mRNA_L-elsbetiae_contig5115.13174.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5115.13174.1
Unique NamemRNA_L-elsbetiae_contig5115.13174.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5115.13174.1 vs. uniprot
Match: D8LER4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER4_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.730e-25
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:    1 FADVSGLKEWKGLTWGMLPLHTSGLIACTYHVFYNSPELISLVAMQ 138
            FADVSGLKEWKGLTWGMLPLHTSGLIACTYH+FYN+PELISLVAMQ
Sbjct:   39 FADVSGLKEWKGLTWGMLPLHTSGLIACTYHIFYNAPELISLVAMQ 84
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BLAST of mRNA_L-elsbetiae_contig5115.13174.1 vs. uniprot
Match: A0A6H5KGT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGT7_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 7.290e-24
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:    1 FADVSGLKEWKGLTWGMLPLHTSGLIACTYHVFYNSPELISLVAMQ 138
            FADVSGLKEWKGLTWGMLPLHTSGLIACTYH+FYN+PELISLVAMQ
Sbjct:  304 FADVSGLKEWKGLTWGMLPLHTSGLIACTYHIFYNAPELISLVAMQ 349
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BLAST of mRNA_L-elsbetiae_contig5115.13174.1 vs. uniprot
Match: A0A835YN17_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN17_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.890e-19
Identity = 34/46 (73.91%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 FADVSGLKEWKGLTWGMLPLHTSGLIACTYHVFYNSPELISLVAMQ 138
            +A VSGL++WKGLTWGMLPLHTSGL ACTYH+ YNSP+++ LVA+Q
Sbjct:   58 YAAVSGLQQWKGLTWGMLPLHTSGLCACTYHILYNSPDVVGLVALQ 103
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BLAST of mRNA_L-elsbetiae_contig5115.13174.1 vs. uniprot
Match: A0A8J2SCB0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SCB0_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 5.470e-17
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 FADVSGLKEWKGLTWGMLPLHTSGLIACTYHVFYNSPELISLVAMQ 138
            +ADV G KEWKG+TWGMLPLHTSG++AC YH+FYN+PEL   VA+Q
Sbjct:  230 YADVIGRKEWKGVTWGMLPLHTSGIVACCYHLFYNAPELSWCVALQ 275
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BLAST of mRNA_L-elsbetiae_contig5115.13174.1 vs. uniprot
Match: A0A7S0V9I3_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V9I3_9CRYP)

HSP 1 Score: 77.8 bits (190), Expect = 6.550e-17
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 FADVSGLKEWKGLTWGMLPLHTSGLIACTYHVFYNSPELISLVAMQ 138
            +A+ SG ++WKGLTWGMLPLH SG+ ACTYH +YNSPEL  LVA+Q
Sbjct:   64 YAEASGNEKWKGLTWGMLPLHASGIAACTYHWWYNSPELSFLVALQ 109
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BLAST of mRNA_L-elsbetiae_contig5115.13174.1 vs. uniprot
Match: R1B633_EMIHU (Uncharacterized protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1B633_EMIHU)

HSP 1 Score: 75.1 bits (183), Expect = 1.380e-16
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    4 ADVSGLKEWKGLTWGMLPLHTSGLIACTYHVFYNSPELISLVAMQVCM 147
            A +SG + WKGLTWGMLPLH SG+ ACTYH FYNSP+L  LV +Q  +
Sbjct:   22 AALSGNERWKGLTWGMLPLHASGVAACTYHFFYNSPDLSFLVLLQAAL 69
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BLAST of mRNA_L-elsbetiae_contig5115.13174.1 vs. uniprot
Match: L1JDG2_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JDG2_GUITC)

HSP 1 Score: 75.1 bits (183), Expect = 1.610e-16
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 FADVSGLKEWKGLTWGMLPLHTSGLIACTYHVFYNSPELISLVAMQ 138
            +AD S  + WKGLTWGMLPLH SG+ ACTYH FYN+P+L  LVA+Q
Sbjct:   28 YADASKDQTWKGLTWGMLPLHASGVAACTYHFFYNNPDLSFLVALQ 73
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BLAST of mRNA_L-elsbetiae_contig5115.13174.1 vs. uniprot
Match: A0A7S1SHK5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SHK5_9CHLO)

HSP 1 Score: 79.0 bits (193), Expect = 1.930e-16
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 FADVSGLKEWKGLTWGMLPLHTSGLIACTYHVFYNSPELISLVAMQVCM 147
            +ADVSG   WKGLTWGMLP H+SG+ AC YHVFYN+P L S+VA+Q  +
Sbjct:   85 YADVSGNPRWKGLTWGMLPSHSSGITACVYHVFYNAPSLSSVVALQAML 133
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BLAST of mRNA_L-elsbetiae_contig5115.13174.1 vs. uniprot
Match: A0A6T8MJU4_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8MJU4_HEMAN)

HSP 1 Score: 79.3 bits (194), Expect = 5.020e-16
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 FADVSGLKEWKGLTWGMLPLHTSGLIACTYHVFYNSPELISLVAMQ 138
            +A+VSG ++WKGLTWGMLPLH SG+ ACTYH +YNSPEL  LVA+Q
Sbjct:  267 YAEVSGNEKWKGLTWGMLPLHASGVAACTYHWWYNSPELAFLVALQ 312
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BLAST of mRNA_L-elsbetiae_contig5115.13174.1 vs. uniprot
Match: F0XWZ6_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWZ6_AURAN)

