mRNA_L-elsbetiae_contig5118.13180.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5118.13180.1
Unique NamemRNA_L-elsbetiae_contig5118.13180.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5118.13180.1 vs. uniprot
Match: D7FNM1_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNM1_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 2.010e-36
Identity = 74/108 (68.52%), Postives = 81/108 (75.00%), Query Frame = 3 
Query:   12 SNDHVGLIRVLWLQEKESRLASEAKAEAVRDQSARLWNELVRSEKQVLSLEEGIASLREERDRLRDTLSGTGFKGRSLPELEQLEKDLRKALDGVCGERDRIVQEQLA 335
            S+DHVGLIR LWLQEKESRLASEAK                     VLSLEEG A+LREERD+L+ TL+G GFKGRSL ELE LEKDLRKAL+GVCGERDRIVQ+QLA
Sbjct:   48 SSDHVGLIRALWLQEKESRLASEAK---------------------VLSLEEGAAALREERDKLKATLNGEGFKGRSLQELEHLEKDLRKALEGVCGERDRIVQQQLA 134
[Close]
BLAST of mRNA_L-elsbetiae_contig5118.13180.1 vs. uniprot
Match: A0A7S2G914_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G914_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.490e-11
Identity = 48/117 (41.03%), Postives = 65/117 (55.56%), Query Frame = 3 
Query:   12 SNDHVGLIRVLWLQEKESRLASEAKAEAVRDQSARLWNELVRSEKQVLSLEEGIASLREERDRLRDT-------------LSGTGFKGRSLPELEQLEKDLRKALDGVCGERDRIVQ 323
            S +   ++R LW +E+  R A+EAK +AVRDQSARLW EL+ ++      EE    LR ERDRL +              L G   KG S+P L+ LE  LR +L  V  ER+R++Q
Sbjct:   29 SEERTKVLRKLWRKEQTLREAAEAKVQAVRDQSARLWTELMETQ----CSEE---KLRVERDRLTEDAARARGLEQEVRQLRGEDIKGLSMPSLDALEVTLRTSLGAVGRERERLLQ 138
[Close]
BLAST of mRNA_L-elsbetiae_contig5118.13180.1 vs. uniprot
Match: A0A7S2C4Y0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C4Y0_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.740e-5
Identity = 32/110 (29.09%), Postives = 66/110 (60.00%), Query Frame = 3 
Query:    9 ASNDHVGLIRVLWLQEKESRLASEAKAEAVRDQSARLWNELVRSEKQVLSLEEGIASLREERDRLRDTLS---GTGFKGRSLPELEQLEKDLRKALDGVCGERDRIVQEQ 329
            +  + +  +R L+ QE+  +  +++KA A+R+QS++LW +L+ S+       +    LR ERDRL+  L    G   KG S+  LE+LE ++++ +  +  +++++++EQ
Sbjct:   20 SKEEQLETLRQLFRQEQADKETAQSKALAMREQSSKLWTDLMESQ-------QTEKKLRIERDRLKIELRRHRGEDLKGMSVGALEELEGEIKEGVARIHKQKEKVLREQ 122
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5118.13180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FNM1_ECTSI2.010e-3668.52RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S2G914_9STRA2.490e-1141.03Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2C4Y0_9STRA1.740e-529.09Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5118contigL-elsbetiae_contig5118:6220..8285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size337
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5118.13180.1prot_L-elsbetiae_contig5118.13180.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5118 6221..8285 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816522.1892514-UTR-L-elsbetiae_contig5118:6219..62201622816522.1892514-UTR-L-elsbetiae_contig5118:6219..6220Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5118 6220..6220 +
