mRNA_L-elsbetiae_contig51.13142.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig51.13142.1
Unique NamemRNA_L-elsbetiae_contig51.13142.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig51.13142.1 vs. uniprot
Match: D8LEY4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEY4_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 1.540e-39
Identity = 107/145 (73.79%), Postives = 113/145 (77.93%), Query Frame = 3 
Query:   42 MAQFLIKIVNHFASEIITKRLANSRAFQQFAMKTHLKVEQTKK-AAENPAEAAKLMRGAGEKVKAEAESVASSFERFKAALKEEVSEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGINSDIAARVQRRRRR 473
            MAQFLIKIVNHFASEIITKRLANSRAFQQFAMKTHLKVEQTKK  A+NP EAAKLMRGAGEKVKAE +SVASSFERFKAALK+EV++GXXXXXXXXXXXXXXX                         G  + DIAARVQRRRRR
Sbjct:    1 MAQFLIKIVNHFASEIITKRLANSRAFQQFAMKTHLKVEQTKKKVADNPGEAAKLMRGAGEKVKAEVDSVASSFERFKAALKKEVAQGXXXXXXXXXXXXXXXSVPRN--------------------GSRSDDIAARVQRRRRR 125
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BLAST of mRNA_L-elsbetiae_contig51.13142.1 vs. uniprot
Match: A0A836CNG9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNG9_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.310e-6
Identity = 37/95 (38.95%), Postives = 53/95 (55.79%), Query Frame = 3 
Query:   42 MAQFLIKIVNHFASEIITKRLANSRAFQQFAMKTHLKVEQTKKAAENPAEAAKLMRGAG---------EKVKAEAESVASSFERFKAALKEEVSE 299
            M     KI+NHFASE+ITKRLA S+ FQ  A+KTH  V++ + A  +P    +L + A          E V  +A S   +  RF+ AL EE+++
Sbjct:    1 MNALFTKIINHFASEMITKRLAQSKTFQDMALKTHQHVQKGRGAINDPKLQQELYKEASKVASQVVSKEAVSQKASSFGQTLSRFRRALGEEINK 95
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig51.13142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEY4_ECTSI1.540e-3973.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CNG9_9STRA2.310e-638.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig51contigL-elsbetiae_contig51:13644..16300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_006020.1
Exons2
Model size898
Cds size435
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig51.13142.1prot_L-elsbetiae_contig51.13142.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig51 14066..16259 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816518.7352903-UTR-L-elsbetiae_contig51:13643..140651622816518.7352903-UTR-L-elsbetiae_contig51:13643..14065Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig51 13644..14065 -
1691683617.9569333-UTR-L-elsbetiae_contig51:13643..140651691683617.9569333-UTR-L-elsbetiae_contig51:13643..14065Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig51 13644..14065 -
1622816518.774142-UTR-L-elsbetiae_contig51:16259..163001622816518.774142-UTR-L-elsbetiae_contig51:16259..16300Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig51 16260..16300 -
