mRNA_L-elsbetiae_contig51.13144.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig51.13144.1
Unique NamemRNA_L-elsbetiae_contig51.13144.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig51.13144.1 vs. uniprot
Match: D8LEH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEH4_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 2.260e-57
Identity = 106/121 (87.60%), Postives = 112/121 (92.56%), Query Frame = 1 
Query:    1 RRTASAGGIALSELVSATTPPRRKSSALKMDHSGGAGGAEQRRALAQETYTKTFTGMQAYGESGMTVLEELIDAAFRACDVGHAQGQQRVTGAALLTRSGKIFAGCNVESTSADLSVGAER 363
            R T+  GGIALSELVSATTPPRR+SSA+K D SGG  GAE RR+LAQETYTKTFTGMQAYGESGMTVLEELIDAAFRACD+GHAQGQQRVTGAALLTRSGKIFAGCNVES+S DLSVGAER
Sbjct:  129 RHTSPGGGIALSELVSATTPPRRRSSAIKFDASGGNEGAELRRSLAQETYTKTFTGMQAYGESGMTVLEELIDAAFRACDIGHAQGQQRVTGAALLTRSGKIFAGCNVESSSVDLSVGAER 249
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BLAST of mRNA_L-elsbetiae_contig51.13144.1 vs. uniprot
Match: A0A6H5JBA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA5_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 2.190e-21
Identity = 64/121 (52.89%), Postives = 72/121 (59.50%), Query Frame = 1 
Query:    1 RRTASAGGIALSELVSATTPPRRKSSALKMDHSGGAGGAEQRRALAQETYTKTFTGMQAYGESGMTVLEELIDAAFRACDVGHAQGQQRVTGAALLTRSGKIFAGCNVESTSADLSVGAER 363
            R T+  GGIALSELVSATTPPRR+SSA+K+D  GG  GAE RR+LAQETYTKTFTGMQ   +S                 + H                   FAGCNVES+S DLSVGAER
Sbjct:   70 RHTSPGGGIALSELVSATTPPRRRSSAIKLDARGGNEGAELRRSLAQETYTKTFTGMQVQHDS-----------------LDHH------------------FAGCNVESSSVDLSVGAER 155
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BLAST of mRNA_L-elsbetiae_contig51.13144.1 vs. uniprot
Match: A0A835ZKB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKB1_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 7.180e-16
Identity = 46/80 (57.50%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:  136 AQETYTKTFTGMQAYGESGMTVLEELIDAAFRACDVGHAQGQQRVT---GAALLTRSGKIFAGCNVES-TSADLSVGAER 363
            A++ Y + F GMQAYGE+GMTVLEELI+AAF ACD   A G        GAA+LTR G+++A C VES TS +L V AER
Sbjct:  642 ARDAYGRAFGGMQAYGETGMTVLEELIEAAFGACDAAAAHGLATAAAPRGAAVLTRGGRVYAACGVESATSTELCVSAER 721
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BLAST of mRNA_L-elsbetiae_contig51.13144.1 vs. uniprot
Match: A0A521T9S2_9BACT (Cytidine deaminase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A521T9S2_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 5.870e-6
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:  193 MTVLEELIDAAFRACDVGHAQGQQRVTGAALLTRSGKIFAGCNVESTSADLSVGAER 363
            MT   EL+DAA +A +  HA+      GAALLTR GKI+ GCNVE+ +  L+V AER
Sbjct:    1 MTGPNELVDAARKAREHAHARQSNFKVGAALLTRDGKIYTGCNVENATYALTVCAER 57
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BLAST of mRNA_L-elsbetiae_contig51.13144.1 vs. uniprot
Match: A0A2V6FZV3_9BACT (Cytidine deaminase n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V6FZV3_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 2.310e-5
Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:  202 LEELIDAAFRACDVGHAQGQQRVTGAALLTRSGKIFAGCNVESTSADLSVGAER 363
