mRNA_L-elsbetiae_contig51.13141.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig51.13141.1
Unique NamemRNA_L-elsbetiae_contig51.13141.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig51.13141.1 vs. uniprot
Match: A0A6H5KX93_9PHAE (C2H2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KX93_9PHAE)

HSP 1 Score: 231 bits (590), Expect = 2.600e-70
Identity = 131/176 (74.43%), Postives = 143/176 (81.25%), Query Frame = 2 
Query:   98 AVEEEDSGERPTGPKKKTGIFSYIKTTTESAGGNTNPSA-----QATGGDGXXXXXXXXXXXXXXXVARPNSTALSNILRSDRRTNIRMDREQFDGAQTRLRKLAPEGREVEDNFSTGCRPDKTGKKDHPFVCSVCPMSFPMATQLSDHLERAHGVFKHPSLITPNKTLSAGLASD 610
            AV+ ++   + +GPK+KTGIFSYIK T  +  GN NP A      AT  DG    XXXXXXXXX   ARPNS AL NILRSDRRTNIRMDREQFDGAQTRLRKLAPEG +V DNFSTGCRPDKTGKKDHPFVC+ CPMSFPMAT LSDHLERAHG+FKHPSLITPNKTLSAGLA++
Sbjct:  226 AVDSDEDPPKSSGPKEKTGIFSYIKKTAAAINGN-NPIAGSSGRDATTADGRAAGXXXXXXXXXARAARPNSAALVNILRSDRRTNIRMDREQFDGAQTRLRKLAPEGNDVCDNFSTGCRPDKTGKKDHPFVCTQCPMSFPMATLLSDHLERAHGIFKHPSLITPNKTLSAGLAAE 400
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig51.13141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KX93_9PHAE2.600e-7074.43C2H2-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig51contigL-elsbetiae_contig51:8431..10773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size876
Cds size873
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig51.13141.1prot_L-elsbetiae_contig51.13141.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig51 8431..10771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816518.428037-CDS-L-elsbetiae_contig51:8430..86321622816518.428037-CDS-L-elsbetiae_contig51:8430..8632Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 8431..8632 +
1691683617.7712386-CDS-L-elsbetiae_contig51:8430..86321691683617.7712386-CDS-L-elsbetiae_contig51:8430..8632Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 8431..8632 +
1622816518.439262-CDS-L-elsbetiae_contig51:8952..91791622816518.439262-CDS-L-elsbetiae_contig51:8952..9179Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 8953..9179 +
1691683617.781977-CDS-L-elsbetiae_contig51:8952..91791691683617.781977-CDS-L-elsbetiae_contig51:8952..9179Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 8953..9179 +
1622816518.4497657-CDS-L-elsbetiae_contig51:9587..96661622816518.4497657-CDS-L-elsbetiae_contig51:9587..9666Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 9588..9666 +
1691683617.7988079-CDS-L-elsbetiae_contig51:9587..96661691683617.7988079-CDS-L-elsbetiae_contig51:9587..9666Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 9588..9666 +
1622816518.461532-CDS-L-elsbetiae_contig51:10406..107711622816518.461532-CDS-L-elsbetiae_contig51:10406..10771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 10407..10771 +
1691683617.812506-CDS-L-elsbetiae_contig51:10406..107711691683617.812506-CDS-L-elsbetiae_contig51:10406..10771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 10407..10771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig51.13141.1

