mRNA_L-elsbetiae_contig5116.13177.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5116.13177.1
Unique NamemRNA_L-elsbetiae_contig5116.13177.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5116.13177.1 vs. uniprot
Match: D7FRH6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH6_ECTSI)

HSP 1 Score: 411 bits (1057), Expect = 2.930e-138
Identity = 199/276 (72.10%), Postives = 229/276 (82.97%), Query Frame = 2
Query:  293 LVPRICKRYEGYAAVADNGEGKIVGVSFVDVHAKGSRVATLGPVSSIAPGAGKKTFVAACAHAEKLGFSTLILMQIAGNSRSFSLYAKLGFEAKHTCQYVGGFLASSDHXXXXXXXXXXXXXXXGVSLKSMVAEDIAECADLFLTAHGRGCGWDRRADITGALKSGIPFPMLVARDADGKVAGYTTGFFIIGHTVATTQDVFCAMFTESSRLHQQRGLPCPRFHCPVEFTELLSWSLAQQGLKIFRASVIMARGHYEHTPWTND-GYTVAPSINGY 1117
            ++  ICK +E YA VAD G GKIVGVSFVDVHAKGSRVA LGPVSSIAPGAGKK+FVAACA+AE+LGFSTL+LMQIA NSRSFSLYAKLGFE KHTCQY+GGFL                    GV+LK+MVA D+ ECA++FL AHG+GCGWDRRADITG L+SG PFPMLVARDADGKV GYTTGF+++GHTVA +QD+FC MF ESS+LHQQ GLPCPRFHCPVEFT LLSW+LAQ+GL+IFRA+++MARGHYEHTPW +  G  VAPS +G+
Sbjct:   57 IIQSICKSHEAYAVVADGGAGKIVGVSFVDVHAKGSRVACLGPVSSIAPGAGKKSFVAACAYAEELGFSTLVLMQIAANSRSFSLYAKLGFETKHTCQYMGGFLEPPSEGSLSPPPAPS-----GVTLKAMVAGDVEECAEMFLEAHGKGCGWDRRADITGCLESGAPFPMLVARDADGKVVGYTTGFYLMGHTVAKSQDIFCDMFRESSKLHQQAGLPCPRFHCPVEFTGLLSWALAQKGLRIFRATIVMARGHYEHTPWQDAIGNVVAPSASGH 327          
BLAST of mRNA_L-elsbetiae_contig5116.13177.1 vs. uniprot
Match: D7FVW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVW9_ECTSI)

HSP 1 Score: 399 bits (1024), Expect = 2.870e-133
Identity = 196/283 (69.26%), Postives = 225/283 (79.51%), Query Frame = 2
Query:  272 HRSVLSLLVPRICKRYEGYAAVADNGEGKIVGVSFVDVHAKGSRVATLGPVSSIAPGAGKKTFVAACAHAEKLGFSTLILMQIAGNSRSFSLYAKLGFEAKHTCQYVGGFLASSDHXXXXXXXXXXXXXXXGVSLKSMVAEDIAECADLFLTAHGRGCGWDRRADITGALKSGIPFPMLVARDADGKVAGYTTGFFIIGHTVATTQDVFCAMFTESSRLHQQRGLPCPRFHCPVEFTELLSWSLAQQGLKIFRASVIMARGHYEHTPWTND-GYTVAPSINGY 1117
            H ++   ++  ICK YEGYA V D G GKIVGVSFVDVHAKGS+VATLGPV+S+A GAGKK+FVAAC +AE+LGFSTLIL QIA NSRSFSLYAKLGFE KHT QY+GGFL                    GV+LK+MVA D+ ECA+LFL AHG+ CGWDRRADITG L SG PFPMLVARDA+GKV GY+TGFF+IGHTVA +QD+FC MF E S+LH+Q GLPCP+F+CPVEFT LLSW LAQ+GLK+FRAS+IMARGHYEHTPW N  G+ VAPS  GY
Sbjct:   50 HPAIGPTVIQSICKSYEGYAVVEDGGAGKIVGVSFVDVHAKGSKVATLGPVASLASGAGKKSFVAACDYAEELGFSTLILTQIAANSRSFSLYAKLGFETKHTVQYIGGFLEQPSEGSLPLPPAPS-----GVTLKAMVAGDVEECAELFLEAHGKDCGWDRRADITGCLGSGFPFPMLVARDANGKVVGYSTGFFMIGHTVAKSQDIFCYMFREGSKLHKQAGLPCPKFYCPVEFTGLLSWCLAQKGLKVFRASLIMARGHYEHTPWPNAAGHIVAPSTTGY 327          
BLAST of mRNA_L-elsbetiae_contig5116.13177.1 vs. uniprot
