mRNA_L-elsbetiae_contig514.13207.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig514.13207.1
Unique NamemRNA_L-elsbetiae_contig514.13207.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig514.13207.1 vs. uniprot
Match: A0A6H5JGB4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JGB4_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.310e-23
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 2 
Query:  860 PHNEKKRPRAATALEEVREEERAPAPP-FQPFVRQEPATPQSFGSSMFQSMTWGVGMALAFTAVGMFFR 1063
            P   K+RPRA+TALEEVREEERAPA P FQPF++Q+PA PQ+FGSSM QSMTWGVGMALAFTAVGM FR
Sbjct:   33 PRKAKQRPRASTALEEVREEERAPAAPKFQPFLQQDPA-PQTFGSSMLQSMTWGVGMALAFTAVGMMFR 100
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BLAST of mRNA_L-elsbetiae_contig514.13207.1 vs. uniprot
Match: V9F8I3_PHYPR (Uncharacterized protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=V9F8I3_PHYPR)

HSP 1 Score: 55.1 bits (131), Expect = 5.870e-6
Identity = 25/45 (55.56%), Postives = 31/45 (68.89%), Query Frame = 2 
Query:  926 APAPPFQPFVRQEPATPQSFGSSMFQSMTWGVGMALAFTAVGMFF 1060
            AP PP  PFV+ E  TPQ+FG  M +S  WG+GMA AF+ VG+ F
Sbjct:   58 APPPPANPFVQSEQQTPQTFGGVMKESFVWGLGMAAAFSVVGIIF 102
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BLAST of mRNA_L-elsbetiae_contig514.13207.1 vs. uniprot
Match: V9F9J0_PHYPR (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=V9F9J0_PHYPR)

HSP 1 Score: 55.1 bits (131), Expect = 7.690e-6
Identity = 25/45 (55.56%), Postives = 31/45 (68.89%), Query Frame = 2 
Query:  926 APAPPFQPFVRQEPATPQSFGSSMFQSMTWGVGMALAFTAVGMFF 1060
            AP PP  PFV+ E  TPQ+FG  M +S  WG+GMA AF+ VG+ F
Sbjct:   58 APPPPANPFVQSEQQTPQTFGGVMKESFVWGLGMAAAFSVVGIIF 102
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BLAST of mRNA_L-elsbetiae_contig514.13207.1 vs. uniprot
Match: H3H280_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H280_PHYRM)

HSP 1 Score: 54.3 bits (129), Expect = 1.460e-5
Identity = 25/45 (55.56%), Postives = 31/45 (68.89%), Query Frame = 2 
Query:  926 APAPPFQPFVRQEPATPQSFGSSMFQSMTWGVGMALAFTAVGMFF 1060
            AP PP  PFV+ E   PQSFG  M +S  WG+GMA+AF+ VG+ F
Sbjct:   54 APPPPANPFVQSEQQAPQSFGGVMKESFLWGMGMAVAFSVVGVVF 98
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BLAST of mRNA_L-elsbetiae_contig514.13207.1 vs. uniprot
Match: G4YSZ9_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YSZ9_PHYSP)

HSP 1 Score: 52.8 bits (125), Expect = 2.750e-5
Identity = 28/60 (46.67%), Postives = 36/60 (60.00%), Query Frame = 2 
Query:  881 PRAATALEEVREEERAPAPPFQPFVRQEPATPQSFGSSMFQSMTWGVGMALAFTAVGMFF 1060
            P+ + AL E      AP PP  PFV  E   PQ+FG  M +S  WG+GMA+AF+ VG+ F
Sbjct:   38 PKLSNALTEAP----APPPPANPFVHSEQQPPQTFGGVMKESFLWGMGMAVAFSVVGIVF 93
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BLAST of mRNA_L-elsbetiae_contig514.13207.1 vs. uniprot
Match: A0A0N7L8A4_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L8A4_PLAHL)