1691683620.5268586-UTR-L-elsbetiae_contig5118:6219..62201691683620.5268586-UTR-L-elsbetiae_contig5118:6219..6220Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5118 6220..6220 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816522.2075918-CDS-L-elsbetiae_contig5118:6220..62421622816522.2075918-CDS-L-elsbetiae_contig5118:6220..6242Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5118 6221..6242 +
1691683620.5371637-CDS-L-elsbetiae_contig5118:6220..62421691683620.5371637-CDS-L-elsbetiae_contig5118:6220..6242Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5118 6221..6242 +
1622816522.2184408-CDS-L-elsbetiae_contig5118:6637..67001622816522.2184408-CDS-L-elsbetiae_contig5118:6637..6700Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5118 6638..6700 +
1691683620.5468864-CDS-L-elsbetiae_contig5118:6637..67001691683620.5468864-CDS-L-elsbetiae_contig5118:6637..6700Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5118 6638..6700 +
1622816522.2303233-CDS-L-elsbetiae_contig5118:7414..74771622816522.2303233-CDS-L-elsbetiae_contig5118:7414..7477Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5118 7415..7477 +
1691683620.5572386-CDS-L-elsbetiae_contig5118:7414..74771691683620.5572386-CDS-L-elsbetiae_contig5118:7414..7477Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5118 7415..7477 +
1622816522.2413695-CDS-L-elsbetiae_contig5118:7734..78181622816522.2413695-CDS-L-elsbetiae_contig5118:7734..7818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5118 7735..7818 +
1691683620.5671153-CDS-L-elsbetiae_contig5118:7734..78181691683620.5671153-CDS-L-elsbetiae_contig5118:7734..7818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5118 7735..7818 +
1622816522.2558463-CDS-L-elsbetiae_contig5118:8181..82851622816522.2558463-CDS-L-elsbetiae_contig5118:8181..8285Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5118 8182..8285 +
1691683620.5773776-CDS-L-elsbetiae_contig5118:8181..82851691683620.5773776-CDS-L-elsbetiae_contig5118:8181..8285Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5118 8182..8285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5118.13180.1

>prot_L-elsbetiae_contig5118.13180.1 ID=prot_L-elsbetiae_contig5118.13180.1|Name=mRNA_L-elsbetiae_contig5118.13180.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MPRVKRSRWTDQGAMVAREREQTSLRSKGRSRPGSERPPVERACPKREAG
AEPRRGDSFPSRGKGQAERHPEWHRVQGPILARAGTTGKRPPESVGWGLR
REGQDRPGTAG*
back to top

mRNA from alignment at L-elsbetiae_contig5118:6220..8285+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5118.13180.1 ID=mRNA_L-elsbetiae_contig5118.13180.1|Name=mRNA_L-elsbetiae_contig5118.13180.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2066bp|location=Sequence derived from alignment at L-elsbetiae_contig5118:6220..8285+ (Laminarionema elsbetiae ELsaHSoW15)
GATGCCACGCGTCAAACGATCACGTATGTTAAATTGACGGGTTTTATCGC
TGGCCTCTGGCTTAGCAAACACAGCAATCACGCCTGGTTTCACGCACTGT
CGTACCAGCTCCTCGAACCATCAACACCTTCTTCGCGTTTCGCAAGAGTT
