mRNA_L-elsbetiae_contig51.13145.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig51.13145.1
Unique NamemRNA_L-elsbetiae_contig51.13145.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig51.13145.1 vs. uniprot
Match: D8LEH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEH4_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 7.540e-27
Identity = 59/71 (83.10%), Postives = 65/71 (91.55%), Query Frame = 3 
Query:  288 DSDMLLRAKDKDLHDMLGMTHPLHRRRVCLGIQKIKDKEEEE-MGKNYADMDDYVRRLDRDRVRLITKLKV 497
            D  +LL  +DKDLHDMLG+ HPLHRRRVCLGIQKIKDKEE+E MGKNYADMDDYV+RLDRDRVRL+TKLKV
Sbjct:  381 DGALLLNLEDKDLHDMLGIEHPLHRRRVCLGIQKIKDKEEQEQMGKNYADMDDYVKRLDRDRVRLVTKLKV 451
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BLAST of mRNA_L-elsbetiae_contig51.13145.1 vs. uniprot
Match: A0A6H5JBA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA5_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 4.410e-11
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 3 
Query:  369 VCLGIQKIKDKEEEEMGKNYADMDDYVRRLDRDRVRLITKLKV 497
            + L ++KIKDKEEEEMGK YADMDDYV+RLDRDRVRL+TKLKV
Sbjct:  290 LLLNLEKIKDKEEEEMGKKYADMDDYVKRLDRDRVRLVTKLKV 332
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BLAST of mRNA_L-elsbetiae_contig51.13145.1 vs. uniprot
Match: A0A8K1FKC6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKC6_PYTOL)

HSP 1 Score: 60.8 bits (146), Expect = 4.500e-7
Identity = 31/69 (44.93%), Postives = 45/69 (65.22%), Query Frame = 3 
Query:  288 DSDMLLRAKDKDLHDMLGMTHPLHRRRVCLGIQKIKDKEEEEMGKNYADMDDYVRRLDRDRVRLITKLK 494
            D  +L+   D DL  +L M HPLHRRR+ L I ++KD+E  + G N+  + DY+  LDRDR+ +I +LK
Sbjct:  327 DGAVLVHLTDADLQLLLDMAHPLHRRRLLLHIDRLKDRELLDHGLNFNQLQDYLAVLDRDRLSVIAELK 395
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BLAST of mRNA_L-elsbetiae_contig51.13145.1 vs. uniprot
Match: K3WP86_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WP86_GLOUD)

HSP 1 Score: 58.2 bits (139), Expect = 3.690e-6
Identity = 29/69 (42.03%), Postives = 45/69 (65.22%), Query Frame = 3 
Query:  288 DSDMLLRAKDKDLHDMLGMTHPLHRRRVCLGIQKIKDKEEEEMGKNYADMDDYVRRLDRDRVRLITKLK 494
            D  MLL  +D DL  +LG+  PLHR+R+ + I ++KD+   E G +Y  + DY+  LDRDR+ ++ +LK
Sbjct:  355 DGCMLLHLQDCDLQLLLGIMQPLHRKRLLVHIDRLKDRALLEHGVDYGQLQDYLAVLDRDRIAVVAQLK 423
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig51.13145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LEH4_ECTSI7.540e-2783.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBA5_9PHAE4.410e-1181.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8K1FKC6_PYTOL4.500e-744.93Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WP86_GLOUD3.690e-642.03Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig51contigL-elsbetiae_contig51:26951..28065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.6
Seed ortholog evalue4.8e-25
Seed eggNOG ortholog2880.D8LEH4
Preferred nameCDA
KEGG rclassRC00074,RC00514
KEGG koko:K01489
KEGG ReactionR01878,R02485,R08221