Match: D7FRH7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH7_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 1.250e-39
Identity = 77/102 (75.49%), Postives = 87/102 (85.29%), Query Frame = 2
Query:  293 LVPRICKRYEGYAAVADNGEGKIVGVSFVDVHAKGSRVATLGPVSSIAPGAGKKTFVAACAHAEKLGFSTLILMQIAGNSRSFSLYAKLGFEAKHTCQYVGG 598
            ++  ICK +E YA VAD G GKIVGVSFVDVHAKGSRVA LGPVSSIAPGAGKK+FVAACA+AE+LGFSTL+LMQIA NSRSFSLYAKLGFE + + +   G
Sbjct:   39 IIQSICKSHEAYAVVADGGAGKIVGVSFVDVHAKGSRVACLGPVSSIAPGAGKKSFVAACAYAEELGFSTLVLMQIAANSRSFSLYAKLGFEGQASLKVTTG 140          
BLAST of mRNA_L-elsbetiae_contig5116.13177.1 vs. uniprot
Match: A0A6H5K2U2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2U2_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 9.960e-35
Identity = 59/86 (68.60%), Postives = 73/86 (84.88%), Query Frame = 2
Query:  863 IGHTVATTQDVFCAMFTESSRLHQQRGLPCPRFHCPVEFTELLSWSLAQQGLKIFRASVIMARGHYEHTPWTND-GYTVAPSINGY 1117
            +GHTVA + D+ C MF ESS+LHQQ GLPCPRFHC VEFT LLSW+LAQ+GLKIFRA+++MARGHYEHTPW +  G+ +AP+ +GY
Sbjct:    1 MGHTVAKSHDIICDMFRESSKLHQQAGLPCPRFHCRVEFTGLLSWALAQRGLKIFRATILMARGHYEHTPWQDTIGHLMAPTASGY 86          
BLAST of mRNA_L-elsbetiae_contig5116.13177.1 vs. uniprot
Match: A0A6H5KFB4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB4_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 1.050e-34
Identity = 101/264 (38.26%), Postives = 113/264 (42.80%), Query Frame = 2
Query:  329 AAVADNGEGKIVGVSFVDVHAKGSRVATLGPVSSIAPGAGKKTFVAACAHAEKLGFSTLILMQIAGNSRSFSLYAKLGFEAKHTCQYVGGFLASSDHXXXXXXXXXXXXXXXGVSLKSMVAEDIAECADLFLTAHGRGCGWDRRADITGALKSGIPFPMLVARDADGKVAGYTTGFFIIGHTVATTQDVFCAMFTESSRLHQQRGLPCPRFHCPVEFTELLSWSLAQQGLKIFRASVIMARGHYEHTPWTN-DGYTVAPSINGY 1117
            A V D G GKIVGVSFVDVHAKGSRVATLGPV+S+A GAGK +FVAACA+AE+LGFSTL     AG  RS                                                                                               DGKV GY+TG                                  RF+CPVEFT LLSW LAQ+GLK+FRAS+IMARGH+EHTPW N  G+ VAPS  GY
Sbjct:   78 APVEDGGAGKIVGVSFVDVHAKGSRVATLGPVASLASGAGKNSFVAACAYAEELGFSTL-----AGGPRS-----------------------------------------------------------------------------------------------DGKVVGYSTGTI--------------------------------RFYCPVEFTGLLSWCLAQKGLKVFRASLIMARGHFEHTPWPNATGHIVAPSTTGY 209          
BLAST of mRNA_L-elsbetiae_contig5116.13177.1 vs. uniprot
Match: A9P0X9_PICSI (N-acetyltransferase domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9P0X9_PICSI)

HSP 1 Score: 79.3 bits (194), Expect = 1.040e-12
Identity = 71/239 (29.71%), Postives = 111/239 (46.44%), Query Frame = 2