            + +L+D AF+     HA       GAALLT+SGKIF+GCNVE+ S  L++ AER
Sbjct:    3 ITQLLDIAFQTRHQAHAPYSGFAVGAALLTKSGKIFSGCNVENVSLGLTICAER 56
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BLAST of mRNA_L-elsbetiae_contig51.13144.1 vs. uniprot
Match: A0A3B9LB79_9BACT (Cytidine deaminase (Fragment) n=1 Tax=Spartobacteria bacterium TaxID=2052183 RepID=A0A3B9LB79_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 3.230e-5
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:  199 VLEELIDAAFRACDVGHAQGQQRVTGAALLTRSGKIFAGCNVESTSADLSVGAER 363
            + EEL+ AA +A +  +A   +   G ALLT+SGKIF GCNVE+ S  L++ AER
Sbjct:    2 IQEELVKAALQARNYAYAPYSKFSVGCALLTKSGKIFTGCNVENISLGLTICAER 56
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BLAST of mRNA_L-elsbetiae_contig51.13144.1 vs. uniprot
Match: A0A7C4Y4J5_9BACT (Cytidine deaminase n=1 Tax=Caldisericum exile TaxID=693075 RepID=A0A7C4Y4J5_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 6.330e-5
Identity = 29/53 (54.72%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:  205 EELIDAAFRACDVGHAQGQQRVTGAALLTRSGKIFAGCNVESTSADLSVGAER 363
            EELID A +A    +A   +   GAALLT+SGKI+ GCNVE+ S   SV AER
Sbjct:    4 EELIDKAIKAMKNAYAPYSKFRVGAALLTKSGKIYTGCNVENVSYGASVCAER 56
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BLAST of mRNA_L-elsbetiae_contig51.13144.1 vs. uniprot
Match: A0A3C0R1U6_9BACT (Cytidine deaminase n=1 Tax=Spartobacteria bacterium TaxID=2052183 RepID=A0A3C0R1U6_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 6.330e-5
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:  199 VLEELIDAAFRACDVGHAQGQQRVTGAALLTRSGKIFAGCNVESTSADLSVGAER 363
            + EEL+ AA +A +  +A   +   G ALLT+SGKIF GCNVE+ S  L++ AER
Sbjct:    2 IQEELVKAALQARNYAYAPYSKFSVGCALLTKSGKIFTGCNVENISLGLTICAER 56
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig51.13144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LEH4_ECTSI2.260e-5787.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBA5_9PHAE2.190e-2152.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZKB1_9STRA7.180e-1657.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A521T9S2_9BACT5.870e-652.63Cytidine deaminase n=1 Tax=Acidobacteria bacterium... [more]
A0A2V6FZV3_9BACT2.310e-550.00Cytidine deaminase n=1 Tax=Verrucomicrobia bacteri... [more]
A0A3B9LB79_9BACT3.230e-549.09Cytidine deaminase (Fragment) n=1 Tax=Spartobacter... [more]
A0A7C4Y4J5_9BACT6.330e-554.72Cytidine deaminase n=1 Tax=Caldisericum exile TaxI... [more]
A0A3C0R1U6_9BACT6.330e-549.09Cytidine deaminase n=1 Tax=Spartobacteria bacteriu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig51contigL-elsbetiae_contig51:23450..24661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score204.1
Seed ortholog evalue3.6e-50
Seed eggNOG ortholog2880.D8LEH4
Preferred nameCDA
KEGG rclassRC00074,RC00514
KEGG koko:K01489
KEGG ReactionR01878,R02485,R08221
