAYVITTVVVVLALLSSRPDTDKAAAVGDIVPSINICVTLCLTEV 243
[Close]
BLAST of mRNA_L-elsbetiae_contig5208.13305.1 vs. uniprot
Match: D8LG96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG96_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 5.480e-36
Identity = 81/173 (46.82%), Postives = 107/173 (61.85%), Query Frame = 1 
Query:    1 LACWEKGIVWWSRLYGWILLPFAAVILGTRFPGGASPEGAFCYNGIAPRAGSDLTTTQNARSFGINNLLLVIQFGLLLGLFVKPMLVRVEGTQSGGAVYQRVVLRNVICTAGIVTSYSTTTLVVVLALLRESLENNKSAQIRDVMLAVNSLGTLCLTEIALPLGFSSCMKACS 519
            LA WE  IVW SR Y WI LP  AV +  +F GG + E  FC NG      +D    +N R +G N   L+IQF LLL LFV+P+LVR+EG+QSG A+Y+RVV++N+ CT  +VT+Y+ TT+VV+ ALLR++ ++N                      IALPLGF+SC KACS
Sbjct:  150 LAWWETAIVWISRGYAWIYLPIVAVAIPYQFRGGTNDERTFCINGYNMDDDAD-EVHENIRGYGSNMGSLIIQFVLLLILFVRPLLVRLEGSQSGEAIYRRVVIKNITCTIAVVTAYAVTTVVVIAALLRQNNDSN---------------------TIALPLGFTSCWKACS 300
[Close]
BLAST of mRNA_L-elsbetiae_contig5208.13305.1 vs. uniprot
Match: D8LG97_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG97_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 3.610e-33
Identity = 62/133 (46.62%), Postives = 90/133 (67.67%), Query Frame = 1 
Query:    1 LACWEKGIVWWSRLYGWILLPFAAVILGTRFPGGASPEGAFCYNGIA--PRAGSDLTTTQNARSFGINNLLLVIQFGLLLGLFVKPMLVRVEGTQSGGAVYQRVVLRNVICTAGIVTSYSTTTLVVVLALLRE 393
            L+CWEKG++W  R + WI LP A++ +   +PGG + EG FC NG         +   + NA  + + N +L++Q+ LLL LFV+P++VR+EG QSGGAVY+ VV+RN+ CT  +V SY  TT+V V+ALLR+
Sbjct:  166 LSCWEKGVIWICRAFAWIYLPLASIFVSATYPGGTNEEGTFCENGFKRDEDVNYEREASDNAYGYAVTNAMLLVQYVLLLILFVRPLMVRLEGAQSGGAVYRSVVIRNISCTVAVVVSYIITTIVTVIALLRQ 298
[Close]
BLAST of mRNA_L-elsbetiae_contig5208.13305.1 vs. uniprot
Match: D8LN54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN54_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 6.210e-33
Identity = 62/121 (51.24%), Postives = 78/121 (64.46%), Query Frame = 1 
Query:    1 LACWEKGIVWWSRLYGWILLPFAAVILGTRFPGGASPEGAFCYNGIAPRAGSDLTTTQNARSFGINNLLLVIQFGLLLGLFVKPMLVRVEGTQSGGAVYQRVVLRNVICTAGIVTSYSTTT 363
            L CWEKGI WWSR + WI LP +A  LG  FPG  + EG  C+N    R  +D     +   F  NN+LL +Q+ LLL +F+KPMLV    TQSGGAVY+RVV+RN++CT GI  +Y  TT
Sbjct:   77 LTCWEKGITWWSRFWAWIYLPVSATFLGLTFPGEVNSEGTACFNSY--REETDTAEVGDVAGFASNNVLLTVQYVLLLAMFIKPMLVSQGNTQSGGAVYRRVVIRNIVCTIGIACAYVITT 195
[Close]
BLAST of mRNA_L-elsbetiae_contig5208.13305.1 vs. uniprot
Match: A0A6H5JQ65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ65_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 8.070e-31
Identity = 61/133 (45.86%), Postives = 88/133 (66.17%), Query Frame = 1 