Query:  341 DNGEGKIVGVSFVDVHAKGSRVATLGPVSSIAP-----GAGKKTFVAACAHAEKLGFSTLILMQIAGNSRSFSLYAKLGFEAKHTCQYVGGFLASSDHXXXXXXXXXXXXXXXGVSLKSMVAEDIAECADLFLTAHGRGCGWDRRADITGALKSGIPFPMLVARDADGKVAGYTTGFFIIGHTVATTQDVFCAMFTESSRLHQQRGLPCPRFHCPVEFTE-LLSWSLAQQGLKIFRASV 1039
            DN  G  +G +F++    G  V  +GPV  + P     GAGK    A    A+    +++ L+QIA N++SFSLYAKLGF+      Y  G +  + H               G  +K M   D+  C++L    H    G +R  DI   L++      +  +D    +  YTTGF + GH++A ++D F  +F     L ++RG      H P      L+ W+L ++GL++ R  V
Sbjct:   69 DNASGLPIGAAFLNFT--GESVQAVGPVF-VDPDWNNKGAGKALMNALIERAKATNATSIRLVQIAANTQSFSLYAKLGFQPVECISYFEGSMDENLHSGASFIP--------GFKVKMMEESDVHACSEL----HKSVLGHERETDIRELLQTNPGNSWVAVKD--DILQAYTTGFCLEGHSIAISEDAFKTLFEVV--LCEKRGCSMT-IHIPGRIHPFLIDWAL-KRGLRLVRLRV 286          
BLAST of mRNA_L-elsbetiae_contig5116.13177.1 vs. uniprot
Match: A0A2K1JT89_PHYPA (N-acetyltransferase domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JT89_PHYPA)

HSP 1 Score: 79.7 bits (195), Expect = 1.150e-12
Identity = 85/299 (28.43%), Postives = 127/299 (42.47%), Query Frame = 2
Query:  260 GLPQHRSVLSLLVPRICKRYEG--------YAAVADNGEGKIVGVSFVDVHAKGSRVAT-LGPV----SSIAPGAGKKTFVAACAHAEKLGFSTLILMQIAGNSRSFSLYAKLGFEAKHTCQYVGGFLASSDHXXXXXXXXXXXXXXXGVSLKSMVAEDIAECADLFLTAHGRGCGWDRRADITGALKSGIPFPMLVARDADGK-VAGYTTGFFIIGHTVATTQDVFCAMFTESSRLHQQR--GLPCPRFHCPVEFTELLSWSLAQQGLKIFRASVIMARGHYEHTPWTNDGYTVAPSI 1108
            G+P   +V S   P +  R  G        Y  VA + EGK+VG   +  H  G   A  +GPV     +   G GK    A   HA+ L   ++ L   A N +SF LYA LGF      +    F  + +                 V  + M A DI  C D++     +  G+DR  +I   + S       VA   D   + GYTTG F++GHT+ +++  + A+ T + R +      L  P  + P     L+ W+LA + L + R +  M  G Y+     NDG+  +PSI
Sbjct:   39 GVPTSFNVAS---PEVASRMLGSFVSQPSCYKLVAIDSEGKVVGGVLIQ-HGSGDNSAHGVGPVFVSLDAADRGIGKTVTKAVVEHAQSLNAPSIRLNTSASNRKSFCLYASLGFMP---VECTTSFFGTVNPDDGVIAASALEISTEVVRTRKMEAADIKACGDMY----SKAMGYDREDEIRD-MHSKFSEKCWVATTKDNSTILGYTTGLFLLGHTMGSSEAAWVAVITRAIRENNGNVSSLTIPGAYYP----RLIKWALATK-LILTRHNWYMVIGMYQKP---NDGFFWSPSI 317          
BLAST of mRNA_L-elsbetiae_contig5116.13177.1 vs. uniprot
Match: A0A6H5K5T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5T0_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 3.260e-12
Identity = 39/55 (70.91%), Postives = 44/55 (80.00%), Query Frame = 2
Query:  293 LVPRICKRYEGYAAVADNGEGKIVGVSFVDVHAKGSRVATLGPVSSIAPGAGKKT 457
            ++  ICK +E YA VAD G GKIVGV FVDVHAKGS+ A LG VSSIAPGAGKK+
Sbjct:   39 MIQSICKSHEAYAVVADGGTGKIVGVPFVDVHAKGSKEACLGAVSSIAPGAGKKS 93          
BLAST of mRNA_L-elsbetiae_contig5116.13177.1 vs. uniprot
Match: UPI001F55A25F (GNAT family N-acetyltransferase n=2 Tax=Nostoc TaxID=1177 RepID=UPI001F55A25F)