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0001558,GO:0001775,GO:0001882,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004126,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006140,GO:0006206,GO:0006213,GO:0006216,GO:0006217,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0008150,GO:0008152,GO:0008270,GO:0008655,GO:0009056,GO:0009058,GO:0009112,GO:0009116,GO:0009119,GO:0009120,GO:0009163,GO:0009164,GO:0009451,GO:0009790,GO:0009792,GO:0009892,GO:0009972,GO:0009987,GO:0010563,GO:0012505,GO:0016043,GO:0016070,GO:0016192,GO:0016787,GO:0016810,GO:0016814,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019239,GO:0019438,GO:0019439,GO:0019858,GO:0022607,GO:0023052,GO:0030141,GO:0030308,GO:0031323,GO:0031324,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032501,GO:0032502,GO:0032940,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0034774,GO:0036094,GO:0036230,GO:0040008,GO:0042119,GO:0042454,GO:0042455,GO:0042802,GO:0042803,GO:0043094,GO:0043097,GO:0043167,GO:0043169,GO:0043170,GO:0043174,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045926,GO:0045934,GO:0045936,GO:0045980,GO:0046087,GO:0046092,GO:0046108,GO:0046109,GO:0046121,GO:0046125,GO:0046127,GO:0046131,GO:0046132,GO:0046133,GO:0046134,GO:0046135,GO:0046483,GO:0046700,GO:0046872,GO:0046903,GO:0046914,GO:0046983,GO:0047844,GO:0048519,GO:0048523,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051716,GO:0055086,GO:0060205,GO:0062012,GO:0062014,GO:0065003,GO:0065007,GO:0070013,GO:0070820,GO:0071704,GO:0071840,GO:0072527,GO:0072528,GO:0072529,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0097708,GO:0099503,GO:0101002,GO:1901135,GO:1901136,GO:1901137,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901657,GO:1901658,GO:1901659,GO:1904724,GO:1904813
EggNOG free text desc.cytidine deaminase activity
EggNOG OGsCOG0295@1,KOG0833@2759
Ec32 ortholog descriptionCytidine deaminase SAM EF-hand Tudor and KOW domain protein
Ec32 orthologEc-21_004670.1
EC3.5.4.5
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-17_003960.1
Exons3
Model size364
Cds size363
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig51.13144.1prot_L-elsbetiae_contig51.13144.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig51 23450..24660 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816518.80471-CDS-L-elsbetiae_contig51:23449..236231622816518.80471-CDS-L-elsbetiae_contig51:23449..23623Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 23450..23623 +
1691683618.0220053-CDS-L-elsbetiae_contig51:23449..236231691683618.0220053-CDS-L-elsbetiae_contig51:23449..23623Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 23450..23623 +
1622816518.8202894-CDS-L-elsbetiae_contig51:24207..243381622816518.8202894-CDS-L-elsbetiae_contig51:24207..24338Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 24208..24338 +
1691683618.0403156-CDS-L-elsbetiae_contig51:24207..243381691683618.0403156-CDS-L-elsbetiae_contig51:24207..24338Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 24208..24338 +
1622816518.8325171-CDS-L-elsbetiae_contig51:24602..246601622816518.8325171-CDS-L-elsbetiae_contig51:24602..24660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 24603..24660 +
1691683618.0537562-CDS-L-elsbetiae_contig51:24602..246601691683618.0537562-CDS-L-elsbetiae_contig51:24602..24660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 24603..24660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig51.13144.1