Query:    1 LACWEKGIVWWSRLYGWILLPFAAVILGTRFPGGASPEGAFCYNGIA--PRAGSDLTTTQNARSFGINNLLLVIQFGLLLGLFVKPMLVRVEGTQSGGAVYQRVVLRNVICTAGIVTSYSTTTLVVVLALLRE 393
            L+CWEKG++W  R + WI LP A++ +   +PG    +G FC N          +   + NA  + + N +L++Q+ LLL LFV+P++VR+EG QSGGAVY+ VV+RNV CTA +V SY  TT+V V+ALLR+
Sbjct:  120 LSCWEKGVIWICRAFAWIYLPLASIFVSATYPGANIYQGTFCENSFNRDEDVNYEREASDNAFGYAVTNAMLLVQYVLLLILFVRPLMVRLEGVQSGGAVYRSVVVRNVSCTAAVVVSYIITTIVTVIALLRQ 252
[Close]
BLAST of mRNA_L-elsbetiae_contig5208.13305.1 vs. uniprot
Match: D8LN45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN45_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 3.170e-28
Identity = 69/151 (45.70%), Postives = 98/151 (64.90%), Query Frame = 1 
Query:   70 AVILGTRFPGGASPEGAFCYNGIAPRAGSDLTTTQNARSFGINNLLLVIQFGLLLGLFVKPMLVRVEGTQSGGAVYQRVVLRNVICTAGIVTSYSTTTLVVVLALLRESLENNKSAQIRDVMLAVNSLGTLCLTEIALPLGFSSCMKACSA 522
            A IL ++     SPEG FC   +  +   D+T +     F  NN +LVIQF LLL +FVKP+++     QSGGAVY+R+V+RNV CT GI  +Y+ TT++VVL  L  +  + K+AQ+ D++   N   TLC+TE++LPLGFSSC+K+  A
Sbjct:   25 AFILASQVSSVPSPEGNFCL-ALDLQENEDVTFSDTL-GFVFNNGILVIQFVLLLAMFVKPLMIPQGHIQSGGAVYRRLVMRNVACTIGITFTYAVTTVIVVLGFLTTAPGSIKAAQLADLLPTANIFVTLCVTEMSLPLGFSSCVKSIKA 173
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5208.13305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G2C9_ECTSI5.580e-9972.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JY97_9PHAE1.850e-4351.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K249_9PHAE5.700e-4147.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPA3_9PHAE1.540e-3947.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPA0_9PHAE2.240e-3946.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG96_ECTSI5.480e-3646.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LG97_ECTSI3.610e-3346.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LN54_ECTSI6.210e-3351.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQ65_9PHAE8.070e-3145.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN45_ECTSI3.170e-2845.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5208contigL-elsbetiae_contig5208:8299..11460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_001610.1
Exons6
Model size654
Cds size654
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5208.13305.1prot_L-elsbetiae_contig5208.13305.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5208 8299..11460 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816534.5153656-CDS-L-elsbetiae_contig5208:8298..84781622816534.5153656-CDS-L-elsbetiae_contig5208:8298..8478Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5208 8299..8478 -