1691683617.9996424-UTR-L-elsbetiae_contig51:16259..163001691683617.9996424-UTR-L-elsbetiae_contig51:16259..16300Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig51 16260..16300 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816518.7479804-CDS-L-elsbetiae_contig51:14065..143891622816518.7479804-CDS-L-elsbetiae_contig51:14065..14389Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 14066..14389 -
1691683617.9708261-CDS-L-elsbetiae_contig51:14065..143891691683617.9708261-CDS-L-elsbetiae_contig51:14065..14389Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 14066..14389 -
1622816518.7625506-CDS-L-elsbetiae_contig51:16148..162591622816518.7625506-CDS-L-elsbetiae_contig51:16148..16259Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 16149..16259 -
1691683617.9881942-CDS-L-elsbetiae_contig51:16148..162591691683617.9881942-CDS-L-elsbetiae_contig51:16148..16259Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 16149..16259 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig51.13142.1

>prot_L-elsbetiae_contig51.13142.1 ID=prot_L-elsbetiae_contig51.13142.1|Name=mRNA_L-elsbetiae_contig51.13142.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=145bp
MAQFLIKIVNHFASEIITKRLANSRAFQQFAMKTHLKVEQTKKAAENPAE
AAKLMRGAGEKVKAEAESVASSFERFKAALKEEVSEGGGGGSAARSSSSS
GGSGRSTAATSGNVPPKRRPTSAGGGVGGINSDIAARVQRRRRR*
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mRNA from alignment at L-elsbetiae_contig51:13644..16300-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig51.13142.1 ID=mRNA_L-elsbetiae_contig51.13142.1|Name=mRNA_L-elsbetiae_contig51.13142.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2657bp|location=Sequence derived from alignment at L-elsbetiae_contig51:13644..16300- (Laminarionema elsbetiae ELsaHSoW15)
CGAACACGAACAACCGACCTACTACGCGGAGACGCATTGCCATGGCTCAG
TTTCTGATCAAGATCGTAAACCACTTCGCCAGCGAGATCATCACTAAGCG
CTTGGCGAACTCGCGAGCATTCCAGCAGTTCGCGATGAAGACGCACCTGA
AGGTGTGTAACGCAACAAGAGAGGTAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGACGGGAGAGAGGGAGAGCGATACTATAATCTAAGCAGCC
CTGTAATCAGGCCTACCTTATGCTACCTCTCGGTTCTGATGCCATTGTTT
ATTCCTCGTCCACCACGGCCAGATACTCTGCGTGCGGTATATTTTGTGTA
CCCCAAAAACCCCGCACAAACGCACACCCGCTTGGGGAGAGGGGGGAAGG
ACGTGGGTAGTGGGTAGCACCCTCCTTTTGTGAAATGACAATACCTCCAT
TGCCAATATCTGACGCTGCCGTGTTGACACTACTGTGGTTGGGGGAAGCA
CCGTCACCCGTTTTCGCGCCACGACCCTGCGCGGGTGTTTGGTTCCACCT
AAAGGTACCATAGATACCAAACAGGGGCCGGTTGGTGATGTTGGCGTGTT
TATGTAGCGTGTCCACTTTTGTTTTCACCTCACATAGCGTGTAGAGGGGA
GCGGAGGGCTCCAGACTATCTGTGTCTTGATCTTTTGCTGTTGTACTTTG
TGGACCCTTCGGGTCCATTTTTATTTCTTTTCGTTTTACAGAATAACCCT
CTTTGTACAAGTGAAGTTACCCTGTGACGACGGGAATCGGCCGCGTCAGT
GTTGGATTTGTACCGACTCATCGAGGTGTGCTGGATAAAGAGATCGGAAC
GGTTTAATGTCAAGACAACACAACACACACCGCACACACACATACCGTAG
GTGACATAAGATAAGACACCCCCTGGACCGATTTTCAAAGCTCAAGTACT
CCACAGCAAGCAGAGCGTCAGTCCCGAAAATGTGGCGCTTGTAGTTAGAA
TCGTATTGGTTGCGGAGTAACCAAGCTTTCAATCTCGGTCCAGGGCGTGT
CTTATCTTATGTCACCTACGGTACATACATACATACATACATACATACCG
ACCTACTGGTCTACTACTCTGTTCGGCGTTCGGTGCCTTCTGTAACACTG
