mRNA_L-elsbetiae_contig5132.13200.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5132.13200.1
Unique NamemRNA_L-elsbetiae_contig5132.13200.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5132.13200.1 vs. uniprot
Match: A0A6H5JHT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT5_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 2.830e-33
Identity = 63/93 (67.74%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:    4 VLCCIGVAASVGAA-KWNRGRPKRRMLGNIASGRDFIDVLAKEVAELEAQIALAAEINDLETARDEHERETREYDEQVTQVLTHLDKCEGGGD 279
            V   + VAA+   A KW  G  KRRMLGNIASGR+FID L+ EVA+LEA IALAAE +DL+TAR EHER++RE+DE VTQVLTHLDKC GGG+
Sbjct:   16 VFALVAVAATTAVARKWKSGGSKRRMLGNIASGREFIDTLSAEVADLEATIALAAEASDLDTARQEHERKSREHDESVTQVLTHLDKCTGGGE 108
[Close]
BLAST of mRNA_L-elsbetiae_contig5132.13200.1 vs. uniprot
Match: D7G4A6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4A6_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 3.080e-30
Identity = 61/93 (65.59%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:    1 AVLC-CIGVAASVGAA-KWNRGRPKRRMLGNIASGRDFIDVLAKEVAELEAQIALAAEINDLETARDEHERETREYDEQVTQVLTHLDKCEGG 273
            AV+C  + VA +   A KW  G  KRRMLGNIASGR+F+D L+ EVA+LEA IALAAE +DL+TAR E+ER++RE+DE VTQVLTHLDKC GG
Sbjct:   14 AVVCGLVAVAGTTAVARKWKSGGTKRRMLGNIASGREFLDALSAEVADLEATIALAAEASDLDTARKENERKSREHDEHVTQVLTHLDKCTGG 106
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5132.13200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHT5_9PHAE2.830e-3367.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4A6_ECTSI3.080e-3065.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5132contigL-elsbetiae_contig5132:3009..9098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_001960.1
Exons3
Model size281
Cds size279
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5132.13200.1prot_L-elsbetiae_contig5132.13200.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5132 3011..9098 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816524.5604448-CDS-L-elsbetiae_contig5132:3010..30911622816524.5604448-CDS-L-elsbetiae_contig5132:3010..3091Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5132 3011..3091 -
