mRNA_L-elsbetiae_contig5121.13188.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5121.13188.1
Unique NamemRNA_L-elsbetiae_contig5121.13188.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5121.13188.1 vs. uniprot
Match: A0A6H5JHD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHD0_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 6.680e-25
Identity = 65/144 (45.14%), Postives = 86/144 (59.72%), Query Frame = 1 
Query:    1 MHDLGTQFLESINGAIAAKATKRSDFPRTHWARAAVAVLNRVIYGGAKFIANEIRHKLSLEPLTRPAAEVVEAAERTTMTVVKGQPHQTAEQKKHESDKRYETRDAKTREHARRKLLVDQAHADNLLPTPGADQVSKGAVRAQL 432
            M+ LGT FLES+NG IAAKATKRSDF RTHW+RA +A++NR    G   +AN +R  + L PLT  AAE +EA +R    VV GQ H+T EQ+   S  RY+ +D  T + A  K   D+   +N +   G       A+R +L
Sbjct:    1 MYGLGTNFLESMNGTIAAKATKRSDFNRTHWSRAQIAMMNRTHDDGPVGVANLVRSHMGLPPLTNRAAEKMEARDRRGKKVVVGQLHRTEEQRTKASTDRYKNKDRVTTQTAANKANHDKRAKENKILPYGYGTHGVAALRKKL 144
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BLAST of mRNA_L-elsbetiae_contig5121.13188.1 vs. uniprot
Match: A0A6H5JRT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT7_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 9.350e-24
Identity = 76/176 (43.18%), Postives = 102/176 (57.95%), Query Frame = 1 
Query:    1 MHDLGTQFLESINGAIAAKATKRSDFPRTHWARAAVAVLNRVIYGGAKFIANEIRHKLSLEPLTRPAAEVVEAAERTTMTVVKGQPHQTAEQKKHESDKRYETRDAKTREHARRKLLVDQAHADNLLPTPGADQVSKGAVRAQLDAGLKDRDSDEEDG--EEAGAAAPRGGASRQR 522
            M DLGTQFLES+NG+IA+KA+KR+DFP THW RA +AV+NR +  G   +AN IR +L L  L+ PAA+VV   ER    V     +QT +QKK  +  RY T+  K+R  A  K L     A+N +   G   V   +VR + DA   D     +DG  ++ G A  +G  SR+R
Sbjct:   91 MPDLGTQFLESVNGSIASKASKRNDFPLTHWPRAQIAVMNRTLRCGTLGVANLIREELRLPILSAPAAKVVSDHERKNTRVSLTGEYQTDDQKKQRTADRYTTKADKSRLIAVWKGLSAADVAENEIHPSGFGAVDLASVRGKFDAITGDDKGPGKDGRAQDGGTAGGKGKGSRKR 266
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BLAST of mRNA_L-elsbetiae_contig5121.13188.1 vs. uniprot
Match: A0A6H5L2W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W2_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.650e-22
Identity = 67/147 (45.58%), Postives = 93/147 (63.27%), Query Frame = 1 
Query:    1 MHDLGTQFLESINGAIAAKATKRSDFPRTHWARAAVAVLNRVIYGGAKFIANEIRHKLSLEPLTRPAAEVVEAAE-RTTMTVVKGQPHQTAEQKKHESDKRYETRDAKTREHARRKLLVDQAHADNLLPTPGADQVSKGAVRAQLDA 438
            M DLGTQFLES+NG+IAAKATKR DFP TH+ RA +AV+NR + GGA+ +AN IR +++L  LT PAA+V+   + + T    +G    T ++KK  +D +Y TR  K+   A  K +  +  A+N +   G   V  G+VR  LDA
Sbjct: 1133 MPDLGTQFLESVNGSIAAKATKRCDFPVTHYPRAQIAVMNRTLPGGAEEVANLIREEMALPRLTPPAAKVISDNDVKNTRLNARGDS-MTGDEKKQRTDDKYATRADKSHLIAVWKGISSKDAANNEIDPSGFGLVDVGSVRETLDA 1278
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5121.13188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JHD0_9PHAE6.680e-2545.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT7_9PHAE9.350e-2443.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2W2_9PHAE1.650e-2245.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5121contigL-elsbetiae_contig5121:1130..1669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size542
Cds size540
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816523.2091992-CDS-L-elsbetiae_contig5121:1129..16691622816523.2091992-CDS-L-elsbetiae_contig5121:1129..1669Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5121 1130..1669 +
