mRNA_L-elsbetiae_contig514.13212.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig514.13212.1
Unique NamemRNA_L-elsbetiae_contig514.13212.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig514.13212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig514contigL-elsbetiae_contig514:33570..34663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_004240.1
Exons2
Model size551
Cds size549
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816525.259542-CDS-L-elsbetiae_contig514:33571..340431622816525.259542-CDS-L-elsbetiae_contig514:33571..34043Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig514 33572..34043 -
1691683622.7303257-CDS-L-elsbetiae_contig514:33571..340431691683622.7303257-CDS-L-elsbetiae_contig514:33571..34043Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig514 33572..34043 -
1622816525.2726388-CDS-L-elsbetiae_contig514:34586..346631622816525.2726388-CDS-L-elsbetiae_contig514:34586..34663Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig514 34587..34663 -
1691683622.7432466-CDS-L-elsbetiae_contig514:34586..346631691683622.7432466-CDS-L-elsbetiae_contig514:34586..34663Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig514 34587..34663 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig514.13212.1prot_L-elsbetiae_contig514.13212.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig514 33572..34663 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig514.13212.1

>prot_L-elsbetiae_contig514.13212.1 ID=prot_L-elsbetiae_contig514.13212.1|Name=mRNA_L-elsbetiae_contig514.13212.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=183bp
GGSSQSTPLPHYGSSFSTHGSSVHSSASAPSTMAAGGAQSSRAAAGAGGG
GNLDPDPSAPTPRSRSNNKRLPTAAGVPAKLLAPPGEEYGFSAGYGSLGV
AATSGSTTTEEGFPVEPGRSGSSDSGGRAGDGRRSSADSVVTDAEASSHG
SVDGGAPEGGGEQRSKDKPDPPPEFGGVLEAAE
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mRNA from alignment at L-elsbetiae_contig514:33570..34663-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig514.13212.1 ID=mRNA_L-elsbetiae_contig514.13212.1|Name=mRNA_L-elsbetiae_contig514.13212.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1094bp|location=Sequence derived from alignment at L-elsbetiae_contig514:33570..34663- (Laminarionema elsbetiae ELsaHSoW15)
GGTGGGAGCTCTCAGTCGACGCCACTCCCGCACTACGGCAGCAGTTTCAG
CACGCACGGCAGCAGCGTGCACTCCAGGTCAGTGGTTTGTCTTTGCTTTT
GCTTGTGCTTTTGGTGTACAATATTAGCCGTTGCTCTATGGCCGCTGTTA
GTTTTTTTTTTTGGGGGGGGGTGGCCTTCCGGGTATTTCTCGTCTCCGGC