HSP 1 Score: 75.5 bits (184), Expect = 3.450e-11
Identity = 68/250 (27.20%), Postives = 115/250 (46.00%), Query Frame = 2
Query:  326 YAAVADNGEGKIVGVSFVDVHAKGSRVATLGPVSSIAPGA-----GKKTFVAACAHAEKLGFSTLILMQIAGNSRSFSLYAKLGFEAKHTCQYVGGFLASSDHXXXXXXXXXXXXXXXGVSLKSMVAEDIAECADLFLTAHGRGCGWDRRADITGALKSGIPFPMLVARDADGKVAGYTTGFFIIGHTVATTQDVFCAMFTESSRLHQQRGLPCPRFHCPVEFTELLSWSLAQQGLKIFRASVIMARGHY 1060
            Y+ VA+  +G+++G +F+    +G  +A +GP +++ P A     G++        A +  ++ + L+Q A NSRS SLY KLGF+ +       G   S                  G S++ M   D+A C  L    HG     DR  ++  A+  G    MLV  + DG+V+GYT+     GH VA   +   A+   ++    + G     F+ P+   +L  W L   GL++ + + +M+ G Y
Sbjct:  105 YSVVAEASDGRVIGSNFLW---EGDTIAGVGP-TTVDPAAQNRSVGRRLMEDVLQRAREKRYAGVRLVQAAHNSRSLSLYTKLGFDVREPLANFEGKPLS--------------LTIPGRSVRLMTEADLAVCNQLCDRIHGH----DRAGELKAAIGRGTA--MLV--ECDGRVSGYTSEIGFFGHAVAENNEDLKALIA-AAPASAELG-----FYVPMRNADLFRWCL-NHGLRVTQTATLMSLGLY 321          
BLAST of mRNA_L-elsbetiae_contig5116.13177.1 vs. uniprot
Match: UPI001FA9DD6C (GNAT family N-acetyltransferase n=1 Tax=Streptomyces sp. 891-h TaxID=2720714 RepID=UPI001FA9DD6C)

HSP 1 Score: 67.4 bits (163), Expect = 6.100e-9
Identity = 65/250 (26.00%), Postives = 104/250 (41.60%), Query Frame = 2
Query:  326 YAAVADNGEGKIVGVSFVDVHAKGSRVATLGPVSSIAP-----GAGKKTFVAACAHAEKLGFSTLILMQIAGNSRSFSLYAKLGFEAKHTCQYVGGFLASSDHXXXXXXXXXXXXXXXGVSLKSMVAEDIAECADLFLTAHGRGCGWDRRADITGALKSGIPFPMLVARDADGKVAGYTTGFFIIGHTVATTQDVFCAMFTESSRLHQQRGLPCPRFHCPVEFTELLSWSLAQQGLKIFRASVIMARGHY 1060
            Y+ VA+  +G++VG +F+D     S V  +GP++ I P     G G++        A +     + LMQ   ++RSFSLYA +GFE + T   + G   S +                G +++     D+  C +L    HG    +DR  ++  +L  G    +    +  G++ GY T      H VA T     A+   +           P    P   + LL W LA  GLK+ +   +M  G Y
Sbjct:   16 YSVVAEL-DGRVVGSNFLDER---SSVVGVGPLT-IDPAVQNRGVGRRLMQDVLERATERAAPGIRLMQSGYHTRSFSLYASMGFEFRETVACMQGPAMSRE--------------VPGYTVREATEADLGRCDELCRQVHG----FDRGGEVADSLGQGTARVV----EHQGRITGYATDLAFFAHAVAETNPSLQALIASAP------SFGGPGILVPASNSALLQWGLAN-GLKVVQLLSLMTTGLY 231          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5116.13177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRH6_ECTSI2.930e-13872.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FVW9_ECTSI2.870e-13369.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRH7_ECTSI1.250e-3975.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2U2_9PHAE9.960e-3568.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFB4_9PHAE1.050e-3438.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A9P0X9_PICSI1.040e-1229.71N-acetyltransferase domain-containing protein n=1 ... [more]