1691683622.281335-CDS-L-elsbetiae_contig5132:3010..30911691683622.281335-CDS-L-elsbetiae_contig5132:3010..3091Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5132 3011..3091 -
1622816524.5711634-CDS-L-elsbetiae_contig5132:4639..47531622816524.5711634-CDS-L-elsbetiae_contig5132:4639..4753Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5132 4640..4753 -
1691683622.2918684-CDS-L-elsbetiae_contig5132:4639..47531691683622.2918684-CDS-L-elsbetiae_contig5132:4639..4753Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5132 4640..4753 -
1622816524.5816936-CDS-L-elsbetiae_contig5132:9014..90981622816524.5816936-CDS-L-elsbetiae_contig5132:9014..9098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5132 9015..9098 -
1691683622.3013954-CDS-L-elsbetiae_contig5132:9014..90981691683622.3013954-CDS-L-elsbetiae_contig5132:9014..9098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5132 9015..9098 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5132.13200.1

>prot_L-elsbetiae_contig5132.13200.1 ID=prot_L-elsbetiae_contig5132.13200.1|Name=mRNA_L-elsbetiae_contig5132.13200.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
AVLCCIGVAASVGAAKWNRGRPKRRMLGNIASGRDFIDVLAKEVAELEAQ
IALAAEINDLETARDEHERETREYDEQVTQVLTHLDKCEGGGD
back to top

mRNA from alignment at L-elsbetiae_contig5132:3009..9098-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5132.13200.1 ID=mRNA_L-elsbetiae_contig5132.13200.1|Name=mRNA_L-elsbetiae_contig5132.13200.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6090bp|location=Sequence derived from alignment at L-elsbetiae_contig5132:3009..9098- (Laminarionema elsbetiae ELsaHSoW15)
GCGGTCCTCTGTTGCATCGGTGTCGCCGCGTCTGTCGGGGCTGCGAAGTG
GAACCGCGGGCGGCCCAAGAGACGCATGCTTGGGGTGAGTGCGCGCGCGG
ATGGCGTAGGCATGGATCACGCCCCTTTGTTCACCGGTCTATGTAGCTTC
ACATTCTTCGGTCGCCTGTGTTTTGATGTCGCGAAGAGGGTATCTAAGGA
TGTGAACCTGCTGCACTTGTTGCACACAACACACCCTGCTGGCTATAGAT
AGACTAGATAGACTGTTGTACATAGGGCGGGTTCCGCGCTAAAGCTCAAT
GTCTTCTCCGCCAGCCAATAAAAAACATGGAAAAAAAACGACTTCGGGAA
TCGTTCTAAAACGCCCAAAAACGACGTTTAAAAAAATGCTCCAAAAAAAA
AAGTTCATCTTCGCCTTGATTTTTTTTTTCGCAGTGTTTTCGACTTTTTT
TTTCTTGGAGCACCTCGTCAATCGCTTCCGCTTGGCCGGTTTAGGGGGGG
TAGAGCCACTCCGAAAATTGTTCCGACAAAAACTCGAAATTTGAAATAGC