1691683629.3665142-CDS-L-elsbetiae_contig5208:8298..84781691683629.3665142-CDS-L-elsbetiae_contig5208:8298..8478Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5208 8299..8478 -
1622816534.5256405-CDS-L-elsbetiae_contig5208:9012..90751622816534.5256405-CDS-L-elsbetiae_contig5208:9012..9075Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5208 9013..9075 -
1691683629.381045-CDS-L-elsbetiae_contig5208:9012..90751691683629.381045-CDS-L-elsbetiae_contig5208:9012..9075Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5208 9013..9075 -
1622816534.5361326-CDS-L-elsbetiae_contig5208:9936..101281622816534.5361326-CDS-L-elsbetiae_contig5208:9936..10128Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5208 9937..10128 -
1691683629.391767-CDS-L-elsbetiae_contig5208:9936..101281691683629.391767-CDS-L-elsbetiae_contig5208:9936..10128Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5208 9937..10128 -
1622816534.546914-CDS-L-elsbetiae_contig5208:10582..106871622816534.546914-CDS-L-elsbetiae_contig5208:10582..10687Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5208 10583..10687 -
1691683629.405351-CDS-L-elsbetiae_contig5208:10582..106871691683629.405351-CDS-L-elsbetiae_contig5208:10582..10687Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5208 10583..10687 -
1622816534.5606618-CDS-L-elsbetiae_contig5208:10792..108471622816534.5606618-CDS-L-elsbetiae_contig5208:10792..10847Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5208 10793..10847 -
1691683629.417342-CDS-L-elsbetiae_contig5208:10792..108471691683629.417342-CDS-L-elsbetiae_contig5208:10792..10847Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5208 10793..10847 -
1622816534.5750124-CDS-L-elsbetiae_contig5208:11401..114601622816534.5750124-CDS-L-elsbetiae_contig5208:11401..11460Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5208 11402..11460 -
1691683629.4269173-CDS-L-elsbetiae_contig5208:11401..114601691683629.4269173-CDS-L-elsbetiae_contig5208:11401..11460Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5208 11402..11460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5208.13305.1

>prot_L-elsbetiae_contig5208.13305.1 ID=prot_L-elsbetiae_contig5208.13305.1|Name=mRNA_L-elsbetiae_contig5208.13305.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=218bp
LACWEKGIVWWSRLYGWILLPFAAVILGTRFPGGASPEGAFCYNGIAPRA
GSDLTTTQNARSFGINNLLLVIQFGLLLGLFVKPMLVRVEGTQSGGAVYQ
RVVLRNVICTAGIVTSYSTTTLVVVLALLRESLENNKSAQIRDVMLAVNS
LGTLCLTEIALPLGFSSCMKACSAAVVTENPTNTQAVGKTNKTATAAAAA
TRSIKIAPLEELPPLAP*
back to top