1691683621.3082714-CDS-L-elsbetiae_contig5121:1129..16691691683621.3082714-CDS-L-elsbetiae_contig5121:1129..1669Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5121 1130..1669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5121.13188.1prot_L-elsbetiae_contig5121.13188.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5121 1130..1669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5121.13188.1

>prot_L-elsbetiae_contig5121.13188.1 ID=prot_L-elsbetiae_contig5121.13188.1|Name=mRNA_L-elsbetiae_contig5121.13188.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=180bp
MHDLGTQFLESINGAIAAKATKRSDFPRTHWARAAVAVLNRVIYGGAKFI
ANEIRHKLSLEPLTRPAAEVVEAAERTTMTVVKGQPHQTAEQKKHESDKR
YETRDAKTREHARRKLLVDQAHADNLLPTPGADQVSKGAVRAQLDAGLKD
RDSDEEDGEEAGAAAPRGGASRQRGGRGKG
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mRNA from alignment at L-elsbetiae_contig5121:1130..1669+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5121.13188.1 ID=mRNA_L-elsbetiae_contig5121.13188.1|Name=mRNA_L-elsbetiae_contig5121.13188.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig5121:1130..1669+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACGACCTGGGCACCCAGTTCTTGGAGAGCATCAACGGCGCCATCGC
AGCGAAGGCCACCAAGCGCAGCGATTTCCCCAGAACGCACTGGGCGCGTG
CTGCTGTCGCTGTGCTCAACCGCGTGATCTACGGGGGCGCTAAGTTCATC
GCCAACGAGATCCGCCACAAACTTAGCCTGGAACCGCTGACGAGACCGGC
CGCCGAGGTCGTCGAGGCCGCCGAGAGGACAACCATGACTGTCGTGAAGG
GTCAGCCACACCAGACGGCGGAACAGAAGAAGCACGAGTCCGACAAGCGC
TACGAAACGAGGGACGCCAAGACCCGTGAACACGCGCGCCGCAAGCTCCT
CGTCGACCAGGCTCACGCCGATAACTTGCTGCCGACTCCCGGTGCCGACC
AAGTCTCGAAAGGGGCGGTGCGCGCGCAGCTCGACGCCGGCCTCAAGGAC
AGAGACAGCGACGAAGAGGATGGCGAAGAGGCCGGTGCTGCGGCGCCGCG
AGGGGGGGCGTCTCGGCAGAGGGGCGGCAGGGGCAAGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5121:1130..1669+

>mRNA_L-elsbetiae_contig5121.13188.1 ID=mRNA_L-elsbetiae_contig5121.13188.1|Name=mRNA_L-elsbetiae_contig5121.13188.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1080bp|location=Sequence derived from alignment at L-elsbetiae_contig5121:1130..1669+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACGACCTGGGCACCCAGTTCTTGGAGAGCATCAACGGCGCCATCGC
AGCGAAGGCCACCAAGCGCAGCGATTTCCCCAGAACGCACTGGGCGCGTG
CTGCTGTCGCTGTGCTCAACCGCGTGATCTACGGGGGCGCTAAGTTCATC
GCCAACGAGATCCGCCACAAACTTAGCCTGGAACCGCTGACGAGACCGGC
CGCCGAGGTCGTCGAGGCCGCCGAGAGGACAACCATGACTGTCGTGAAGG
GTCAGCCACACCAGACGGCGGAACAGAAGAAGCACGAGTCCGACAAGCGC
TACGAAACGAGGGACGCCAAGACCCGTGAACACGCGCGCCGCAAGCTCCT
CGTCGACCAGGCTCACGCCGATAACTTGCTGCCGACTCCCGGTGCCGACC
AAGTCTCGAAAGGGGCGGTGCGCGCGCAGCTCGACGCCGGCCTCAAGGAC
AGAGACAGCGACGAAGAGGATGGCGAAGAGGCCGGTGCTGCGGCGCCGCG
AGGGGGGGCGTCTCGGCAGAGGGGCGGCAGGGGCAAGGGGATGCACGACC
TGGGCACCCAGTTCTTGGAGAGCATCAACGGCGCCATCGCAGCGAAGGCC
ACCAAGCGCAGCGATTTCCCCAGAACGCACTGGGCGCGTGCTGCTGTCGC
TGTGCTCAACCGCGTGATCTACGGGGGCGCTAAGTTCATCGCCAACGAGA
TCCGCCACAAACTTAGCCTGGAACCGCTGACGAGACCGGCCGCCGAGGTC
GTCGAGGCCGCCGAGAGGACAACCATGACTGTCGTGAAGGGTCAGCCACA
CCAGACGGCGGAACAGAAGAAGCACGAGTCCGACAAGCGCTACGAAACGA
GGGACGCCAAGACCCGTGAACACGCGCGCCGCAAGCTCCTCGTCGACCAG
GCTCACGCCGATAACTTGCTGCCGACTCCCGGTGCCGACCAAGTCTCGAA
AGGGGCGGTGCGCGCGCAGCTCGACGCCGGCCTCAAGGACAGAGACAGCG
ACGAAGAGGATGGCGAAGAGGCCGGTGCTGCGGCGCCGCGAGGGGGGGCG
TCTCGGCAGAGGGGCGGCAGGGGCAAGGGG
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