CCAGCTATGATCAGCTTTGGGGAAGCCGCAAGTCGATTGCAAAGCAAAAG
TGGGACATTCCGATACTGTTATCGTGATCCCCATCCCCAAATCACCCTGT
TTCGAAGGCTGGAGAGCTTGCATCGTCGTGTGGATCGTGTTCTGCGGGAG
GGGATATTTCGGTCTATTCCCTAGTAAATCCCAGGTTTTCCCGACTTTTT
TGCATTTGCCATTGCGCAGCCGTATCAAGGTGATGTCGATCCCGATTGAA
ATTCTAACGACGGATTCGTGATCTACACCCCAAAATTACCCTAAATTAAC
CTGAATTTTTCGTAAGATTCGGAGACGTTTGAAATTTCTCTGGGGGGCCC
GCGGATGTGGTTTTACCTCAATTTTACCCACTAATTCGGGAGTAACTTAC
CGCCACGATGGCCAAATGTTCAAAACAGTATATTTTCGTGATCCCCATGA
CCTAGCGGACCTTGGTGCAAATTCCCAGAAATTGAATCCAATCCCTTGCC
GCGTTCTGAAAAACTCGTGCAAAAGATTGAGCTTTAGCCCGGAACCCGCC
TAAGATAGTCTTGTTGGATTTATTATTCCAGTGGGACACATCACCCACCT
GGGTGCACCTTTTATTGAATCCCCAGTGAGCTTCTAGATCTTGGTTCACA
AGTCACGCATGCTCCATCACCGTCTCATATGTAGATAGTCTAACTGCTGG
ACTGTCTCCGCTTTTTCGACCTTGGCATATTTGTAAAATGCCCGAACAAG
CACGCACGCACACATCAAGCACACACAGCCGATCCACCAGACCAGCCAGG
GAGCGTTGTGCTTGAAGAAAGCTGTTGGTTCGCTCACCTAGCGGCGAGCG
GGGCGATTCTTTGCATGCACATCAAACAGTCTACCTCAAACCGCGAACTC
TAAAACAAAAAAAATCCGCAGTCCCAAATCAAGACAAAACAGACCATTTT
GGTTCAAAATAAGGTTTGGGATCCGTACATTTTCCGTACTCAAAAGCTAA
TCCGTAGAGGACACGCGGAGAAGGGCGTGATGCGTGCTGGCATGTGAAGA
CCTGCTGCTGCAGCGGAGTTCTCGAGAGCCGCAGCAGTAGCTCCAAAACT
CCGCAATCGGCCGACGACATGAAACATCCACTGCTTAGTTCGCCGCCACA
GATCCCCCTGAAATGCGGGTCCGCAGCACAGTAGCTATACCACTATTTAG
CTACTGCTGGAGACCCGTGGTTGTGGAGGTTGGGATCTGCGGTGGCGAGC
ACAGCAGCGCGTGTTTGCTGTCGTTGGCCTAGATTGCGGAGTTCTGCAGC
TGTCGGAAATCCCGCCCCAGCAGCAGATCTGCACATGTCAGCACGCATCA
CACCCTTCTCCATGGTGTCTCTTACGAACATGCCGTTTAGCACGGAAAAT
CCCTGATCTCAAACCTTCTCGCGATAACAAATCTCAAACAAGCACCACAG
AAGGGGGATGCGGGGGCCTCGGAGAAAGGAACCATTCTGTGTAGTCACGG
GTCAGTACTCTAGCAAATATCCTTCGTTGCAAGGAGCCTCTGTTTAGTGC
TGGCAATAGATATGAAGATGAACACAACTTATTAGAAGCTAGCGGTTTAA
CTTGGGTTTTGAACGGGCAGATGGAGCCCGATTTTTTTTGTCTTGGGTTT
TGTGAGGGCATGTTTCCCAGCGTACCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCATCCCTCGCCCCCGGGGCGTGGGGTTTTGTTTTTTGTTTCTTTTTC
CCTCCCTTCTCCTTCGTCCCGTNNNNNNNNNNTTTTGTGTGTGGTTTTTA
GGGGGAGGGTGCGCCTGTTTTTTTTTTTTTTGGGGTGTTGGGGGGTTTTT
TTTCTCGCTCCCCCCCCCCCCCCCCCCCCCTAACCCATTTAGTACCGGAC
GCCGGTTTGGTGACGATTTGTTGACACCTAACTTTGGCCACTGTTCTACG
ACTTAGTATGTAGGTGCAATCGTAGTCTTTGGAACCCGAAAAATACCTGG
AAGTACCCTGCCGAGGTATATGGACACTATACCTCCCATAAATGCCCTCC
GCACAGCTCGACAGCAGCGCTGGGGACACAACTGGGTTGTCGCGGATATC