mRNA from alignment at L-elsbetiae_contig5208:8299..11460-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5208.13305.1 ID=mRNA_L-elsbetiae_contig5208.13305.1|Name=mRNA_L-elsbetiae_contig5208.13305.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3162bp|location=Sequence derived from alignment at L-elsbetiae_contig5208:8299..11460- (Laminarionema elsbetiae ELsaHSoW15)
CTTGCCTGCTGGGAGAAGGGTATTGTCTGGTGGTCACGGCTCTACGGGTG
GATACTCCTGTGTCTTCATTGTCCACCTGGAATAAAAATACTGGGACCCA
AACCCATGACATTCTAACTCTGGTGGCCGCGAAGTACACAACGAACCCCG
CTTTCTATCGCAACAGCCCTAGCATCGAAAAACAATACTTTAAAATATGC
AGATGTCGTGGCAGGCCTTCGGAAATTCCATTATACATCAGTTGGCTAGA
CTACATAATCGCATTTTTCTTGCTAACTGTGCAGTATTTCCGTCCCTCAT
GAGTATTTCTTCGTGTGAAAGCACCAATTCAATACTATCCTTACTAGACC
GCTTCCAGAGGCAGCGGCAATGCGCAGTGTCTCGCTTTCACATCGGCAAA
CATAAAGTCACTAAGGACTAGATCCCGCCTGGAGCAGCTAAAACACAGCA
CGAAGGGGCAACATATTCCATCAGTTAACAGCACTCCCACCAAAGATCCA
GTTTATCAGCTGTTGTCCCAGTCCTATCTACCAAGGTCAACAAAACGGAA
AATCATTCAACGTGCCAACGACGACCCCCCACTAAAACATCCCCGCCGGA
TATTTGCGCGCAGTCCCTTCGCCGCGGTTATACTGGGTACAAGATTTCCC
GGCGGCGCTAGTCCTGAGGTAAGCAGTCGCCACAGCAGCATGTTGCGCCC
GCCTTCTAATCCAGACCTCGCACTCGAAGCGCTTGCCAGTTCGCTCACGT
CGTCTACCTCGTTTGTCGCACAGGGGGCATTTTGCTACAATGGTATTGCG
CCAAGGGCCGGATCAGACTTGACCACGACCCAAAACGCCCGCAGCTTCGG
GATCAACAACTTATTGCTGGTTATTCAGGTGCGTTTGCAGGCAGATTGAT
TGCTGGGAAGAAGGTGGTGCAAACTCGCGCACAACCTTAAAGCATCTGAC
TGGCGAAAAAGATTCTGATCCTCGGAGGAAATCGGACATTTTGGCTTTAC
CGAGAGGGGAGTTAAGAAACAAGAGCAACGGGTTCGCTGTGAAATATTCT
GGTAGGTTTCTCTCGAAACGACAGCACCAGATTTGATGCTTTCGCTGATG
ATAGTTAAAGCCTTGCCTCGATGCCCCCTTATGGTGCGCGAACGTTCGCC
CTCTAGCGGGGAATGGTTGTATCGTTGCTATGATGCGCGTGCGAGGTCTA
CTTCAAAGCAGACACCATCTCAAGTACACCGCCATGTTGTCAGTTTTGAT
CTACATTTTCGCAACGTGTGAACAATGCGGTGTGGCTTCAATCCCTCGTT
TTGCATCGGGCATGATACACATATGTACGCAGTTCGGTCTGCTGCTTGGG
CTATTCGTGAAGCCTATGCTAGTCCGCGTTGAAGGAACGCAGTCGGGAGG
TGCAGTTTACCAGAGGGTGGTGTTGCGCAACGTCATCTGCACAGCTGGCA
TCGTTACCTCCTACTCGACCACAACGCTGGTTGTTGTCCTTGCTTTATTG
CGCGAATCGTTGGAAAATAACAAGGTGCGACTTACTGGATATAACTTTTT
GGGTGGGAGCCTTTCTTCATCGCACACAATACTACTCCATGTTGACGCAT
GCCTTGAAGCCCCGTATTTCGGAAGAACACCGATGACCTTCTTCGTAGAC
CGAGTGTGGCATGGAAGCCCTCGCGTGCTTAATGTTTGTCATGAAGCGTT
CGAGCGAGATACTCTCCGCCATCATACTGATGCTTTTAGATTATATGGAG
GTATTATTCTTGTTGTGCGTAGATCGGTCCTCCAGCAAGAAACTAAACAT
GAGGAATCCGCTACAATATGCCATACCCGTGGATGTTTCGGGCACCCGGT
TAGATGTGTATTGACTTGGCACTCGTGATCATTTTTTAGCTTCGCCGATA
CAAGGCGATACAAATATGGATGCGTTCACCACCCCGCGCTTGGCTGTAGT
CTGCAATATTAGAGGTTTCATTGTGAAATGTTCCATGTGGCACTGGTTTT
TGGCGTGGGTCAAACATTTTGCCATCCTGTCCGGCGGGAGAAAATTGAAG
CAGTTTATTCTGGTATGTAGACGGCGCCAACGCTGATGGCTGTCTAAATA
CTTGAAGCTATACTTCGTGTATGCAGTATCTATATATGCAGTATCTATAA
CTCCTAAAGGTTTCCTTGGTATTTGCGATCTCAGCCTCCTCGCGTAAGGC
TGTTTTTCCGTTGCGAGAGGGCGGCTTCCTTTTGCATGTACATAAAAGTA
TTAGACTACAACGAGGCTTTCACTCTTGGATGGTGCAGGTAAAGCTCGTT
