mRNA_L-elsbetiae_contig5121.13189.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5121.13189.1
Unique NamemRNA_L-elsbetiae_contig5121.13189.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5121.13189.1 vs. uniprot
Match: A0A6H5KTU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTU2_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 2.820e-24
Identity = 56/85 (65.88%), Postives = 64/85 (75.29%), Query Frame = 3 
Query:   12 FAL-PEHTSAGSNTDKNAELASEVRMGEVQEDRREGGVCAACLAEGVPRAFLLSNKHARKGPRICSTIRGKWRRQGGLTSSASAD 263
            FAL P+HTSAGSNT  NAELASE++ G     RRE GVCAACLA GV R FLLSNKH RKGP+IC  I+ K+R +GG TS+ S D
Sbjct:  167 FALMPDHTSAGSNTHNNAELASEIKTGGEGGGRREAGVCAACLAAGVRRDFLLSNKHERKGPKICLAIQEKFREEGGHTSTTSDD 251
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BLAST of mRNA_L-elsbetiae_contig5121.13189.1 vs. uniprot
Match: A0A6H5KTA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA8_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.620e-23
Identity = 52/82 (63.41%), Postives = 61/82 (74.39%), Query Frame = 3 
Query:   18 LPEHTSAGSNTDKNAELASEVRMGEVQEDRREGGVCAACLAEGVPRAFLLSNKHARKGPRICSTIRGKWRRQGGLTSSASAD 263
            +P+HTSAGSNTD +AEL SE+R       RRE GVCAACLA GV R FLLSNKH RKGP+IC  I+ K+R +GG TS+ S D
Sbjct:  173 MPDHTSAGSNTDNHAELVSEIRTWGAGGGRREAGVCAACLAAGVRRDFLLSNKHERKGPKICLAIQKKFREEGGHTSTTSDD 254
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BLAST of mRNA_L-elsbetiae_contig5121.13189.1 vs. uniprot
Match: A0A6H5JT80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT80_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 5.870e-20
Identity = 51/80 (63.75%), Postives = 56/80 (70.00%), Query Frame = 3 
Query:   24 EHTSAGSNTDKNAELASEVRMGEVQEDRREGGVCAACLAEGVPRAFLLSNKHARKGPRICSTIRGKWRRQGGLTSSASAD 263
            E   AGSNTD NAELAS+VR G     RRE GVCAACLA GV R  LLSNKHARKGP+IC  I+ K R +GG TS+   D
Sbjct:  205 EGVGAGSNTDNNAELASKVRTGGAGGGRREAGVCAACLAAGVRRDSLLSNKHARKGPKICLAIQKKIREEGGHTSTTGDD 284
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BLAST of mRNA_L-elsbetiae_contig5121.13189.1 vs. uniprot
Match: A0A6H5KFZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFZ2_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 5.500e-18
Identity = 43/63 (68.25%), Postives = 46/63 (73.02%), Query Frame = 3 
Query:   24 EHTSAGSNTDKNAELASEVRMGEVQEDRREGGVCAACLAEGVPRAFLLSNKHARKGPRICSTI 212
            E   AGSNTD NAELASE+R G     RRE GVCAACL+ GV R FLLSNKH RKGP+IC  I
Sbjct:   71 EGVGAGSNTDNNAELASEIRTGGAGGGRREVGVCAACLSAGVRRDFLLSNKHERKGPKICLAI 133
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BLAST of mRNA_L-elsbetiae_contig5121.13189.1 vs. uniprot
Match: A0A6H5L2W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W2_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.500e-9
Identity = 34/67 (50.75%), Postives = 41/67 (61.19%), Query Frame = 3 
Query:   24 EHTSAGSNTDKNAELASEVRMGEVQEDRREGGVCAACLAEGVPRAFLLSNKHARKGPRICSTIRGKW 224
            EHT+AGSNT+KNA + S+VRMG      +  G CAAC A GV   FL    H+RKG   C  IR +W
Sbjct: 1357 EHTAAGSNTEKNANVLSDVRMGA----GKTKGTCAACRAAGVGLEFLARKSHSRKGAAKCDAIREEW 1419
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5121.13189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KTU2_9PHAE2.820e-2465.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTA8_9PHAE1.620e-2363.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT80_9PHAE5.870e-2063.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFZ2_9PHAE5.500e-1868.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2W2_9PHAE1.500e-950.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5121contigL-elsbetiae_contig5121:1710..2251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_000190.1
