mRNA_L-elsbetiae_contig5114.13173.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5114.13173.1
Unique NamemRNA_L-elsbetiae_contig5114.13173.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5114.13173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5114contigL-elsbetiae_contig5114:8571..12454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size364
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816521.7490952-CDS-L-elsbetiae_contig5114:8571..86761622816521.7490952-CDS-L-elsbetiae_contig5114:8571..8676Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5114 8572..8676 -
1691683620.2454386-CDS-L-elsbetiae_contig5114:8571..86761691683620.2454386-CDS-L-elsbetiae_contig5114:8571..8676Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5114 8572..8676 -
1622816521.7610667-CDS-L-elsbetiae_contig5114:12196..124541622816521.7610667-CDS-L-elsbetiae_contig5114:12196..12454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5114 12197..12454 -
1691683620.2559805-CDS-L-elsbetiae_contig5114:12196..124541691683620.2559805-CDS-L-elsbetiae_contig5114:12196..12454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5114 12197..12454 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5114.13173.1prot_L-elsbetiae_contig5114.13173.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5114 8572..12454 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5114.13173.1

>prot_L-elsbetiae_contig5114.13173.1 ID=prot_L-elsbetiae_contig5114.13173.1|Name=mRNA_L-elsbetiae_contig5114.13173.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
RKSTHNRVTSDDDDVNTVLRYQEDLLKLSSYLGSVRFTVHASHGNFQPVS
ARPVEIAETELARRKTKLTIAGAATSSASGNSLVGQPTSLKTAAAAGTRW
AHFSPRTHSRRKRSTTRSSRG
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mRNA from alignment at L-elsbetiae_contig5114:8571..12454-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5114.13173.1 ID=mRNA_L-elsbetiae_contig5114.13173.1|Name=mRNA_L-elsbetiae_contig5114.13173.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3884bp|location=Sequence derived from alignment at L-elsbetiae_contig5114:8571..12454- (Laminarionema elsbetiae ELsaHSoW15)
CGCAAGTCGACACACAACCGCGTTACCTCTGACGACGACGATGTCAACAC
TGTTTTGCGCTACCAAGAGGATCTATTAAAGCTTTCTTCATATCTTGGAA
GCGTTCGTTTCACGGTTCACGCAAGTCACGGCAATTTTCAACCCGTATCA
GCCCGACCGGTGGAGATTGCGGAGACAGAATTGGCCCGAAGAAAAACTAA
ACTCACAATCGCGGGCGCTGCAACATCCTCTGCCTCGGGGAACAGCCTTG
