mRNA_L-elsbetiae_contig5119.13183.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5119.13183.1
Unique NamemRNA_L-elsbetiae_contig5119.13183.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5119.13183.1 vs. uniprot
Match: A0A6H5JWW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW4_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 3.420e-20
Identity = 56/90 (62.22%), Postives = 65/90 (72.22%), Query Frame = 1
Query:    1 MLLRWGADETSLDNDGDSPEDLFDRVHEDR---TCSEADIERVRLLLARAPADRAWRRRGWLAMLRS--RASRANAIAGGEGAEESNDAG 255
            +LLRWGADET+L+NDG +P DL D    +    TCSEA+IERVRLLLARAPAD+A RRR WL MLRS  R +RA     G+  E SNDAG
Sbjct:  574 LLLRWGADETALNNDGKTPADLLDEHDNENDRTTCSEAEIERVRLLLARAPADQARRRRCWLVMLRSFARTTRATTDETGDAHEGSNDAG 663          
BLAST of mRNA_L-elsbetiae_contig5119.13183.1 vs. uniprot
Match: D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 2.510e-19
Identity = 53/90 (58.89%), Postives = 63/90 (70.00%), Query Frame = 1
Query:    1 MLLRWGADETSLDNDGDSPEDLFDRVHEDR---TCSEADIERVRLLLARAPADRAWRRRGWLAMLRS--RASRANAIAGGEGAEESNDAG 255
            +LLRWGADET+L+N G +P  L D    +    TCSEA+I RVR+LLARAPADRAWRRR WL MLRS  R ++A     G+  E SNDAG
Sbjct:  360 LLLRWGADETALNNAGKTPAGLLDEHDNENDRTTCSEAEINRVRMLLARAPADRAWRRRCWLVMLRSFARTAKATTDETGDAHEGSNDAG 449          
BLAST of mRNA_L-elsbetiae_contig5119.13183.1 vs. uniprot
Match: A0A6H5JRY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY1_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.890e-19
Identity = 48/74 (64.86%), Postives = 56/74 (75.68%), Query Frame = 1
Query:    1 MLLRWGADETSLDNDGDSPEDLFDRVHEDR---TCSEADIERVRLLLARAPADRAWRRRGWLAMLRSRASRANA 213
            +LLRWGADET+LDND  +P DL D    +    TCSEA+IE+VRLL+ARAPA+RAWRRR WL MLRS A  A A
Sbjct:  278 LLLRWGADETALDNDSKTPADLLDEDDNENDRTTCSEAEIEQVRLLMARAPANRAWRRRCWLVMLRSYAKTARA 351          
BLAST of mRNA_L-elsbetiae_contig5119.13183.1 vs. uniprot
Match: D8LRZ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ8_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 5.120e-17
Identity = 52/89 (58.43%), Postives = 64/89 (71.91%), Query Frame = 1
Query:    1 MLLRWGADETSLDNDGDSPED-LFDRVHED-RTCSEADIERVRLLLARAPADRAWRRRGWLAMLRSRASRANAIAG--GEGAEESNDAG 255
            +LL+WGADET++ NDG++P D L +  +E+  TCS A+I RVRLLLARAPA+RAWRRR WL MLRS A  A A     G+  E SND G
Sbjct:  301 LLLQWGADETAVHNDGNTPADWLVENNNENGTTCSTAEIGRVRLLLARAPANRAWRRRCWLVMLRSCAKTARATTDKTGDADEGSNDVG 389          
BLAST of mRNA_L-elsbetiae_contig5119.13183.1 vs. uniprot
Match: D8LNI8_ECTSI (EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI8_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 6.750e-16
Identity = 43/73 (58.90%), Postives = 52/73 (71.23%), Query Frame = 1
Query:    1 MLLRWGADETSLDNDGDSPEDL----FDRVHEDRTCSEADIERVRLLLARAPADRAWRRRGWLAMLRSRASRA 207
            MLLRWGADET+L+  G SP D     + +V       + +I+R RLLL+RAPADRAWRRRGWL MLRSR S+A
Sbjct:   39 MLLRWGADETTLNYGGASPADFLGGRYGKVIGHNPAPQDEIDRTRLLLSRAPADRAWRRRGWLVMLRSRDSKA 111          
BLAST of mRNA_L-elsbetiae_contig5119.13183.1 vs. uniprot