TGGTGGATGCGTCGCCCAGTAAAGTAGATTGTTTGACACACAGACAGTGT
CTGAGGCACATACATATCTAATTGGGCATTTTCTTCAAGAAGATCCCGGA
ACCGTGAGTGACTTATTCCAAGTGGAACCGTTTTATGTATCCCTGTGCCC
ACCAATAAAGGATGCTTGGCGACGCTCCAATTCCGTTGGTTCCAACCTAG
TGCGCTGTTCTCATTGCCATCTTCTACCTGCTATGTATATATGTCGCTCG
CTTTCCGATGACGGACAGGTTGGACTGATCAGGGTGCTATGGTTGCAAGA
GAAAGAGAGCAGACTAGCCTCCGAAGCAAAGGTGGGCCTTTCATTTCCCA
TGGACACCCCAGTCGTACCCATGCCATTGATGGAAGCACCATTTCACAGA
GTGGGAGGTATCGTTTATCCTCTGGCTATTGTGTCCCCGTCGGCCGCCCG
CGAAGGAGGTCATTCCGCGTGAAAGTCGATTCAAACCCAGCACGCCGCTC
TCAGGACATAACACGTGGTGGTGGTACATTTTTTGTGTATCTGCTTCAAT
TTTTGCCTGCATAGCTTCAGACGGGATGGCGATAGTATTCTTGCTGCACA
AAATCATGATATGTCGCAGGCGAACGAGAAATGGGTGGGTATTAATTATT
TGCCCAATATACTGACGTATTGGACTGTCTCATTGCCGAACAAGATATTC
CTAATGCTTGACCCGTGCACCTTGCTGGGACCTGTTTTGGCCACGTTCAA
CCCTCTGGAACGAAGCATCAATATGTAACAGTCCATAAGCGGCATGTTGA
GACTCAACGATACCACCACGCACGATGGCCTTACACCATGGCCCATCCAC
CCGCTGCAGTGTTTCTCGGCGGCCATACGCTCCGCCATCCCTCTTCTGAC
CTCCCTCTCTCGATCTCAAATGCGTAAATGTCAAGAACGTTCACACTCTT
CGACCTACCTCTACCGCCGTGCTCCGGCGAATAGTTCCCCACCTCGGTCG
GCCCATGTTTTCCCCTTATGCTCTGTTCTGTTGCTCCCTCTTCAGGCCGA
AGCCGTCCGGGATCAGAGCGCCCGCCTGTGGAACGAGCTTGTCCGAAGCG
AGAAGCAGGTACGAGTCTCACATCATCGGTAGATGCCCCACTCTTGTTTA
CCGTTGTAGATATCAACGTTAATCGCCGCAACAAACGGCGGCGGGAGTGG
GAGGTGGCTGGTCTATGGCCGCGCCCACCCAGATCAAACGTATATAAGTG
TCCTCTGACTTTTACGTGGAGTGTCGCCGACGAACGCCTACGGGCAGCGC
AACAAACGCCACGTTAGGGTTGTCATGGATACTGAGTCTCCCGATCTGGA
CGGATACGACCGCAGGTGCTGAGCCTAGAAGAGGGGATAGCTTCCCTTCG
CGAGGAAAGGGACAGGCTGAGAGACACCCTGAGTGGCACCGGGTTCAAGG
TGACAGTAAAGATCTTTGGTTACATACCTTTAGGCAGAATGGAAGACCGA
GACCGACGAGATCTGGCGAAGCGGGCCACAGATGGTTAACTGTGTAGTTT
CGTGAAATACCTGCCAACTGGTAAGTCTAGATACTGTGTGTGTGGGAAAA
TCTTTTCCGAGCAGCCCTGCTTCGGCCAATATCATAGCGCCGTCTGCACG
TAACCTTACGAAGAAGGCAAAATATCTCCTCCAGCACCGTCTTCAAGTGT
AATTGATGACGCCAAAATACCGTATAGCTATGTAGTACATCGACAAAGCC
TTAAGGAATATCGTCGGCTTTACAAGAGTATCTTGGTGTCTACTCAAACG
ATATCAAAACAGGGCCGATCCTTGCCAGAGCTGGAACAACTGGAAAAAGA
CCTCCGGAAAGCGTTGGATGGGGTTTGCGGAGAGAGGGACAGGATCGTCC
AGGAACAGCTGGCTAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5118:6220..8285+

>mRNA_L-elsbetiae_contig5118.13180.1 ID=mRNA_L-elsbetiae_contig5118.13180.1|Name=mRNA_L-elsbetiae_contig5118.13180.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig5118:6220..8285+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCACGCGTCAAACGATCACATGCCACGCGTCAAACGATCACGTTGGA
CTGATCAGGGTGCTATGGTTGCAAGAGAAAGAGAGCAGACTAGCCTCCGA
AGCAAAGGTTGGACTGATCAGGGTGCTATGGTTGCAAGAGAAAGAGAGCA
GACTAGCCTCCGAAGCAAAGGCCGAAGCCGTCCGGGATCAGAGCGCCCGC
CTGTGGAACGAGCTTGTCCGAAGCGAGAAGCAGGCCGAAGCCGTCCGGGA
TCAGAGCGCCCGCCTGTGGAACGAGCTTGTCCGAAGCGAGAAGCAGGTGC
TGAGCCTAGAAGAGGGGATAGCTTCCCTTCGCGAGGAAAGGGACAGGCTG
AGAGACACCCTGAGTGGCACCGGGTTCAAGGTGCTGAGCCTAGAAGAGGG
GATAGCTTCCCTTCGCGAGGAAAGGGACAGGCTGAGAGACACCCTGAGTG
GCACCGGGTTCAAGGGCCGATCCTTGCCAGAGCTGGAACAACTGGAAAAA
GACCTCCGGAAAGCGTTGGATGGGGTTTGCGGAGAGAGGGACAGGATCGT
CCAGGAACAGCTGGCTAAGGCCGATCCTTGCCAGAGCTGGAACAACTGGA
AAAAGACCTCCGGAAAGCGTTGGATGGGGTTTGCGGAGAGAGGGACAGGA
TCGTCCAGGAACAGCTGGCTAA
back to top