TCCAAAATCAAAAGAGAAAAACGTCTCCAGCGAGATTCCCAAATTCTGTA
CCTTCCGCCGCGCCCCTATGTAGCGATTGAGCAGTTAAGCTGACAGCACA
CACATACCGCTTCGCTGTAACTCTCGAGAACCAACGTCTGGCGAGCTTAG
AGCGGGCTGCTCCGCCCGCCACGCTGTTTTGTGTACTGTGGGGGCTGCTT
GGTGTGTTTATACACGCAGCAGCCCAGGGTCCCCCCCCCCATGTCCCAAA
GACAAGGAACTCTGTATTGTCTGGTACGCGAAAACGTTTGACTTGGGGGG
TTGAGTATGCAGATTGTCACTGAACCTTCAGCAAAGTTTGACTGCTGGTT
GCATAGCATGGGAACGTGTCATCAATGTTTTGGGGGTCCCTGTAGCTTGG
TTTTGGGAGGACTGTAGTTGTCGACCCAATCAGCGGGCAGCCAGATGGCG
TGACACGTCTTTTTGCGAGAACTTTTTTGTCAGCGAGGGCGTGCCTGATA
AATGGGCTACACATCCCAATTCGAACGATTTTCACGTGTCAGGAGTATCA
GTACATGGTGAACCGCTTACAGCTAGTTACTGTGATACTCACCACCCGAC
CTTGATGGTGTTCGCTTGATCATGACCACCTTCCACGTTAGGGAACACAC
ACACACACCTGCGGTTTTGCCAAGTTTTTCAAGTTTAATTCTCAGTAACA
AAGATGGCTGCTCTGTGACATCATAACTCGGCGGTTCTGCTTTGGAAATC
GCGCTTCCTGTTTTGGATGTGTGCCAATAATTTCCTGCCGAGGGACCGCG
GGAGCTCCAAAAGCGAGCCCCTGCCGGCTCACCCCTGGCCAGAAAGCTTT
CGCACAACAATCACAACCGGCTTAACCGGCCGAGCTCGCCTTGCTCCCAA
GACTTGACAATCCAAGCGCGGGTGAAGTGTTGGGACCCGAACACGAGCTG
AAAGCACTCGGCGAAAGCCGAGGTGAAAGCGTGGCGGGGGCGGCTCGTGT
TTTGCGGACTGACTCCCTCGGCACGCTGTAGGCGACGGCCTCAGCCTCAG
CCTCAGTGCACGAGCGGATCCGGTTGCAGCTTGCCCGTGTTTTGAAGCTC
TTCGAAATACGGCATGTGTCTGTTCGGTGGCGTGACAGCAAGGTTTCCCC
GCAGGCTGACGTTTCCCCATCGAAATAGATGTCGCCAAAATGGGTCCGAC
AAGGGGGGTCAAAACGCTACCTTTTGTTCTGGCTTTGCTCCTCTGATGAA
AAGGGTACAAGACACACCCCTCGCGAGTTCCTGCCCCATTTTCGAGTGAC
ACGTCCCCTTCTCTATTATTGAGGTACCTATCTTGCCGGTTCGATTCCAC
CAAACCTCTCTGCAGGGCTCGGGTCTGCGCTTCGGCACTGTTGTCTCCCG
CGTCCAAGGTGTACAACAGGCTATACCGCCCATTTCGAAGCGCATGGGTA
CGTTCGGCGCGCATCCGAAATCGACACCCGGAAAATGCTCTCGAGGACCC
TTTTTTCTTCCCTTACAAAACAAACCAAAATACGTACATACCTGCGGGGA
GATCACCCACCACCCACCCACCTCCGGGAAAGCATCGTCGGCGATTCTGT
TCTATTTGTCGAGGCAGCAGCAGCGGTAGTAGATAGCACCCCCCCCTTGA
CCATGCACCCCGTCTTCCGTCCACACGGTCACACGCGCGCCTCAGAACAT
CGCCAGTGGCCGGGACTTCATCGACGTGCTGGCGAAAGAGGTGGCTGAGT
TGGAGGCTCAGATTGCCCTGGCCGCGGAGATAAACGACCTGGAAACGGCC
CGAGACGAGGTACGTACCGTAGATCACACAATGTACCACCCCCCCCCCCG
GACATATTTTTCAAAGCTCTATCCCTCCCTTCCTCCACAGCAAGAAGAGC
GCCGGTGCGATGACACAAGATACCACCCCCCTGGACATATTTTCAAAGCT
CGATCCCTCTCTCCCTCCCTCCCCAGCAAGAAGAGCACCGGTGCGATGAC
ACAAGATACCACCTCCCCTGGACATATTTTCAAAGCTCGATCCTCTCTCC
CTCCCTCCCCAGCAAGAAGAGCATCGGTGCGATGACACAAGATACCACCC
CCGCTGGACATATTTTTCAAAGCTCAATCCCTCCCTCCTTCCCCAGCAAG