Match: D7G316_ECTSI (Inversin protein alternative isoform n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G316_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.190e-14
Identity = 42/69 (60.87%), Postives = 48/69 (69.57%), Query Frame = 1
Query:    1 MLLRWGADETSLDNDGDSPEDLFDRVHEDRTCSEADIERVRLLLARAPADRAWRRRGWLAMLRSRASRA 207
            +LL+WGADET+LD DG +P DL D        S    E VRLLLARAPADRAWRRRGWL M+ SR  +A
Sbjct:  590 LLLQWGADETALDRDGKTPADLIDE-------SRPQHEAVRLLLARAPADRAWRRRGWLVMVFSRTPKA 651          
BLAST of mRNA_L-elsbetiae_contig5119.13183.1 vs. uniprot
Match: D8LRS0_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRS0_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.240e-12
Identity = 46/90 (51.11%), Postives = 57/90 (63.33%), Query Frame = 1
Query:    1 MLLRWGADETSLDNDGDSPEDLFDRVHEDR----TCSEADIERVRLLLARAPADRAWRRRGWLAMLRS--RASRANAIAGGEGAEESNDA 252
            +LLR             +P D+ D  H+D     TCSEA+ ERVRLLLARAPA+RAWR R WL MLRS  + +RAN+ A G+  E+SNDA
Sbjct:  299 LLLRXXXXXXXXXXXXQTPVDMLDE-HDDENDGTTCSEAEFERVRLLLARAPANRAWRHRCWLVMLRSCAKTARANSDATGDADEDSNDA 387          
BLAST of mRNA_L-elsbetiae_contig5119.13183.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 4.290e-12
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    1 MLLRWGADETSLDNDGDSPEDLFDRVHE---DRTCSEADIERVRLLLARAPADRAWRRRGWLAMLRSRASRANAIAGGEGAEES 243
            +LLRWGADE   +NDGD+P D+   + +   D    EAD +R+  +LARAPADR+WRRRGWL + RS  +R + IA G  +  S
Sbjct:  372 LLLRWGADEKLPNNDGDTPADVVGVLEQNDLDDEEREADNQRIHRMLARAPADRSWRRRGWLVLSRSCPTRVH-IANGSSSSSS 454          
BLAST of mRNA_L-elsbetiae_contig5119.13183.1 vs. uniprot
Match: D8LP48_ECTSI (EsV-1-8 n=2 Tax=root TaxID=1 RepID=D8LP48_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 5.780e-12
Identity = 41/76 (53.95%), Postives = 46/76 (60.53%), Query Frame = 1
Query:    1 MLLRWGADETSLDNDGDSPEDLFDRVHEDRTCSEADIERVRLLLARAPADRAWRRRGWLAMLRSRASRANAIAGGE 228
            +LLRWGADET  D  G +P D   R+   R    A  ERVR LL  AP DRAWRRRGWL MLR     A+ +A GE
Sbjct:  365 LLLRWGADETMKDERGKTPADYLGRI---RNLDPAVAERVRHLLVNAPKDRAWRRRGWLVMLR-----AHTLAAGE 432          
BLAST of mRNA_L-elsbetiae_contig5119.13183.1 vs. uniprot
Match: D8LB27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 5.850e-12
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 1
Query:    1 MLLRWGADETSLDNDGDSPEDL---FDRVHEDRTCSEADIERVRLLLARAPADRAWRRRGWLAMLRS 192
            +LLRWGADET  +++GD P D+   +DR   +    +AD +R+R +LARAPADR+WRRRGWL + RS
Sbjct:  369 LLLRWGADETCSNDNGDVPADVIGVYDRGDVNDEDVKADHKRIRRMLARAPADRSWRRRGWLVLSRS 435          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5119.13183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWW4_9PHAE3.420e-2062.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS36_ECTSI2.510e-1958.89Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JRY1_9PHAE2.890e-1964.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRZ8_ECTSI5.120e-1758.43Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LNI8_ECTSI6.750e-1658.90EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G316_ECTSI1.190e-1460.87Inversin protein alternative isoform n=1 Tax=Ectoc... [more]