A0A2K1JT89_PHYPA1.150e-1228.43N-acetyltransferase domain-containing protein n=1 ... [more]
A0A6H5K5T0_9PHAE3.260e-1270.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001F55A25F3.450e-1127.20GNAT family N-acetyltransferase n=2 Tax=Nostoc Tax... [more]
UPI001FA9DD6C6.100e-926.00GNAT family N-acetyltransferase n=1 Tax=Streptomyc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5116contigL-elsbetiae_contig5116:569..4322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score301.2
Seed ortholog evalue3.6e-79
Seed eggNOG ortholog2880.D7FRH6
Hectar predicted targeting categoryother localisation
EggNOG OGs2EA42@1,2SGDE@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1583
Cds size609
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5116.13177.1prot_L-elsbetiae_contig5116.13177.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5116 1567..3859 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816522.0652554-UTR-L-elsbetiae_contig5116:568..10731622816522.0652554-UTR-L-elsbetiae_contig5116:568..1073Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5116 569..1073 +
1691683620.445057-UTR-L-elsbetiae_contig5116:568..10731691683620.445057-UTR-L-elsbetiae_contig5116:568..1073Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5116 569..1073 +
1622816522.0772986-UTR-L-elsbetiae_contig5116:1560..15661622816522.0772986-UTR-L-elsbetiae_contig5116:1560..1566Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5116 1561..1566 +
1691683620.4561965-UTR-L-elsbetiae_contig5116:1560..15661691683620.4561965-UTR-L-elsbetiae_contig5116:1560..1566Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5116 1561..1566 +
1622816522.1515615-UTR-L-elsbetiae_contig5116:3859..43221622816522.1515615-UTR-L-elsbetiae_contig5116:3859..4322Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5116 3860..4322 +
1691683620.5170913-UTR-L-elsbetiae_contig5116:3859..43221691683620.5170913-UTR-L-elsbetiae_contig5116:3859..4322Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5116 3860..4322 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816522.0880115-CDS-L-elsbetiae_contig5116:1566..16231622816522.0880115-CDS-L-elsbetiae_contig5116:1566..1623Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5116 1567..1623 +
1691683620.465384-CDS-L-elsbetiae_contig5116:1566..16231691683620.465384-CDS-L-elsbetiae_contig5116:1566..1623Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5116 1567..1623 +
1622816522.0988126-CDS-L-elsbetiae_contig5116:2144..23801622816522.0988126-CDS-L-elsbetiae_contig5116:2144..2380Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5116 2145..2380 +