Exons1
Model size542
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5121.13189.1prot_L-elsbetiae_contig5121.13189.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5121 1793..2020 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816523.2464576-UTR-L-elsbetiae_contig5121:1709..17921622816523.2464576-UTR-L-elsbetiae_contig5121:1709..1792Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5121 1710..1792 +
1691683621.3201668-UTR-L-elsbetiae_contig5121:1709..17921691683621.3201668-UTR-L-elsbetiae_contig5121:1709..1792Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5121 1710..1792 +
1622816523.2682972-UTR-L-elsbetiae_contig5121:2020..22511622816523.2682972-UTR-L-elsbetiae_contig5121:2020..2251Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5121 2021..2251 +
1691683621.3490317-UTR-L-elsbetiae_contig5121:2020..22511691683621.3490317-UTR-L-elsbetiae_contig5121:2020..2251Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5121 2021..2251 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816523.2589025-CDS-L-elsbetiae_contig5121:1792..20201622816523.2589025-CDS-L-elsbetiae_contig5121:1792..2020Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5121 1793..2020 +
1691683621.3364666-CDS-L-elsbetiae_contig5121:1792..20201691683621.3364666-CDS-L-elsbetiae_contig5121:1792..2020Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5121 1793..2020 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5121.13189.1

>prot_L-elsbetiae_contig5121.13189.1 ID=prot_L-elsbetiae_contig5121.13189.1|Name=mRNA_L-elsbetiae_contig5121.13189.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=76bp
MGEVQEDRREGGVCAACLAEGVPRAFLLSNKHARKGPRICSTIRGKWRRQ
GGLTSSASADNLSEDNGDSASDVGA*
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mRNA from alignment at L-elsbetiae_contig5121:1710..2251+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5121.13189.1 ID=mRNA_L-elsbetiae_contig5121.13189.1|Name=mRNA_L-elsbetiae_contig5121.13189.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=542bp|location=Sequence derived from alignment at L-elsbetiae_contig5121:1710..2251+ (Laminarionema elsbetiae ELsaHSoW15)
TAGCAACAGCGTTCGCGTTGCCGGAGCACACCTCTGCAGGCAGCAACACC
GACAAGAACGCGGAGCTCGCGTCGGAGGTTAGAATGGGGGAGGTGCAGGA
GGACAGGAGGGAGGGTGGAGTGTGTGCGGCGTGCTTGGCCGAAGGAGTTC
CGCGCGCTTTCCTACTCTCCAACAAACACGCGCGAAAGGGACCCAGGATC
TGCAGTACTATCCGCGGGAAATGGCGGCGGCAGGGGGGACTCACGTCCAG
CGCCAGCGCCGACAACCTCAGCGAGGACAACGGAGACAGTGCCAGCGACG
TCGGTGCTTGAGAAGAAACTCGCAGTTCGCGGCGCTCGTGGTGTAACATT
TTCGCGCGGAGAATATGCCAACCTCGGGCGTTCCTAAGCTACCGGTCGGC
CCGCGACGACTTGTGTGTCCTTTTCATGTGTCTCGCCGAGGTTTTTAGGC
GGCGTCGTGCGTGTCATGGGAGTGTCATGCCTCCTAACCCGTGGATGTTT
TTAAAGAAAAATCAGACAATTGCCAATGGTGGCAGTTTTTTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5121:1710..2251+

>mRNA_L-elsbetiae_contig5121.13189.1 ID=mRNA_L-elsbetiae_contig5121.13189.1|Name=mRNA_L-elsbetiae_contig5121.13189.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=456bp|location=Sequence derived from alignment at L-elsbetiae_contig5121:1710..2251+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGGAGGTGCAGGAGGACAGGAGGGAGGGTGGAGTGTGTGCGGCGTG
CTTGGCCGAAGGAGTTCCGCGCGCTTTCCTACTCTCCAACAAACACGCGC
GAAAGGGACCCAGGATCTGCAGTACTATCCGCGGGAAATGGCGGCGGCAG
GGGGGACTCACGTCCAGCGCCAGCGCCGACAACCTCAGCGAGGACAACGG
AGACAGTGCCAGCGACGTCGGTGCTTGAATGGGGGAGGTGCAGGAGGACA
GGAGGGAGGGTGGAGTGTGTGCGGCGTGCTTGGCCGAAGGAGTTCCGCGC
GCTTTCCTACTCTCCAACAAACACGCGCGAAAGGGACCCAGGATCTGCAG
TACTATCCGCGGGAAATGGCGGCGGCAGGGGGGACTCACGTCCAGCGCCA
GCGCCGACAACCTCAGCGAGGACAACGGAGACAGTGCCAGCGACGTCGGT
GCTTGA
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