AAGAGCGCCGGTGCGATGACACAAGATACCACCCCCTGGACATATTTTCA
AAACTCGATCCCTCTCTCCCTCTCTCCCCAGCAAGAAGAGCGCCGGTTCG
ATGACACAAGATACCACCCCCCTGAACATATTTTCAAAGCTCGATCCCTC
TCTCCCTCCCTCCACAGCAAGAAGAGCGCCGGTGCCGAAAGGGGGGTGGC
GTTGGAAAGCACTAGGTGAGGGCTGTCCGAAAATATGTCATTTGGTGCTG
GCACCCTCTTCGTTACGGAGAAATCGAGCTTTGAAATCTGTCCATGGGGA
GGGGTCGTATCTTGTGTCATATACGGTACGCGAGTCGCGTGCTTTGTAGG
AGAGCGCGTTTGTATTGGCCCTACAAGACCACGCTCCACGCTTTGCACCC
AAGAGCGGTTGCGAGCTCCCGTACGGGACAGCAGGCACGTACATACACGT
ATACTAAATAGAGGAACCCCTCCTTACCGGGGATGGGTTGTCCTGAGACG
ACAGCAGCACCGGGTGAAGCCACCGCCCACCCAACTCCGGCTTTTTCGTG
TGCAGAGGCATGCGATCGAGTTAGCCTGTTTGTGCGTGAATGTGATGCAT
ATGCGGTCAGAAAGGCATATGACCATGCGCGAGAAAAATAGTGAAACCAA
CATTTTCACGTCCCAGTCTCGAGTGAAAAAAAAGCATGATGGGGGTGTGC
CCCCCCCCGTATGTATCTCAAATGGCAATATCGATTTTCTCTTGTGGGGT
TATGAAGGCTTGCTGGATGGTGGCTCACAGCGATATGTCGGTATTTTTGT
TTTTCTCGCACCCCTCGACCGACCCCCCCACCCACCCCTGTCGCTTGCCA
AGCCTTGCGCCTCTCGTGAAACCCTGTCCGCCCGCACCCCCGTCACCTCC
TAAGCCTTCCATATCTGGTGAAACCCTGTCCGCCCGCACCCCTGTCGCTT
ACCAAGCCTTCCACCTCTAGTGAAACCCTGTTCGCCAGCACCCCCGTCAC
CTACTAAGCCTTCCATATCTGGTGAAACCCTGTCCGCCCGCACCCCTGTC
GCTTACCAAGCCTTCCACCTCTCGTGAAACCCTGTCCGCCCGCACCCCCG
CCACCTACTGAGCCTTCCATATCTGGTGAAACCCTGTCCGCCCGCACCCC
TGTCGCTTACCAAGCCTTCCACCTCTCGTGAAACCCTGTCCGCCCACAAT
TGCGCAGCACGAGAGAGAAACCAGGGAGTACGACGAGCAGGTGACCCAGG
TCTTGACCCACCTGGACAAGTGCGAAGGGGGCGGCGATAT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5132:3009..9098-

>mRNA_L-elsbetiae_contig5132.13200.1 ID=mRNA_L-elsbetiae_contig5132.13200.1|Name=mRNA_L-elsbetiae_contig5132.13200.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig5132:3009..9098- (Laminarionema elsbetiae ELsaHSoW15)
GCGGTCCTCTGTTGCATCGGTGTCGCCGCGTCTGTCGGGGCTGCGAAGTG
GAACCGCGGGCGGCCCAAGAGACGCATGCTTGGGGCGGTCCTCTGTTGCA
TCGGTGTCGCCGCGTCTGTCGGGGCTGCGAAGTGGAACCGCGGGCGGCCC
AAGAGACGCATGCTTGGGAACATCGCCAGTGGCCGGGACTTCATCGACGT
GCTGGCGAAAGAGGTGGCTGAGTTGGAGGCTCAGATTGCCCTGGCCGCGG
AGATAAACGACCTGGAAACGGCCCGAGACGAGAACATCGCCAGTGGCCGG
GACTTCATCGACGTGCTGGCGAAAGAGGTGGCTGAGTTGGAGGCTCAGAT
TGCCCTGGCCGCGGAGATAAACGACCTGGAAACGGCCCGAGACGAGCACG
AGAGAGAAACCAGGGAGTACGACGAGCAGGTGACCCAGGTCTTGACCCAC
CTGGACAAGTGCGAAGGGGGCGGCGATCACGAGAGAGAAACCAGGGAGTA
CGACGAGCAGGTGACCCAGGTCTTGACCCACCTGGACAAGTGCGAAGGGG
GCGGCGAT
back to top