HSP 1 Score: 52.0 bits (123), Expect = 7.410e-5
Identity = 32/82 (39.02%), Postives = 44/82 (53.66%), Query Frame = 2 
Query:  821 DFQVLPFPPPPLTPHNEKKR--PRAATALEEVREEERAPAPPFQPFVRQEPATPQSFGSSMFQSMTWGVGMALAFTAVGMFF 1060
            DF  L    P     +E +R  P+   AL +V     +P PP  PF++ E   PQ+FG  M +S  WG+GMA AF+ VG+ F
Sbjct:   11 DFSTLKRAKPIRVKKSESRRVIPKQTNALTQV-----SPPPPTIPFLQSEQQAPQTFGGIMKESFMWGMGMAAAFSVVGIIF 87
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig514.13207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JGB4_9PHAE5.310e-2379.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
V9F8I3_PHYPR5.870e-655.56Uncharacterized protein n=6 Tax=Phytophthora paras... [more]
V9F9J0_PHYPR7.690e-655.56Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]
H3H280_PHYRM1.460e-555.56Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
G4YSZ9_PHYSP2.750e-546.67Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A0N7L8A4_PLAHL7.410e-539.02Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig514contigL-elsbetiae_contig514:9732..11725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_001200.1
Exons2
Model size1099
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig514.13207.1prot_L-elsbetiae_contig514.13207.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig514 10420..11692 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816525.3092296-UTR-L-elsbetiae_contig514:9731..104191622816525.3092296-UTR-L-elsbetiae_contig514:9731..10419Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig514 9732..10419 +
1691683622.754728-UTR-L-elsbetiae_contig514:9731..104191691683622.754728-UTR-L-elsbetiae_contig514:9731..10419Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig514 9732..10419 +
1622816525.3431888-UTR-L-elsbetiae_contig514:11692..117251622816525.3431888-UTR-L-elsbetiae_contig514:11692..11725Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig514 11693..11725 +
1691683622.784094-UTR-L-elsbetiae_contig514:11692..117251691683622.784094-UTR-L-elsbetiae_contig514:11692..11725Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig514 11693..11725 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816525.3222618-CDS-L-elsbetiae_contig514:10419..107471622816525.3222618-CDS-L-elsbetiae_contig514:10419..10747Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig514 10420..10747 +
1691683622.7641323-CDS-L-elsbetiae_contig514:10419..107471691683622.7641323-CDS-L-elsbetiae_contig514:10419..10747Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig514 10420..10747 +
1622816525.3326218-CDS-L-elsbetiae_contig514:11642..116921622816525.3326218-CDS-L-elsbetiae_contig514:11642..11692Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig514 11643..11692 +
1691683622.7743826-CDS-L-elsbetiae_contig514:11642..116921691683622.7743826-CDS-L-elsbetiae_contig514:11642..11692Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig514 11643..11692 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig514.13207.1