D8LRS0_ECTSI2.240e-1251.11Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LQN0_ECTSI4.290e-1248.81Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
D8LP48_ECTSI5.780e-1253.95EsV-1-8 n=2 Tax=root TaxID=1 RepID=D8LP48_ECTSI[more]
D8LB27_ECTSI5.850e-1253.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5119contigL-elsbetiae_contig5119:7370..7660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue7.2e-17
Seed eggNOG ortholog2880.D8LS36
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size293
Cds size291
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816522.580706-CDS-L-elsbetiae_contig5119:7369..76601622816522.580706-CDS-L-elsbetiae_contig5119:7369..7660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5119 7370..7660 +
1691683620.800534-CDS-L-elsbetiae_contig5119:7369..76601691683620.800534-CDS-L-elsbetiae_contig5119:7369..7660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5119 7370..7660 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5119.13183.1prot_L-elsbetiae_contig5119.13183.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5119 7370..7660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5119.13183.1

>prot_L-elsbetiae_contig5119.13183.1 ID=prot_L-elsbetiae_contig5119.13183.1|Name=mRNA_L-elsbetiae_contig5119.13183.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=97bp
MLLRWGADETSLDNDGDSPEDLFDRVHEDRTCSEADIERVRLLLARAPAD
RAWRRRGWLAMLRSRASRANAIAGGEGAEESNDAGGGVGESRKVARA
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mRNA from alignment at L-elsbetiae_contig5119:7370..7660+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5119.13183.1 ID=mRNA_L-elsbetiae_contig5119.13183.1|Name=mRNA_L-elsbetiae_contig5119.13183.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=291bp|location=Sequence derived from alignment at L-elsbetiae_contig5119:7370..7660+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCTGAGATGGGGTGCGGATGAGACGTCCTTAGACAACGATGGCGA TTCTCCGGAAGATCTGTTCGACAGAGTGCACGAGGACCGCACGTGTTCGG AGGCCGACATCGAGCGCGTGCGGCTACTGCTGGCTCGGGCTCCGGCTGAT CGGGCGTGGCGTCGCCGGGGCTGGCTAGCCATGCTTCGTTCACGCGCTTC GAGGGCTAACGCCATCGCTGGCGGTGAAGGGGCGGAGGAATCGAACGATG CTGGCGGTGGAGTAGGAGAAAGCCGCAAGGTGGCGAGGGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5119:7370..7660+

>mRNA_L-elsbetiae_contig5119.13183.1 ID=mRNA_L-elsbetiae_contig5119.13183.1|Name=mRNA_L-elsbetiae_contig5119.13183.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig5119:7370..7660+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCTGAGATGGGGTGCGGATGAGACGTCCTTAGACAACGATGGCGA
TTCTCCGGAAGATCTGTTCGACAGAGTGCACGAGGACCGCACGTGTTCGG
AGGCCGACATCGAGCGCGTGCGGCTACTGCTGGCTCGGGCTCCGGCTGAT
CGGGCGTGGCGTCGCCGGGGCTGGCTAGCCATGCTTCGTTCACGCGCTTC
GAGGGCTAACGCCATCGCTGGCGGTGAAGGGGCGGAGGAATCGAACGATG
CTGGCGGTGGAGTAGGAGAAAGCCGCAAGGTGGCGAGGGCTATGCTGCTG
AGATGGGGTGCGGATGAGACGTCCTTAGACAACGATGGCGATTCTCCGGA
AGATCTGTTCGACAGAGTGCACGAGGACCGCACGTGTTCGGAGGCCGACA
TCGAGCGCGTGCGGCTACTGCTGGCTCGGGCTCCGGCTGATCGGGCGTGG
CGTCGCCGGGGCTGGCTAGCCATGCTTCGTTCACGCGCTTCGAGGGCTAA
CGCCATCGCTGGCGGTGAAGGGGCGGAGGAATCGAACGATGCTGGCGGTG
GAGTAGGAGAAAGCCGCAAGGTGGCGAGGGCT
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