AGCGTTTGTTTGTATTTGTGTTTTGTGTGTGTGGGGGGGGGGGTCGTTAT
GTAGCGTGCGATCACCGTTGTGTTGCGCTTCTGGGGGTATTTTTTAGTAT
TGTTATCTCTCACTACACGGACCTGTTGTCTCGAGACGAGCACGGTGCTA
TGTTTTATCTGTGCTCTCTTAGGAATGAGGTGTACAACCGAACAGTGACC
AGTTCTTGCCTCCCTTCTGAACGTGGTCTCTTCGTTTGCAACAGGGGGGG
GGGTACACTTCGTGTTGCTTCCCATCTCCCATCTCGTCGTTCATTCCTCG
ATGCCGGCAAATGCTGCTGCTTTGCGCATGTCGTCCCGCAAGCACGCAAA
CTCACCCCCCCCCCCCTCGCTCCTCGTCTTGAAACACTTGTTTGTTCTCC
ACCACTGACTCTCGCCACAGTGCAAGCGCACCCAGCACCATGGCCGCGGG
CGGCGCCCAGTCCAGTAGAGCTGCCGCTGGGGCCGGGGGCGGCGGCAACC
TCGACCCCGACCCGAGCGCTCCAACCCCTCGATCGAGGTCGAACAACAAG
CGGCTACCGACGGCAGCGGGCGTGCCCGCTAAGCTCTTGGCCCCGCCGGG
AGAAGAATACGGGTTCAGCGCAGGCTACGGGTCGTTGGGCGTGGCGGCGA
CGAGCGGGTCGACGACCACCGAGGAAGGATTCCCGGTCGAGCCCGGCCGC
AGCGGTAGTAGTGACAGCGGCGGCCGCGCCGGCGACGGTCGGCGAAGCTC
GGCCGATTCAGTGGTGACGGACGCGGAGGCGTCCAGCCACGGCAGCGTGG
ACGGCGGCGCGCCGGAGGGCGGCGGCGAGCAACGGAGCAAGGACAAGCCG
GACCCGCCGCCCGAGTTCGGCGGCGTCTTGGAGGCAGCGGAGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig514:33570..34663-

>mRNA_L-elsbetiae_contig514.13212.1 ID=mRNA_L-elsbetiae_contig514.13212.1|Name=mRNA_L-elsbetiae_contig514.13212.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1098bp|location=Sequence derived from alignment at L-elsbetiae_contig514:33570..34663- (Laminarionema elsbetiae ELsaHSoW15)
GGTGGGAGCTCTCAGTCGACGCCACTCCCGCACTACGGCAGCAGTTTCAG
CACGCACGGCAGCAGCGTGCACTCCAGGGTGGGAGCTCTCAGTCGACGCC
ACTCCCGCACTACGGCAGCAGTTTCAGCACGCACGGCAGCAGCGTGCACT
CCAGTGCAAGCGCACCCAGCACCATGGCCGCGGGCGGCGCCCAGTCCAGT
AGAGCTGCCGCTGGGGCCGGGGGCGGCGGCAACCTCGACCCCGACCCGAG
CGCTCCAACCCCTCGATCGAGGTCGAACAACAAGCGGCTACCGACGGCAG
CGGGCGTGCCCGCTAAGCTCTTGGCCCCGCCGGGAGAAGAATACGGGTTC
AGCGCAGGCTACGGGTCGTTGGGCGTGGCGGCGACGAGCGGGTCGACGAC
CACCGAGGAAGGATTCCCGGTCGAGCCCGGCCGCAGCGGTAGTAGTGACA
GCGGCGGCCGCGCCGGCGACGGTCGGCGAAGCTCGGCCGATTCAGTGGTG
ACGGACGCGGAGGCGTCCAGCCACGGCAGCGTGGACGGCGGCGCGCCGGA
GGGCGGCGGCGAGCAACGGAGCAAGGACAAGCCGGACCCGCCGCCCGAGT
TCGGCGGCGTCTTGGAGGCAGCGGAGTGCAAGCGCACCCAGCACCATGGC
CGCGGGCGGCGCCCAGTCCAGTAGAGCTGCCGCTGGGGCCGGGGGCGGCG
GCAACCTCGACCCCGACCCGAGCGCTCCAACCCCTCGATCGAGGTCGAAC
AACAAGCGGCTACCGACGGCAGCGGGCGTGCCCGCTAAGCTCTTGGCCCC
GCCGGGAGAAGAATACGGGTTCAGCGCAGGCTACGGGTCGTTGGGCGTGG
CGGCGACGAGCGGGTCGACGACCACCGAGGAAGGATTCCCGGTCGAGCCC
GGCCGCAGCGGTAGTAGTGACAGCGGCGGCCGCGCCGGCGACGGTCGGCG
AAGCTCGGCCGATTCAGTGGTGACGGACGCGGAGGCGTCCAGCCACGGCA
GCGTGGACGGCGGCGCGCCGGAGGGCGGCGGCGAGCAACGGAGCAAGGAC
AAGCCGGACCCGCCGCCCGAGTTCGGCGGCGTCTTGGAGGCAGCGGAG
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