CGTTGTACATATGTACCTATCTAAATACTGTAGAAATATCTGAAACATTC
CTTTTTTCGTGCCTGCTGACTCTTGTACCGCGCAGTCTGCTCAGATACGG
GACGTGATGTTAGCGGTTAACTCCCTCGGGACGCTCTGCCTAACCGAGGT
GGGTCCTGTTCGCGAAGGGGGTGGACCGATGACGTCTACAAATCAGAGAT
ATTTACCGCAGTGAAGTGGTCATGAGGCTTGAACCGAAAATAAATTAAAT
GTCACCAGAGGGTATGTACTACTTTGTAGTTCGATGTCCATCTATCGGAA
CCAGGCAAAACTATGCGGCGGCACTCCAAGAATCAGAGATCATTGGCTAG
CCTAGGTAAAGAGGGTGTCCACGTGTCCACCACCCATAATCTACTTGCTC
AACGATGATGAGACGGTGCGACGCTGACAATCGTTCCGCAGCCTGCTTCG
ACCACGGCTTCGACGATTATCACTAGTCTATGTAGTGTCTGGAACTGGAA
GAAGAGTAGCTCTAATTCTCCGGCAAGGATGGGTATCTAGGTCCCAAAGG
TTTTCCCGCACGAAGACTCTGAGTGTGATCACACAGCACCAACCCCATGT
GCTTACTTGTCTGAACCCCCCCCAATCTTCTTTTCTTTCCGCCTGCACAC
CGTCTGCCGTCTTTTCGCGTCCCATCCTTCAGATCGCGTTGCCGCTAGGG
TTCTCTAGCTGCATGAAGGCATGCTCTGCGGCGGTTGTCACCGAAAATCC
CACAAACACCCAGGCCGTAGGAAAGACCAACAAGACGGCCACTGCTGCCG
CTGCCGCCACCAGGAGCATCAAAATAGCCCCTCTAGAGGAGCTACCGCCG
TTGGCACCATAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5208:8299..11460-

>mRNA_L-elsbetiae_contig5208.13305.1 ID=mRNA_L-elsbetiae_contig5208.13305.1|Name=mRNA_L-elsbetiae_contig5208.13305.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1308bp|location=Sequence derived from alignment at L-elsbetiae_contig5208:8299..11460- (Laminarionema elsbetiae ELsaHSoW15)
CTTGCCTGCTGGGAGAAGGGTATTGTCTGGTGGTCACGGCTCTACGGGTG
GATACTCCTCTTGCCTGCTGGGAGAAGGGTATTGTCTGGTGGTCACGGCT
CTACGGGTGGATACTCCTTCCCTTCGCCGCGGTTATACTGGGTACAAGAT
TTCCCGGCGGCGCTAGTCCTGAGTCCCTTCGCCGCGGTTATACTGGGTAC
AAGATTTCCCGGCGGCGCTAGTCCTGAGGGGGCATTTTGCTACAATGGTA
TTGCGCCAAGGGCCGGATCAGACTTGACCACGACCCAAAACGCCCGCAGC
TTCGGGATCAACAACTTATTGCTGGTTATTCAGGGGGCATTTTGCTACAA
TGGTATTGCGCCAAGGGCCGGATCAGACTTGACCACGACCCAAAACGCCC
GCAGCTTCGGGATCAACAACTTATTGCTGGTTATTCAGTTCGGTCTGCTG
CTTGGGCTATTCGTGAAGCCTATGCTAGTCCGCGTTGAAGGAACGCAGTC
GGGAGGTGCAGTTTACCAGAGGGTGGTGTTGCGCAACGTCATCTGCACAG
CTGGCATCGTTACCTCCTACTCGACCACAACGCTGGTTGTTGTCCTTGCT
TTATTGCGCGAATCGTTGGAAAATAACAAGTTCGGTCTGCTGCTTGGGCT
ATTCGTGAAGCCTATGCTAGTCCGCGTTGAAGGAACGCAGTCGGGAGGTG
CAGTTTACCAGAGGGTGGTGTTGCGCAACGTCATCTGCACAGCTGGCATC
GTTACCTCCTACTCGACCACAACGCTGGTTGTTGTCCTTGCTTTATTGCG
CGAATCGTTGGAAAATAACAAGTCTGCTCAGATACGGGACGTGATGTTAG
CGGTTAACTCCCTCGGGACGCTCTGCCTAACCGAGTCTGCTCAGATACGG
GACGTGATGTTAGCGGTTAACTCCCTCGGGACGCTCTGCCTAACCGAGAT
CGCGTTGCCGCTAGGGTTCTCTAGCTGCATGAAGGCATGCTCTGCGGCGG
TTGTCACCGAAAATCCCACAAACACCCAGGCCGTAGGAAAGACCAACAAG
ACGGCCACTGCTGCCGCTGCCGCCACCAGGAGCATCAAAATAGCCCCTCT
AGAGGAGCTACCGCCGTTGGCACCATAGATCGCGTTGCCGCTAGGGTTCT
CTAGCTGCATGAAGGCATGCTCTGCGGCGGTTGTCACCGAAAATCCCACA
AACACCCAGGCCGTAGGAAAGACCAACAAGACGGCCACTGCTGCCGCTGC
CGCCACCAGGAGCATCAAAATAGCCCCTCTAGAGGAGCTACCGCCGTTGG
CACCATAG
back to top