ACTGACTGATGTGCAGTTTCATGGATGTGGCATCGTATTCTGGAGCCTTA
TCGTATTGGATAAGGCTCCACAAAAAACGAAACGCAAACACACCCCAGAG
ACCCCATCCTGCTCTGACAAATCTAGACTTGTACCTCTACATTGTACTTC
AAGTCTGTGCATAGATACATAGGTATCTTGCACTCGAGTACACAGCAGTA
TTTGTCGACAACAGTCGTGTGTGTCCTCGAGGTACCACGCACTAATTATC
TAATTATGTCACATGGCGTAGACCCCGCGAGTTGAATTATCACGGGCGAA
GGTGCGTACCACCCCTTGGGAGTCCCAAAGGGACAAAGCACACAAGATCG
TGTCCTACATAGATACCATATGCTTTTTGGTTGGTTGTCTTCCGCGCCAG
CGTGATTGATGCTTTGGTATATACAACTTTCGTTTAGCTATTCAGCCACC
GAACCAGATCATACGAAGATGAAGACGAGCCGCATTGTGAGAACATCCCT
CATACATACGTACAACGACGATGCAGATACCGAACCAAGTGATAGTTCGC
CACTTCTACATACATATGGCGTTCACACACACGTTCAACCTTCCATCTGC
CATCTGCTTAAACAAGCCCCAGTATTATTGTAGACATTGTTTTTGTTCCC
TCACGCACCCCGTATGGCCCCGCCCTTCGCTTATCCCTTCCCGCCACCCC
TGTCCCGAATGCCGAAACACACAACACGATCCGCGCCCACCCGCCCGCCC
GCGCGGAACAGGTTGAGCAAACGAAGAAGGCGGCGGAAAACCCGGCGGAG
GCCGCAAAGCTCATGCGCGGGGCCGGGGAGAAGGTCAAGGCGGAGGCGGA
GTCGGTGGCGTCGAGCTTCGAACGCTTCAAGGCCGCGCTCAAAGAAGAGG
TTTCTGAAGGGGGGGGCGGGGGGAGTGCCGCCCGCAGCAGCAGCAGCAGC
GGCGGCAGCGGCAGATCTACAGCAGCGACGAGCGGCAACGTGCCGCCAAA
AAGGCGCCCGACAAGTGCAGGCGGGGGTGTTGGCGGCATCAACAGCGACA
TTGCTGCCCGCGTTCAACGACGGCGGAGAAGATGATGGGGGTTCCGAGGA
ATAAATTCTTGGTGTGGGAGAGCGTCTTCTGTGTGTACTGGATTGATTTT
TTTTGTTGTTTTCTTGCAGGCACGGCGACGTGTGAAAATCGGTGTGTTGT
TTCTTGTGTGCGTGCGTCACGGACTGAAGGGCGATTAAGGGGTTTGCGTG
TGCTCGCTTGTTGAGTGTTTCCCCGGGGGCATACATCCAGTTGGGAGGGG
ACTCGAACGTCAAAGACGGTGCCGCCGATCCTGCTTTTTTACTTCCATAG
ACCCAGCCGGGGTGGTAGATGCGAAGGCGTCTCGCAGGCTGTATGCCGCG
GGGTGGGTGGGGGATCTAGACCGGTTATTGTTTTCAAGCTCTTGTGCTGT
TGGATGCTTTCAGCACGTGAGTTTTTTTTGGCTCGCTTTTTTGTGTTTGG
TGGAAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig51:13644..16300-

>mRNA_L-elsbetiae_contig51.13142.1 ID=mRNA_L-elsbetiae_contig51.13142.1|Name=mRNA_L-elsbetiae_contig51.13142.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=870bp|location=Sequence derived from alignment at L-elsbetiae_contig51:13644..16300- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTCAGTTTCTGATCAAGATCGTAAACCACTTCGCCAGCGAGATCAT
CACTAAGCGCTTGGCGAACTCGCGAGCATTCCAGCAGTTCGCGATGAAGA
CGCACCTGAAGATGGCTCAGTTTCTGATCAAGATCGTAAACCACTTCGCC
AGCGAGATCATCACTAAGCGCTTGGCGAACTCGCGAGCATTCCAGCAGTT
CGCGATGAAGACGCACCTGAAGGTTGAGCAAACGAAGAAGGCGGCGGAAA
ACCCGGCGGAGGCCGCAAAGCTCATGCGCGGGGCCGGGGAGAAGGTCAAG
GCGGAGGCGGAGTCGGTGGCGTCGAGCTTCGAACGCTTCAAGGCCGCGCT
CAAAGAAGAGGTTTCTGAAGGGGGGGGCGGGGGGAGTGCCGCCCGCAGCA
GCAGCAGCAGCGGCGGCAGCGGCAGATCTACAGCAGCGACGAGCGGCAAC
GTGCCGCCAAAAAGGCGCCCGACAAGTGCAGGCGGGGGTGTTGGCGGCAT
CAACAGCGACATTGCTGCCCGCGTTCAACGACGGCGGAGAAGATGAGTTG
AGCAAACGAAGAAGGCGGCGGAAAACCCGGCGGAGGCCGCAAAGCTCATG
CGCGGGGCCGGGGAGAAGGTCAAGGCGGAGGCGGAGTCGGTGGCGTCGAG
CTTCGAACGCTTCAAGGCCGCGCTCAAAGAAGAGGTTTCTGAAGGGGGGG
GCGGGGGGAGTGCCGCCCGCAGCAGCAGCAGCAGCGGCGGCAGCGGCAGA
TCTACAGCAGCGACGAGCGGCAACGTGCCGCCAAAAAGGCGCCCGACAAG
TGCAGGCGGGGGTGTTGGCGGCATCAACAGCGACATTGCTGCCCGCGTTC
AACGACGGCGGAGAAGATGA
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