1691683620.4755003-CDS-L-elsbetiae_contig5116:2144..23801691683620.4755003-CDS-L-elsbetiae_contig5116:2144..2380Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5116 2145..2380 +
1622816522.1099331-CDS-L-elsbetiae_contig5116:2676..27231622816522.1099331-CDS-L-elsbetiae_contig5116:2676..2723Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5116 2677..2723 +
1691683620.4851213-CDS-L-elsbetiae_contig5116:2676..27231691683620.4851213-CDS-L-elsbetiae_contig5116:2676..2723Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5116 2677..2723 +
1622816522.1246262-CDS-L-elsbetiae_contig5116:3116..32221622816522.1246262-CDS-L-elsbetiae_contig5116:3116..3222Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5116 3117..3222 +
1691683620.4985445-CDS-L-elsbetiae_contig5116:3116..32221691683620.4985445-CDS-L-elsbetiae_contig5116:3116..3222Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5116 3117..3222 +
1622816522.1408925-CDS-L-elsbetiae_contig5116:3696..38591622816522.1408925-CDS-L-elsbetiae_contig5116:3696..3859Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5116 3697..3859 +
1691683620.508056-CDS-L-elsbetiae_contig5116:3696..38591691683620.508056-CDS-L-elsbetiae_contig5116:3696..3859Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5116 3697..3859 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5116.13177.1

>prot_L-elsbetiae_contig5116.13177.1 ID=prot_L-elsbetiae_contig5116.13177.1|Name=mRNA_L-elsbetiae_contig5116.13177.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=203bp
MQIAGNSRSFSLYAKLGFEAKHTCQYVGGFLASSDHPPPPPESDGGVSGG
GGVSLKSMVAEDIAECADLFLTAHGRGCGWDRRADITGALKSGIPFPMLV
ARDADGKVAGYTTGFFIIGHTVATTQDVFCAMFTESSRLHQQRGLPCPRF
HCPVEFTELLSWSLAQQGLKIFRASVIMARGHYEHTPWTNDGYTVAPSIN
GY*
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mRNA from alignment at L-elsbetiae_contig5116:569..4322+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5116.13177.1 ID=mRNA_L-elsbetiae_contig5116.13177.1|Name=mRNA_L-elsbetiae_contig5116.13177.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3754bp|location=Sequence derived from alignment at L-elsbetiae_contig5116:569..4322+ (Laminarionema elsbetiae ELsaHSoW15)