>prot_L-elsbetiae_contig51.13144.1 ID=prot_L-elsbetiae_contig51.13144.1|Name=mRNA_L-elsbetiae_contig51.13144.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
RRTASAGGIALSELVSATTPPRRKSSALKMDHSGGAGGAEQRRALAQETY
TKTFTGMQAYGESGMTVLEELIDAAFRACDVGHAQGQQRVTGAALLTRSG
KIFAGCNVESTSADLSVGAER
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mRNA from alignment at L-elsbetiae_contig51:23450..24661+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig51.13144.1 ID=mRNA_L-elsbetiae_contig51.13144.1|Name=mRNA_L-elsbetiae_contig51.13144.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1212bp|location=Sequence derived from alignment at L-elsbetiae_contig51:23450..24661+ (Laminarionema elsbetiae ELsaHSoW15)
CGCCGCACGGCGTCCGCGGGCGGGATCGCGCTCTCGGAGTTGGTTTCGGC
TACAACCCCTCCGAGAAGGAAATCCTCGGCGCTGAAGATGGATCACAGCG
GTGGGGCGGGGGGGGCGGAACAACGCCGCGCCTTGGCCCAGGAGACGTAC
ACGAAAACGTTCACAGGGATGCAGGTATTGGTTTGCTCAGTAACGACCCG
ACTAAAAAACGCGGCCAGTCCGTTGGCTCATTGCTTGCGAGGCACGAGAG
AGTTGGGGAGATGGGGAGAGAGGAAATACGGAGTACCATGCCAAGTACGA
GAAAAATATGTCAGTGTACAGGAACGAGGTATTTTCGTTTGTTCGATGTT
GTCGAGTACCTATGCACCTAGGTTTAAGCGAGGACTTTTCGTTTGGTTGG
TGTTGACTCCCTACGTAGGCTAGTATAGCATGCCAACAAATATGTCGCAG
GGAGGAGGACGGCTACGCCAAATGCTTTAACGGGCACTATTTAGAGCAAA
CCAATCGGGTGCCATCGCGAGTGTACGAAACCTAGCTCAGTGACTACGCA
CTGAAAACCTAGGTCAAGGTGGCAGCGGTAAAGAAACGTTGGGGCAAGGC
TAGACCTGTAGTTGAGTTATTAGGAGGCTCATGTCCGGAAGGACGATGGG
CAACGCGTCGAGAGGCTGATGGTCTTGCCCGTATATACGTATTGCGACTT
GCTCGCCCTTGCCCTGGACGTTGCTAAACGACGTTGTTGCCCCGCACCAC
CTCTCCAGGCGTACGGTGAAAGCGGTATGACGGTCTTGGAGGAGCTAATA
GACGCTGCTTTCCGCGCCTGCGACGTGGGTCACGCTCAAGGGCAACAAAG
GGTCACCGGTGCCGCTTTGCTCACCCGGTCTGGCAAGATGTGAGAAGTGT
CGCATAGTTGCGGGAGGTAGGCTGCATGCAGCAAACACGCATCTGCATTC
GGTTCGCGAAACAGGTGGTAGCTTTTTTGAGGCGGCCACATTTCGAACCG
TGCGCCACGGAGATGCGGAGAGTTGCGTGGTTGCATCCGATGACGGCAGC
GAGGTGATCTAGGAGAGAGGCAGACCTGAATGCACATGCATAGGGTTCGA
CTTGAATACGCCCAAGCGCATGCATGCACTCTTGTTATCATGTGCGCAAA
TAGCTTCGCGGGCTGCAACGTCGAGTCCACGTCGGCGGACCTCAGCGTCG
GGGCGGAGCGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig51:23450..24661+

>mRNA_L-elsbetiae_contig51.13144.1 ID=mRNA_L-elsbetiae_contig51.13144.1|Name=mRNA_L-elsbetiae_contig51.13144.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig51:23450..24661+ (Laminarionema elsbetiae ELsaHSoW15)
CGCCGCACGGCGTCCGCGGGCGGGATCGCGCTCTCGGAGTTGGTTTCGGC
TACAACCCCTCCGAGAAGGAAATCCTCGGCGCTGAAGATGGATCACAGCG
GTGGGGCGGGGGGGGCGGAACAACGCCGCGCCTTGGCCCAGGAGACGTAC
ACGAAAACGTTCACAGGGATGCAGCGCCGCACGGCGTCCGCGGGCGGGAT
CGCGCTCTCGGAGTTGGTTTCGGCTACAACCCCTCCGAGAAGGAAATCCT
CGGCGCTGAAGATGGATCACAGCGGTGGGGCGGGGGGGGCGGAACAACGC
CGCGCCTTGGCCCAGGAGACGTACACGAAAACGTTCACAGGGATGCAGGC
GTACGGTGAAAGCGGTATGACGGTCTTGGAGGAGCTAATAGACGCTGCTT
TCCGCGCCTGCGACGTGGGTCACGCTCAAGGGCAACAAAGGGTCACCGGT
GCCGCTTTGCTCACCCGGTCTGGCAAGATGCGTACGGTGAAAGCGGTATG
ACGGTCTTGGAGGAGCTAATAGACGCTGCTTTCCGCGCCTGCGACGTGGG
TCACGCTCAAGGGCAACAAAGGGTCACCGGTGCCGCTTTGCTCACCCGGT
CTGGCAAGATCTTCGCGGGCTGCAACGTCGAGTCCACGTCGGCGGACCTC
AGCGTCGGGGCGGAGCGCCTTCGCGGGCTGCAACGTCGAGTCCACGTCGG
CGGACCTCAGCGTCGGGGCGGAGCGC
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