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0001558,GO:0001775,GO:0001882,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004126,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006140,GO:0006206,GO:0006213,GO:0006216,GO:0006217,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0008150,GO:0008152,GO:0008270,GO:0008655,GO:0009056,GO:0009058,GO:0009112,GO:0009116,GO:0009119,GO:0009120,GO:0009163,GO:0009164,GO:0009451,GO:0009790,GO:0009792,GO:0009892,GO:0009972,GO:0009987,GO:0010563,GO:0012505,GO:0016043,GO:0016070,GO:0016192,GO:0016787,GO:0016810,GO:0016814,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019239,GO:0019438,GO:0019439,GO:0019858,GO:0022607,GO:0023052,GO:0030141,GO:0030308,GO:0031323,GO:0031324,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032501,GO:0032502,GO:0032940,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0034774,GO:0036094,GO:0036230,GO:0040008,GO:0042119,GO:0042454,GO:0042455,GO:0042802,GO:0042803,GO:0043094,GO:0043097,GO:0043167,GO:0043169,GO:0043170,GO:0043174,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045926,GO:0045934,GO:0045936,GO:0045980,GO:0046087,GO:0046092,GO:0046108,GO:0046109,GO:0046121,GO:0046125,GO:0046127,GO:0046131,GO:0046132,GO:0046133,GO:0046134,GO:0046135,GO:0046483,GO:0046700,GO:0046872,GO:0046903,GO:0046914,GO:0046983,GO:0047844,GO:0048519,GO:0048523,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051716,GO:0055086,GO:0060205,GO:0062012,GO:0062014,GO:0065003,GO:0065007,GO:0070013,GO:0070820,GO:0071704,GO:0071840,GO:0072527,GO:0072528,GO:0072529,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0097708,GO:0099503,GO:0101002,GO:1901135,GO:1901136,GO:1901137,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901657,GO:1901658,GO:1901659,GO:1904724,GO:1904813
EggNOG free text desc.cytidine deaminase activity
EggNOG OGsCOG0295@1,KOG0833@2759
EC3.5.4.5
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size700
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig51.13145.1prot_L-elsbetiae_contig51.13145.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig51 27247..27997 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816518.8697674-UTR-L-elsbetiae_contig51:26950..272461622816518.8697674-UTR-L-elsbetiae_contig51:26950..27246Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig51 26951..27246 +
1691683618.06623-UTR-L-elsbetiae_contig51:26950..272461691683618.06623-UTR-L-elsbetiae_contig51:26950..27246Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig51 26951..27246 +
1622816518.9013555-UTR-L-elsbetiae_contig51:27997..280651622816518.9013555-UTR-L-elsbetiae_contig51:27997..28065Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig51 27998..28065 +
1691683618.1050956-UTR-L-elsbetiae_contig51:27997..280651691683618.1050956-UTR-L-elsbetiae_contig51:27997..28065Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig51 27998..28065 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816518.880134-CDS-L-elsbetiae_contig51:27246..273631622816518.880134-CDS-L-elsbetiae_contig51:27246..27363Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 27247..27363 +
1691683618.0803704-CDS-L-elsbetiae_contig51:27246..273631691683618.0803704-CDS-L-elsbetiae_contig51:27246..27363Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 27247..27363 +
1622816518.8904254-CDS-L-elsbetiae_contig51:27778..279971622816518.8904254-CDS-L-elsbetiae_contig51:27778..27997Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 27779..27997 +
