mRNA_L-elsbetiae_contig5118.13179.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5118.13179.1
Unique NamemRNA_L-elsbetiae_contig5118.13179.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5118.13179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5118contigL-elsbetiae_contig5118:5637..6161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size527
Cds size525
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816522.285564-CDS-L-elsbetiae_contig5118:5636..61611622816522.285564-CDS-L-elsbetiae_contig5118:5636..6161Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5118 5637..6161 +
1691683620.5879486-CDS-L-elsbetiae_contig5118:5636..61611691683620.5879486-CDS-L-elsbetiae_contig5118:5636..6161Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5118 5637..6161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5118.13179.1prot_L-elsbetiae_contig5118.13179.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5118 5637..6161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5118.13179.1

>prot_L-elsbetiae_contig5118.13179.1 ID=prot_L-elsbetiae_contig5118.13179.1|Name=mRNA_L-elsbetiae_contig5118.13179.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=175bp
DTLVSASSQSPRHSYDFARTTTSSWNAGGDGGGGHGAITGTSSSSSSSNS
SSSSSSSNNDNSDRSGDRGTSNGHSTRRRRHSDIGAGGEGNQSGASATTT
TTATTTTITTPPYTQTATPAGTTTAARRLDGHAFAAVGLGEGHEQQWVGA
GIGPTTAAPAATAPVLRSRISAPAR
back to top

mRNA from alignment at L-elsbetiae_contig5118:5637..6161+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5118.13179.1 ID=mRNA_L-elsbetiae_contig5118.13179.1|Name=mRNA_L-elsbetiae_contig5118.13179.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=525bp|location=Sequence derived from alignment at L-elsbetiae_contig5118:5637..6161+ (Laminarionema elsbetiae ELsaHSoW15)
GACACACTAGTATCAGCATCATCACAGTCACCTCGACATTCTTACGATTT
CGCGAGGACCACCACCTCTTCCTGGAATGCCGGTGGCGACGGAGGTGGTG
GACACGGTGCTATTACTGGTACCAGCAGTAGCAGCAGCAGCAGCAATAGC
AGCAGCAGCAGCAGTAGCAGCAATAACGACAACAGCGACAGGAGCGGCGA
TCGAGGTACTAGCAACGGGCACAGCACCCGGAGGCGCCGTCACAGTGATA
TCGGCGCCGGTGGAGAAGGAAACCAGTCGGGCGCATCAGCAACAACAACA
ACAACAGCAACAACAACGACCATAACAACACCACCCTACACTCAAACGGC
AACACCAGCGGGCACCACCACTGCAGCAAGGAGACTCGATGGCCATGCTT
TTGCCGCGGTCGGACTAGGAGAGGGGCACGAGCAGCAGTGGGTGGGAGCA
GGAATAGGGCCTACTACCGCCGCCCCCGCCGCCACTGCACCCGTCCTGAG
ATCGAGGATCTCCGCTCCTGCCCGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5118:5637..6161+

>mRNA_L-elsbetiae_contig5118.13179.1 ID=mRNA_L-elsbetiae_contig5118.13179.1|Name=mRNA_L-elsbetiae_contig5118.13179.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1050bp|location=Sequence derived from alignment at L-elsbetiae_contig5118:5637..6161+ (Laminarionema elsbetiae ELsaHSoW15)
GACACACTAGTATCAGCATCATCACAGTCACCTCGACATTCTTACGATTT
CGCGAGGACCACCACCTCTTCCTGGAATGCCGGTGGCGACGGAGGTGGTG
GACACGGTGCTATTACTGGTACCAGCAGTAGCAGCAGCAGCAGCAATAGC
AGCAGCAGCAGCAGTAGCAGCAATAACGACAACAGCGACAGGAGCGGCGA
TCGAGGTACTAGCAACGGGCACAGCACCCGGAGGCGCCGTCACAGTGATA
TCGGCGCCGGTGGAGAAGGAAACCAGTCGGGCGCATCAGCAACAACAACA
ACAACAGCAACAACAACGACCATAACAACACCACCCTACACTCAAACGGC
AACACCAGCGGGCACCACCACTGCAGCAAGGAGACTCGATGGCCATGCTT
TTGCCGCGGTCGGACTAGGAGAGGGGCACGAGCAGCAGTGGGTGGGAGCA
GGAATAGGGCCTACTACCGCCGCCCCCGCCGCCACTGCACCCGTCCTGAG
ATCGAGGATCTCCGCTCCTGCCCGGGACACACTAGTATCAGCATCATCAC
AGTCACCTCGACATTCTTACGATTTCGCGAGGACCACCACCTCTTCCTGG
AATGCCGGTGGCGACGGAGGTGGTGGACACGGTGCTATTACTGGTACCAG
CAGTAGCAGCAGCAGCAGCAATAGCAGCAGCAGCAGCAGTAGCAGCAATA
ACGACAACAGCGACAGGAGCGGCGATCGAGGTACTAGCAACGGGCACAGC
ACCCGGAGGCGCCGTCACAGTGATATCGGCGCCGGTGGAGAAGGAAACCA
GTCGGGCGCATCAGCAACAACAACAACAACAGCAACAACAACGACCATAA
CAACACCACCCTACACTCAAACGGCAACACCAGCGGGCACCACCACTGCA
GCAAGGAGACTCGATGGCCATGCTTTTGCCGCGGTCGGACTAGGAGAGGG
GCACGAGCAGCAGTGGGTGGGAGCAGGAATAGGGCCTACTACCGCCGCCC
CCGCCGCCACTGCACCCGTCCTGAGATCGAGGATCTCCGCTCCTGCCCGG
back to top