GGAATGAGCAGAGCGCCCCAGCCGTCATTAAAGGGTGGGTGCACAGTGTT CTCAGTTTTCTGATTGGCCAATTTTAATGACGGCTCCACAGTAGTAATAA TTCCCTTTGTTTTCTTCGTCAACTCTGCACGAAAGTCAACACAACAAGAA CGGTTGCACTGCTTATTGGTGACCACCCCGCTTAAGAATAAGAACCCGCG GTGTGCACGGGAAGTGTTACTCCAGGTCCTCCCTGCACCACGGCCAACAC AACAGCCCTGGCTTGCCACAGCATCGCTCGGTTCTTTCGCTGCTTGTGCC CAGGATCTGCAAGCGTTACGAAGGGTATGCCGCGGTCGCGGACAACGGGG AGGGCAAGATCGTCGGCGTCTCCTTCGTTGACGTGCACGCAAAGGGCTCG AGGGTGGCCACGCTGGGTCCGGTTTCGTCCATAGCTCCCGGTGCCGGCAA GAAAACGTTCGTGGCTGCTTGCGCCCATGCGGAGAAGCTGGGCTTCTCGA CCCTGGTGAGAGCGGGGTCACGGGAGAGGAGGGACGGTGGTGCCCTGCTG GCTCGACCTTGGGTCAGCCTCGACGAGTAGACAAAGCTTTCGCACCTGAC GCTACTTTTCCTGCCCTTCTTCTCTACGTTTTTGCTCAAGAAAGGGTATG TCGGAGAAGCGGAAACACAGCGACATAGGGCTGTAAGTATGGTGCCCGAT TCAGCCCCTTGCGTCGACATTGAAGCACCATCAGTTGTTCAAATGTATCC GGTCTTTCCTGTGGCCCCATCGCGGGCTCGTTGATGGTAGGCCAGCGTTT CCACTGGGTGATGCACGTTAATGAACGCCCCACTCGCCTCCTAGTCTACG CGTTTTCTCAATCATTTTCCTTTTGCTCGCTCGTGTCGTTTGTGGTTTGT CCCTCTCGCTCGCTGTCTACCTCTCTTCCTCTGTTTCTGTTTCCCCTTCC TGCCGGGTCTGGTGAAACGACATAACACGACACGAATGGCAGATCCTGAT GCAAATCGCGGGCAACTCACGCTCGTTCTCCCTCTACGCTAAGCTCGGCT TCGAGGTGAAGAAGTGCCATGGCAGCTCCAAGCGTTCATGTACATTGCCG CGCAATACCGCCATGGCACAGCCAAGCTATGCTGCTCGGCACCGAAACAC TGCTTGCCTCTTACAGCCATCTGCTAGGCTAAGTAATAGTAGTGGTTGGA AGCATCTGCAGATGCTCTGACCAAGTAACTGGTTGTGTAGCAGGAAACCT CAATCGCAATATTGTGACAACTAGGTGTAGCCTTACTTATGTCGCGCCGC GCCGGCTGCTTCCTTCCATTTCACCGGTGGCGCCGTGTCCTCTTTCGCTG GGGATTGTGCTCATGAAGCCTGTTTTCTGCCTCATCTCGTCCGAGAAGCT TGTTTGTCGCCCCCCAACAATTCGTAGCGTACACAGAAGCAGCGCCGGTG TCGCCGGCGGCAGGTCGTGTTCCCACGTATTTGCACATGTGTATTTGGCC AGTCAGCACCCTCTCCCCGCCCCGCCCCGCCCCGCATCCAACGTCACCAC GATGGCTGCCATTCTTTCTCCGCTAGGCGAAGCACACTTGCCAGTATGTG GGCGGGTTCCTGGCGTCATCAGATCACCCACCGCCACCCCCGGAGTCTGA CGGTGGCGTCAGCGGTGGCGGCGGGGTAAGCTTGAAGTCCATGGTCGCGG AAGACATCGCAGAGTGCGCGGACCTGTTCCTCACCGCGCACGGGCGGGGC TGCGGCTGGGACCGCCGGGCGGACATCACGGGGGCTTTGAAGTCCGGAAT CCCGTTCCCGATGTGAGGGTTGTGATTGTTCTGCTTGTTTTGTGTGGTCG GCACGCAGACTGCTGCTCCTGCTGTAAGAGCGAGGCAACCCAGACGGACG AGGCAGGAGAACGAGACTCTCAACAGGTGCTGCCGACTTGCGAGTGAATA TCATTGCTAAGTTGAACACCTCCCTCCCCTTGCCGCCTCGTCTTCCCTCC CTTCCCGGTCTCTGGCGTGCGACGTTGACGAACCTGGGCCGAAACGAACC CGAAAACTGCTGTCCCATGCCATCCGGCGAACGGGCTGGCATGAAAACAT GGACACAGGCTGGTGGCCCGAGATGCCGACGGCAAGGTGGCTGGCTACAC TACAGGTGGGCCACACCATCACGTATCAAGCACATTGAATAGACTACTGT TTCGAAGGGTACAGTCAGACCTATCTATGTGGCATGAAGTTGCTGAGATC TTGTGCGCAGTAGTGCTAAGACGGGGGATGTTTGGCGTGGCTCGGTGAAA AGAGCGGCTGGGCGGCACAGGAGCCAGCACCATAAGGAGGAGAGAAGCTG CGTACTGCTGTACCACTCTGGCGAACAACCCTGCCTGTTGAAACCTTAAT CTTCACCACTACCAACGAGGGCCGCCAAATTTCGTCTCACATATTAATGC ATACGTGCATGCTTTGTGCGTTAAATATCTTGATCGTGTGCGCTTCCTCC GGGTTGGGCGTGGGGTTGATGCATGGAAATCCCCCCTGCAACTATCAGGC TTCTTCATAATCGGACACACCGTGGCCACGACTCAGGACGTGTTTTGCGC CATGTTCACAGAGAGTTCGCGGCTGCACCAGCAGCGTGGACTGCCGTGCC CAAGGTAACGACAACACCTGACCCGAAATCAGCATTGTGTCTCGATTTGT TGTTCCCCGCGGTTATCAGCGTAACTTCTGTATTCATTTTGGTGTGACCA CGGAAGACGCCACTGCTACTGTCAGTCGGATAAGCACGCGGCTTGGAAGG TACGGAGCAGAGATCTGGACGGTTTCGAGCGTGAATACAAGGCAACCGTG