1691683618.0943012-CDS-L-elsbetiae_contig51:27778..279971691683618.0943012-CDS-L-elsbetiae_contig51:27778..27997Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 27779..27997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig51.13145.1

>prot_L-elsbetiae_contig51.13145.1 ID=prot_L-elsbetiae_contig51.13145.1|Name=mRNA_L-elsbetiae_contig51.13145.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MLLRAKDKDLHDMLGMTHPLHRRRVCLGIQKIKDKEEEEMGKNYADMDDY
VRRLDRDRVRLITKLKVRAPVRVWSFETGSAMRQVHYCRLKQHRHVRHGT
SFRTHLGQHDV*
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mRNA from alignment at L-elsbetiae_contig51:26951..28065+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig51.13145.1 ID=mRNA_L-elsbetiae_contig51.13145.1|Name=mRNA_L-elsbetiae_contig51.13145.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1115bp|location=Sequence derived from alignment at L-elsbetiae_contig51:26951..28065+ (Laminarionema elsbetiae ELsaHSoW15)
CTTCCACGACGATTGTTCAAGCCTTGTGCAAGCCACCTCGGTCTTTGAAA
CCGTACCTAATAAATTGCCAAGCTCTGCAATATTTACCACGGCAAAAGCG
AGCTTCGATCCTGTTTACGCACCCTGGAGCCTCCCCTCGGTTGCCGTCTT
CCTCAAGTTAAAGGAAGTGTAAACTCGAGCGCTGCGGTCGACCTCTTCCT
ACAATCCCCAAAACCGATCCCCAGCATAGATAAAGGTGTGCAAGTAAAGG
AGATCAAAAACAAAAAGTTCGCCCTCGACCCCCCCGTGATTCGGACATGC
TGTTGCGAGCGAAGGACAAAGACCTACACGACATGTTGGGAATGACCCAC
CCGCTGCACCGCAGAAGAGTTTGCCTCGGGATACAGAAGATCAAGGACAA
GGAGGAAGAGGAGGTACGTACGTAAAGGTTTGTCTCTCGGTCCTCCTTAT
CACCGGCCACTTCACACTCGTTTTTGGCCACTCCACGAAACCGTAGCCCC
ACTGCTGGCTGCATTGACTTCATGGAAAAGAGAGAAAAGTTTCACATAAA
GCAGCAGCAACCTTAAACGTGAACACGAAGAACATTAACCCTTTGGTGGT
GCCGCGCGCTTGCTCTTCTTCCTCCCAGTTAGTAATTCCCATCTTTCAGA
TCGACTACTGCTGTAAGCATTCCAGCTAGACTGTGTGCTCTAGGGAATCA
CCATTCACATACGGGATAGACCCCCTCTACGCCCCACATGTGAACCCTAA
CGAGGAATCCACCAAACGCATGGAATCAAACGCTGCGCGACGACTCTTGA
AACCTTGTGAACCTGATGGGACAAGCAGATGGGCAAGAACTATGCCGACA
TGGACGACTACGTGAGGCGCTTAGACAGAGACCGCGTTCGCCTCATAACA
AAGCTCAAGGTACGGGCTCCGGTTAGGGTTTGGAGCTTTGAAACGGGAAG
CGCCATGCGTCAAGTACACTACTGTAGACTAAAACAGCACCGCCACGTAA
GGCATGGAACCAGCTTCCGCACACATCTAGGACAACACGACGTCTGAGTA
CGCCGATTACTCGAATCGCACATGTTTTCTCCCTAAATACGGTATGTCTG
CTGCTCTTAATTCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig51:26951..28065+

>mRNA_L-elsbetiae_contig51.13145.1 ID=mRNA_L-elsbetiae_contig51.13145.1|Name=mRNA_L-elsbetiae_contig51.13145.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig51:26951..28065+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGTTGCGAGCGAAGGACAAAGACCTACACGACATGTTGGGAATGAC
CCACCCGCTGCACCGCAGAAGAGTTTGCCTCGGGATACAGAAGATCAAGG
ACAAGGAGGAAGAGGAGATGCTGTTGCGAGCGAAGGACAAAGACCTACAC
GACATGTTGGGAATGACCCACCCGCTGCACCGCAGAAGAGTTTGCCTCGG
GATACAGAAGATCAAGGACAAGGAGGAAGAGGAGATGGGCAAGAACTATG
CCGACATGGACGACTACGTGAGGCGCTTAGACAGAGACCGCGTTCGCCTC
ATAACAAAGCTCAAGGTACGGGCTCCGGTTAGGGTTTGGAGCTTTGAAAC
GGGAAGCGCCATGCGTCAAGTACACTACTGTAGACTAAAACAGCACCGCC
ACGTAAGGCATGGAACCAGCTTCCGCACACATCTAGGACAACACGACGTC
TGAATGGGCAAGAACTATGCCGACATGGACGACTACGTGAGGCGCTTAGA
CAGAGACCGCGTTCGCCTCATAACAAAGCTCAAGGTACGGGCTCCGGTTA
GGGTTTGGAGCTTTGAAACGGGAAGCGCCATGCGTCAAGTACACTACTGT
AGACTAAAACAGCACCGCCACGTAAGGCATGGAACCAGCTTCCGCACACA
TCTAGGACAACACGACGTCTGA
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