>prot_L-elsbetiae_contig514.13207.1 ID=prot_L-elsbetiae_contig514.13207.1|Name=mRNA_L-elsbetiae_contig514.13207.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
MMLCRPDQQRHPCIFIPLVLSHLDSLRNDSVRNLPKYAPHGDGFDFQVLP
FPPPPLTPHNEKKRPRAATALEEVREEERAPAPPFQPFVRQEPATPQSFG
SSMFQSMTWGVGMALAFTAVGMFFR*
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mRNA from alignment at L-elsbetiae_contig514:9732..11725+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig514.13207.1 ID=mRNA_L-elsbetiae_contig514.13207.1|Name=mRNA_L-elsbetiae_contig514.13207.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1994bp|location=Sequence derived from alignment at L-elsbetiae_contig514:9732..11725+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTGTGTGTGCGCCCTTGGAGCGGTGTGGCCGGGGCTCCGACGTTTGGG
GTTGTCGCTATAACGGATGTCGAATGTCGTCCGATATATGTAACTGCACG
ATGGCGCTATATCGGGTTGAAATTACAAGTTTTGATGCGAGTTTTTGATG
CCGCTTACATCGTCGGCAATTCCGCTATTCAGGTTGCCGCTATAGCGAGC
CACCTTCTCTGTAACGTACGAACTCAGTAGTAAGCATCAGTGAGCACTGC
GGTGCTGGGGCCGTTGGGGCACGGATGACGAACACCGGTTATCTCGGCCA
CTCTTCGAGAGGGCGATCGTAAGATAGGCCCCCGTGCGCCGCAGCTTTGA
AATACGCCATGATAGTGTGTGGCGGCGAGAATATCTACACGTTGAAGAGA
CGCGGGTGGCGACATGTGTATGTACGTGTGTCTGTTGAGTACCGGGCTTG
ATGGCGGTCAATAAACTTGACATCCTGCGCAGTTGATTACCTATCGTTTG
CGCAGTTGGCTGGCCAGTATGTACAGCAACCGCCAGCAATGTGTGACGAG
CCGGTAGAATATCAGCGTTGTCGTAATGCTTAGGTTCGACATGCTGCATC
CTACAAGCAGATACTCGTATGTATAAATATATAGTTTCCACACCCAAGCG
TGAGCCGAGAGATGAGGAAAGTCCGGCCGTTACGTTGAATGATGTTGTGC
CGGCCTGACCAGCAACGCCACCCTTGCATCTTCATCCCTCTCGTTCTCTC
ACATCTCGATTCCTTGCGAAACGATTCCGTACGAAATCTACCTAAATACG
CCCCGCACGGTGACGGTTTTGATTTTCAAGTGTTGCCCTTTCCACCCCCA
CCCCTGACCCCCCATAATGAGAAGAAACGGCCGCGCGCAGCGACAGCGCT
CGAGGAAGTCCGGGAAGAGGAGCGTGCGCCAGCGCCGCCTTTCCAGCCTT
TCGTTCGGCAAGAACCGGCCACCCCGCAGAGTTTTGGGAGCAGCATGTTC
CAGTCCATGACCTGGGGTGAGTACGGCCTATCGTAGATCTTCACGATGAC
GGTAATGAGTGCTGGTGACGGCGATGCTGCCCGAACCTGCGGTGGTAAAT
GGATCGATGTTTACGTCGTGTATTGTCGAGGAGGACAAAGAGAAACAGCT
CTCGGGAGGCACAATATGTTCGTATGCCAAGAATCCCAAGAGTCAGAACA
CCCAAAGACGCCGTCGAACCGGCACGTAACCGTCATATTGAAGGTTCACA
CCGGCAGCCCTTTTGCACAAACTCCTGCTCGAAATCATTTACCCCAAATT
GTCGCAGACCCAAATTATCCGCCCTTGTCGGTGTGATGTTCGAGGAGGCT
ACGTGTCGGTTCGACGGTCTATTGGGTGCTCTGACTCCCGGATTCTTGGG
CTTGTGTTCGCCTCCGAGAGCTATCTCTCTTGGTCTTCCTCCATAATACA
CAACGAGAGCATCAGTCGATTTGCCACCGCATTTTTGGCCAGCGTCGCCC
TCACACGCAAGAGTGCACCAAGATGGGCAGCCCACCTCGAGGTCGGTATC
TTAATCCCCACACCCAACACTCATTGCCGTATTGCGTCTCAGTTTATGAA
CGGCACGCAGTACGGCAACGAGTGCTGGTGCGGGGATGAAGACACCGACC
TCGAGGTGCGCGGCCCATCTTATGCACTCTCGCGTGCGAGGGGGGCGCTG
CCCAAACCTGCGGTGGCGAATCGATTGATGCTCACGTCGTGTATTATCGA
GGAGGACAAAGAGAGACAGCTCTCGGGAGGCAAAATACACAGCCAAGAAT
CCAAGAGTCAAAACACCCAATAGACCGTCGAACTGACACGTAACCGTCCA
TCGTGAAGATCACACCGACAGCCCTGTCGCACAAACTTGTGCTCGAAATC
GTTTACCCCAGGTGTCGGAATGGCGCTAGCCTTCACTGCCGTGGGCATGT
TCTTCCGATAACAACGGAAATCGAGGAGGTCTTCGCGCGTGCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig514:9732..11725+

>mRNA_L-elsbetiae_contig514.13207.1 ID=mRNA_L-elsbetiae_contig514.13207.1|Name=mRNA_L-elsbetiae_contig514.13207.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig514:9732..11725+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGTTGTGCCGGCCTGACCAGCAACGCCACCCTTGCATCTTCATCCC
TCTCGTTCTCTCACATCTCGATTCCTTGCGAAACGATTCCGTACGAAATC
TACCTAAATACGCCCCGCACGGTGACGGTTTTGATTTTCAAGTGTTGCCC
TTTCCACCCCCACCCCTGACCCCCCATAATGAGAAGAAACGGCCGCGCGC
AGCGACAGCGCTCGAGGAAGTCCGGGAAGAGGAGCGTGCGCCAGCGCCGC
CTTTCCAGCCTTTCGTTCGGCAAGAACCGGCCACCCCGCAGAGTTTTGGG
AGCAGCATGTTCCAGTCCATGACCTGGGATGATGTTGTGCCGGCCTGACC
AGCAACGCCACCCTTGCATCTTCATCCCTCTCGTTCTCTCACATCTCGAT
TCCTTGCGAAACGATTCCGTACGAAATCTACCTAAATACGCCCCGCACGG
TGACGGTTTTGATTTTCAAGTGTTGCCCTTTCCACCCCCACCCCTGACCC
CCCATAATGAGAAGAAACGGCCGCGCGCAGCGACAGCGCTCGAGGAAGTC
CGGGAAGAGGAGCGTGCGCCAGCGCCGCCTTTCCAGCCTTTCGTTCGGCA
AGAACCGGCCACCCCGCAGAGTTTTGGGAGCAGCATGTTCCAGTCCATGA
CCTGGGGTGTCGGAATGGCGCTAGCCTTCACTGCCGTGGGCATGTTCTTC
CGATAAGTGTCGGAATGGCGCTAGCCTTCACTGCCGTGGGCATGTTCTTC
CGATAA
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