TCGGTCAGGTGAGAGCCTCTCTATAACCTTTTGACGCACATGCATCAAAG
ATATGTGCGCGCAATGCTTCTTGGCGATTATGGAGATACTGCTGTCGCAA
CCGGCAATTGAAATGTGTCTGACAGATACCTGCTGTCGGTGAACGGGGCC
TGTGTATCGAGAAGGAATGGAAAGCGCCGTCAGTGCATGTGTAATGATGA
TGACAGAAGGAACATGAAACTACCTATAGTGCTACACGAAAGGAGCCCCC
TTCTGTGTGACCCCGGTTCAGTACTCTGGCAAGATGCCCTCGTTACAAGG
AGCATCAGAGCACTGGAAATAAAGAAGAAAAAAAAACACGAAAGATGAGT
GCGCGAAACTCGATGGCCGGCGAGCGTGGGGATTGTGCATCACACAACGG
GTCATGCATTCATGTGTACGTCGTACGTCGTACAGTGCGATGGTTCTGTG
GTGGGAGCCCGGTTTAGGTGTGTGTATTCTTGAATGTACACGTGTCGTTC
GCTTAGAAATCATGGATGCCGTCTGCATGTGTAGGGACTAGGAGCGACGT
GATAAGCGAACGATGTATCTAGTCTACCAGGTACATTGTTTCTTCACAGA
ATCGAGATTGCTAATTCCAAAAATCTATGTAGCAACTCACGGCCCGTGGT
GACAGGAGTGCTTGAGCCATTAGAAGATCCGAAAAAAGACATACGCAGAT
CCACCGGGCAAGGGTACACAAAGCCGAGGAGGTACACCTATGAGTATGCC
GGTAAAAAACATATCTAGATATATCCTACGAACCACGCATCCACGAATGA
ATCTCTATTCGACTACAGAACTACGTTTCCCCCCCGTCCACGATCACCCA
AAAATGCAGGGTTGGTTGCCGGCTACAGCCAATGACTGTCTGGAGTGCTG
CTTGTACAAAAACGCACGGGTCGCGTGGTGGATATGGAAGAGGAACGCAA
TTGCTGTATGAAGTGCTGTCAGAGTGACAATCCGCCGAGATGCGGTGAAA
AATAACAGAGCCAACCAAAAGCCACCAAGCAATCGACAGTTACCAAGGTC
CATCCAATCATCCGTGGTACATAGGTACAGCAAGAACAGCCCGACACCGA
TCCGTTTCGTTCTACATTGAATGGTTCTTCCACCAGCGGGTACACCATGT
AGTTGAAGTGCCGGGGTAGGTATATATCCCGAAAATGGACATTTGGGGGT
ATACCCCCGTACTTGTCGGACTTTTGGGAGTAGACTGTGAACACAGCCTC
TGGGGCTGTCAACAGTCGCCCAGAATCACACTCGGAAATCGGTTCTCGCG
CGCCTACAGCACGCACAAGGACCATGCCAAGCAAGCCAAACAACGTCCGC
GAAAATTCAGAGACTTTTTCAGCCTACACAGCGCCAGGGTGCACACGGGC
CCGGCAGCATACCCCCGTGTGTCCGATGTCCCGGGGGGTGTACCCCGACG
ACTCTACTAGTTTTCATCCTATTACCCCCATCTGTCTGCATTTTACCCCC
ACTTATCCGAAAAGAACCCCCGCCTGTCCGCGCTTTCGGAGCCCTCCGTG
GCCCTGCCCCGAATAGACCGCGGCACAGAGGCACAACAAAAACTAGCAGC
CCACACGATGCGGACCAGCTCCGTGTGGCGTAATACCGCGAGGAGGATAT
GCTGGTCCGCATCGTGTGGGCTGCTCGTTTTTGTTGACCCTAACCCCTAA
CCCTAACCCTAACCCTGTGTGTTAGAGTGAAAAACAACAAAACTGCCACG
TGTTGTTGATGTTGGACTTTATTTTCCCCTCTCTCACATACATGTGCGCG
CGCTTGAAGCAACTGCCCTCTTGTTGGCGGGACCATATCGCTGTGCGATG
GCATCCTCTTGCTCGTGTCTCTATCCTGCGGTGTGTCTCCTAGAGTGTGT
GCTTGCTGCGCCTCTCGTCACTGCTGTCGTCTCGCTTTGAGAAAACAAAT
GGGGGAGGGGTGCTGGGACACTGGGACATCGTCACCTTTTCGAAGGGGTT
TGTGGGTTGCCTTTGGCAGTTTCCTCTCTTACCCGATGTCCGCTCTGCCA
CGCTCATCTCTTTCAGCATTGCCACCACGAAAGACAGACAGGCGCATAAG
GTCGGCTTTTTTTTTGTGAATCCACAGCAACTACTGTCAGATCTCTTCGC
AGCTCCCTGTGCCGATCGTATTTCCCAAGATAGAGGGTCATCATGTGCGG
TAGACTATGTCTTTCAACAGAGGCGCCTCTTGACGATTTTCTGGAGTCTC
TTGGTTTCGTCAGAAAACTAACGAAACAAAAAGCTCGCTTCGCTCACGCG
CCTCATTGAAAATAGCGTATGAAATGATTTTCGAAGTCGATCGCACAGTA