HSP 1 Score: 72.8 bits (177), Expect = 1.800e-15
Identity = 27/46 (58.70%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 FADVSGLKEWKGLTWGMLPLHTSGLIACTYHVFYNSPELISLVAMQ 138
            +A+ S    W+G+TWGMLPLHTSG++AC YH+FYN+P+L   VA+Q
Sbjct:   35 YAEASATPAWRGVTWGMLPLHTSGIVACCYHLFYNAPDLAWCVALQ 80
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5115.13174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LER4_ECTSI1.730e-2595.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGT7_9PHAE7.290e-2495.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YN17_9STRA1.890e-1973.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J2SCB0_9STRA5.470e-1771.74Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S0V9I3_9CRYP6.550e-1769.57Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
R1B633_EMIHU1.380e-1664.58Uncharacterized protein (Fragment) n=2 Tax=Emilian... [more]
L1JDG2_GUITC1.610e-1667.39Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
A0A7S1SHK5_9CHLO1.930e-1665.31Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A6T8MJU4_HEMAN5.020e-1671.74Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
F0XWZ6_AURAN1.800e-1558.70Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5115contigL-elsbetiae_contig5115:451..878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.7
Seed ortholog evalue1.1e-19
Seed eggNOG ortholog2880.D8LER4
KEGG koko:K03453
KEGG TC2.A.28
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Protein of unknown function (DUF2499)
EggNOG OGs2ANPI@1,2RZEV@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons2
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816521.89231-CDS-L-elsbetiae_contig5115:450..5651622816521.89231-CDS-L-elsbetiae_contig5115:450..565Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5115 451..565 -
1691683620.3465466-CDS-L-elsbetiae_contig5115:450..5651691683620.3465466-CDS-L-elsbetiae_contig5115:450..565Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5115 451..565 -
1622816521.9031508-CDS-L-elsbetiae_contig5115:834..8781622816521.9031508-CDS-L-elsbetiae_contig5115:834..878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5115 835..878 -
1691683620.3627377-CDS-L-elsbetiae_contig5115:834..8781691683620.3627377-CDS-L-elsbetiae_contig5115:834..878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5115 835..878 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5115.13174.1prot_L-elsbetiae_contig5115.13174.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5115 451..878 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5115.13174.1

>prot_L-elsbetiae_contig5115.13174.1 ID=prot_L-elsbetiae_contig5115.13174.1|Name=mRNA_L-elsbetiae_contig5115.13174.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=53bp
FADVSGLKEWKGLTWGMLPLHTSGLIACTYHVFYNSPELISLVAMQVCMY
GT*
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mRNA from alignment at L-elsbetiae_contig5115:451..878-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5115.13174.1 ID=mRNA_L-elsbetiae_contig5115.13174.1|Name=mRNA_L-elsbetiae_contig5115.13174.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=428bp|location=Sequence derived from alignment at L-elsbetiae_contig5115:451..878- (Laminarionema elsbetiae ELsaHSoW15)
TTCGCGGACGTGTCGGGCCTGAAGGAGTGGAAGGGGCTCACGTGGTGAGG
CTGCTGTTGCTGCTGCTGCTATTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTTGTTGCTGCTGTTGTTATCACTGCTGCCGCTGCCG
CTGCTGCTGCTGCTGCTGCTGCTGCTGTTGCTGATACCGGCTGATACCCC
TCACCTCCAAAGACATATATACCCGCTTCCACTCTGGCGACACTGCATTG
ATATTTACCACACGGCAAAAAAAAAACTAATTTTCGAAATCAAACCCAAC
CCCCCAACCTCAGGGGGATGCTGCCTCTGCACACGAGCGGCCTCATCGCG
TGCACGTACCACGTCTTCTACAACTCCCCGGAGCTGATCTCACTCGTGGC
GATGCAGGTGTGCATGTATGGCACATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5115:451..878-

>mRNA_L-elsbetiae_contig5115.13174.1 ID=mRNA_L-elsbetiae_contig5115.13174.1|Name=mRNA_L-elsbetiae_contig5115.13174.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=318bp|location=Sequence derived from alignment at L-elsbetiae_contig5115:451..878- (Laminarionema elsbetiae ELsaHSoW15)
TTCGCGGACGTGTCGGGCCTGAAGGAGTGGAAGGGGCTCACGTGTTCGCG
GACGTGTCGGGCCTGAAGGAGTGGAAGGGGCTCACGTGGGGGATGCTGCC
TCTGCACACGAGCGGCCTCATCGCGTGCACGTACCACGTCTTCTACAACT
CCCCGGAGCTGATCTCACTCGTGGCGATGCAGGTGTGCATGTATGGCACA
TAGGGGGATGCTGCCTCTGCACACGAGCGGCCTCATCGCGTGCACGTACC
ACGTCTTCTACAACTCCCCGGAGCTGATCTCACTCGTGGCGATGCAGGTG
TGCATGTATGGCACATAG
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