CGTGTCCATGTCAAGTGCTTGGTTGGTCTTCTAGACGTGAGTGTTTTGCG TGTGGAGTTTGGGGCGTTAGCCACCGCCTCGTGGCCAAACACTTAAATCG CTCTCTAGCCATGCACATCCACATCCTCGTGCGACTCGTGGTAACGCCTC TACGAAGGAAGGTCTTGGTGCTCTTCACGCAAACAATTGTTTGGCCAGCC CACCCCTAGCTCCTCGCTAAAGTAATGATCATAACTCCTGGGTTGCAACG CCCCGTCTGATGCATTGGGTCCGCCCAGGTTCCACTGTCCGGTTGAGTTT ACAGAGCTGCTCTCGTGGTCGTTGGCACAGCAAGGATTGAAGATTTTCCG GGCAAGCGTCATTATGGCCAGGGGGCATTACGAGCACACCCCTTGGACAA ACGACGGCTACACCGTGGCTCCGAGTATCAATGGTTATTGAATACCCGTG AACACTGTAAAAGTGCGTGAAAACGCGCTGGCAGCACCGGACAGTATCTA GTATTTAGTGTTTGTGTTTGGGTATGTATATGTAGAACAGATACAGGACA CGATGCTGGGGCGAGGTGTGGAGGGTGTGTTCCTCGCATGGGAGATTGAC GTGCAGTTCTTCCTAGCCGCAGGTTTTGGGGTGATCACGTTTCGGTACCT ATAGACTAGTTTCGGCCTACATATGTGCATACATAACGTGTATGTAGCTC TCTTCCGGTTTTTTAGATCGCTACAATACATACGCATGAATACGCATGAA ATAGCTTCCCCAGAAAGTCTCACGAGGATTCATAATGTGGTTTGATTGGG TTTGCTGACAGGCAGTGCGCCTTCGAGAACTTCGGGCTGTAAATAGGCGA GATGACACGTATTGTGTTGTATTTTTGCGAGCGGGGTTGTTGCATTGGCG GCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5116:569..4322+

>mRNA_L-elsbetiae_contig5116.13177.1 ID=mRNA_L-elsbetiae_contig5116.13177.1|Name=mRNA_L-elsbetiae_contig5116.13177.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1218bp|location=Sequence derived from alignment at L-elsbetiae_contig5116:569..4322+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAAATCGCGGGCAACTCACGCTCGTTCTCCCTCTACGCTAAGCTCGG
CTTCGAGATGCAAATCGCGGGCAACTCACGCTCGTTCTCCCTCTACGCTA
AGCTCGGCTTCGAGGCGAAGCACACTTGCCAGTATGTGGGCGGGTTCCTG
GCGTCATCAGATCACCCACCGCCACCCCCGGAGTCTGACGGTGGCGTCAG
CGGTGGCGGCGGGGTAAGCTTGAAGTCCATGGTCGCGGAAGACATCGCAG
AGTGCGCGGACCTGTTCCTCACCGCGCACGGGCGGGGCTGCGGCTGGGAC
CGCCGGGCGGACATCACGGGGGCTTTGAAGTCCGGAATCCCGTTCCCGAT
GCGAAGCACACTTGCCAGTATGTGGGCGGGTTCCTGGCGTCATCAGATCA
CCCACCGCCACCCCCGGAGTCTGACGGTGGCGTCAGCGGTGGCGGCGGGG
TAAGCTTGAAGTCCATGGTCGCGGAAGACATCGCAGAGTGCGCGGACCTG
TTCCTCACCGCGCACGGGCGGGGCTGCGGCTGGGACCGCCGGGCGGACAT
CACGGGGGCTTTGAAGTCCGGAATCCCGTTCCCGATGCTGGTGGCCCGAG
ATGCCGACGGCAAGGTGGCTGGCTACACTACAGGCTGGTGGCCCGAGATG
CCGACGGCAAGGTGGCTGGCTACACTACAGGCTTCTTCATAATCGGACAC
ACCGTGGCCACGACTCAGGACGTGTTTTGCGCCATGTTCACAGAGAGTTC
GCGGCTGCACCAGCAGCGTGGACTGCCGTGCCCAAGGCTTCTTCATAATC
GGACACACCGTGGCCACGACTCAGGACGTGTTTTGCGCCATGTTCACAGA
GAGTTCGCGGCTGCACCAGCAGCGTGGACTGCCGTGCCCAAGGTTCCACT
GTCCGGTTGAGTTTACAGAGCTGCTCTCGTGGTCGTTGGCACAGCAAGGA
TTGAAGATTTTCCGGGCAAGCGTCATTATGGCCAGGGGGCATTACGAGCA
CACCCCTTGGACAAACGACGGCTACACCGTGGCTCCGAGTATCAATGGTT
ATTGAGTTCCACTGTCCGGTTGAGTTTACAGAGCTGCTCTCGTGGTCGTT
GGCACAGCAAGGATTGAAGATTTTCCGGGCAAGCGTCATTATGGCCAGGG
GGCATTACGAGCACACCCCTTGGACAAACGACGGCTACACCGTGGCTCCG
AGTATCAATGGTTATTGA
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