GTCGTGTGCGGGTAGCCCGCACGTTTATGGAAAACAAACGAGGCAAGTTC
TCAGCGTACAGCCACCACCTCAAAGAGGATGTGCCAATAGACATTTGTCA
AAGAACAAGCAAATACCATTTATTACGCCCGCTAATGATTGATTGTTCTC
GGGGTTGGTCGTCGAAATCGGGGTAGCATGTGTCTTGGTGTAGGGGCAAG
TCCCCAGGGGTTCCCCCTACGGACTACCGGTGAGGCGCTTTTTGTGTGCA
GAGATTTCATTTTTGATCGGATTAAATTTTACTGCCTCTTCCTGCGGTCG
CAGCAGAAATCATCCTTGTAGGATGTGTGTAGTACATTCATGTGTGGGGC
ATATCTACAGTGTAGTATCATGTAGCACTGGCACTTTTATCTCGTTGATC
TGCTGCAGCTGGAAGCCGCTGCACCCGGTGGACAAGCCGGTGGGGTGGCG
CGGGTTATACCTGTCACCTTTTCACGTGCATCGGCTTCTTCTGTCTCTAA
ATATAGAGGTCGCTCGGCGCGAGTTCCGCCGCACCCCCCCCTTGTTGTTT
CGACAGGGCGGGGCTGGCAGGCAGGATGTAGACCACAAGCAACATGTGGC
CTTTGCGACGACTTTGTTGGTGGCGGTGGGTCGTGGTGTGTGTGTGTGTT
GTTATTGGTTTTGTGGGGATGCCTCCAACGGTCAACATAAACAGGGCTCC
TTCGCCAACGGGCGCTGTGTGTGAGATCAATGAAAGCAGCGTGCTGATGT
AAATTGTATATATATGTACGTACGTACACCCAATATCGTCTCGCTGGAAC
TGTGTGCGGGCTCGTAACTCTTGGTAGAGGGTAAACGCCACGCACCCCCC
CCGAACGGAACCACACAGGTACATGTAGGAGGGCTTGAGATCCCAACAGC
CGCACCGTGGATGAGCTAGCTGGCTGACGTGATGTTTCGCCACAAGCTGG
TTGCGTCTCTCACGGCAGCCTGCTCTCAGTTTTCTCATCTTCCAGCACAC
ACAAATTAAAATGCGCGGAATGTCTGCTGCACACACTACTGCATACCCAC
CACCAGCAACAGCGGTACATACTGTTGGGACGCGGCGGAGCCCCCGGTTA
ATCCCCGTTAAAAGTGTCGCCCCTATCTCTCTCTCTCTCTCTCTCCTTCC
CTCCCTTCCTGCGCGTTTGGGCGAGCAGCCCACGTCGTTGAAAACAGCCG
CAGCAGCAGGAACACGATGGGCGCACTTTTCTCCAAGAACCCATTCAAGA
AGAAAAAGGTCGACTACGAGAAGCTCGAGGGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5114:8571..12454-

>mRNA_L-elsbetiae_contig5114.13173.1 ID=mRNA_L-elsbetiae_contig5114.13173.1|Name=mRNA_L-elsbetiae_contig5114.13173.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig5114:8571..12454- (Laminarionema elsbetiae ELsaHSoW15)
CGCAAGTCGACACACAACCGCGTTACCTCTGACGACGACGATGTCAACAC
TGTTTTGCGCTACCAAGAGGATCTATTAAAGCTTTCTTCATATCTTGGAA
GCGTTCGTTTCACGGTTCACGCAAGTCACGGCAATTTTCAACCCGTATCA
GCCCGACCGGTGGAGATTGCGGAGACAGAATTGGCCCGAAGAAAAACTAA
ACTCACAATCGCGGGCGCTGCAACATCCTCTGCCTCGGGGAACAGCCTTG
TCGGTCAGCGCAAGTCGACACACAACCGCGTTACCTCTGACGACGACGAT
GTCAACACTGTTTTGCGCTACCAAGAGGATCTATTAAAGCTTTCTTCATA
TCTTGGAAGCGTTCGTTTCACGGTTCACGCAAGTCACGGCAATTTTCAAC
CCGTATCAGCCCGACCGGTGGAGATTGCGGAGACAGAATTGGCCCGAAGA
AAAACTAAACTCACAATCGCGGGCGCTGCAACATCCTCTGCCTCGGGGAA
CAGCCTTGTCGGTCAGCCCACGTCGTTGAAAACAGCCGCAGCAGCAGGAA
CACGATGGGCGCACTTTTCTCCAAGAACCCATTCAAGAAGAAAAAGGTCG
ACTACGAGAAGCTCGAGGGGGCCCACGTCGTTGAAAACAGCCGCAGCAGC
AGGAACACGATGGGCGCACTTTTCTCCAAGAACCCATTCAAGAAGAAAAA
GGTCGACTACGAGAAGCTCGAGGGGG
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