>prot_L-elsbetiae_contig51.13141.1 ID=prot_L-elsbetiae_contig51.13141.1|Name=mRNA_L-elsbetiae_contig51.13141.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=291bp
AAREREGEGEGEREGQGQGAGEREGQGQAHPGGGRRGGLGREADGPQEKD
RHLLLYQDHHGKRRRQHESVGAGNGRRRAGGGRGWQGRGRSREGRAAEQH
GAVEHPPQRPAHQHQDGPRAVRRGADAAPQAGARGEGGGGQLQHRVPARQ
DRQERPPVRVQRLPDELPHGDAAQRPPRASPRSVQAPVAHHSEQDPVGGA
RLRRVNKTNKQKKNGRVACRRRLNKTNKEKKNGRVGAPLSLFVRSSFGLA
TPRRVPLCCAGCCWYDGVSCSRAPNSEKVAVGDFSVYFLDK
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mRNA from alignment at L-elsbetiae_contig51:8431..10773+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig51.13141.1 ID=mRNA_L-elsbetiae_contig51.13141.1|Name=mRNA_L-elsbetiae_contig51.13141.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2343bp|location=Sequence derived from alignment at L-elsbetiae_contig51:8431..10773+ (Laminarionema elsbetiae ELsaHSoW15)
GCAGCGAGAGAAAGAGAGGGAGAAGGAGAGGGAGAAAGAGAGGGCCAGGG
ACAGGGAGCGGGAGAGAGAGAGGGACAGGGACAGGCACATCCGGGAGGCG
GTCGAAGAGGAGGACTCGGGCGAGAGGCCGACGGGCCCCAAGAAAAAGAC
CGGCATCTTCTCTTATATCAAGACCACCACGGAAAGCGCAGGCGGCAACA
CGGTAAAGAGGCCACCGCCGTTTTATGCATATTGTGTGTGTGTGCATGTG
TGTGTTTGTGCTTGGTCGAGCGAGCCAACGCGTATCTCTTTGGAAACGCA
TCAGCATTCACCTCCGCGCGAGACTGAGACTCTACTGCTGTCACACCTCT
CTGCAGCTCCTGGGGACTTCAGCTTTAGATATTACGGCATTCGTTCCGGT
TATTTCGAGTAAGTGTCGAGGGCTGTGAGAGACCGAGCTTTGTTTTCTCT
ATGGTCAAACGTCGTCTATCTTAAGTGCTCCGACCCGCGCGCTCCCTCTC
TCCCCGCTCGGCCTGCCTTCAGAATCCGTCGGCGCAGGCAACGGGCGGAG
ACGGGCGGGCGGCGGGCGCGGATGGCAGGGCCGCGGCCGCAGCCGCGAGG
GTCGCGCGGCCGAACAGCACGGCGCTGTCGAACATCCTCCGCAGCGACCG
GCGCACCAACATCAGGATGGACCGCGAGCAGTTCGACGGGGCGCAGACGC
GGCTCCGCAAGCTGGCGCCAGAGGGGAGGGAGGTGGAGGACAACTTCAGG
TACGCTACGGGCCGTGCCGCCGTTGTGCTGTGTGCGGTGTGCGGTGTGCG
CGTGGGCGTGCACGTGCGCGTGTTTTTCTTGGCGCAGGACAGCAGAATGT
AGTTGCCCGATGACTCTTTCTCTTCCTCTCTCTTTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCAGAACAAGCTGGC
GCCCCGAGAGCATAAGACGGTCGGAAAACCTCAGCTTGTTTTCGTCACGG
CCCTCCTTCCCGCGCTCCCTTCTGACCGCACTCTTCCGAACCCTAGGCCG
ATCCCTCGTCCTCCTTTCCTTGCGTTTCTTACCGCGTCTTTGGCCTCTTG
TTGTTGCCCCCCCCCCCCCTCCTCGTTTCTCGCTTTTTTTCCCCGCACGT
CGCGTAGCACCGGGTGCCGGCCAGACAAGACCGGCAAGAAAGACCACCCG
TTCGTGTGCAGCGTCTGCCCGATGAGCTTCCCCATGGTGAGCCCCAGGAC
GGGGAACGGGAGGGGCGCGTGGCCACCGACCGCGCCGGCTGATTGTGGGC
AGCACTTTTTTTTGCCAGCTCCGCATTGTGTTGTTCCAAGAGCCATCTTT
TCGGAAGGCAATGCGCCGCCGGTCTGTTTCTATATACCGTAGGTGACATA
AGATAAGACACCCCCTGGACCGAGATTGAAAGCTTGGTTACTCCGCAACG
AATACGATTCTAACCACAAACGCCACATTTTCGGACAGCTCTCGACGAGA
TCTTTCAAACGCCGCCCTTTTCGGGACTGGCGCTCTGCTTGCTGTGGAGT
ACTTGGGCTTTGAAAATCGGTCCAGGGGGTGTCTTATCTCATGTCACCTA
CGGTAGCGTTGCCGCTTTATTTGGTTTGCTCGGTGCGGAGCGTCCGTTGT
CTCCTTCCCCCGGGGAAGCAACGCCACGCCACAGCCCGAGATTCGTGCAC
AGATCACAAGAGCACCCACGACTGCTGTAAGAAGCCCCGTAGACATAGTT
GGCGCAGTTGCGCAGCCATCGGAGGCGCCTCCTGTAGGAGGGCGTCTCCC
AGTATGGCGAGGTCAGTTAGTTGTGTTTGTAAAAAGTGCGTCTCAGCCGC
TGCCAGCCTGGGTGTCTTTAGTAGCTCAGGCTCACGCCGGCCCGCTCTGT
TGTTCCTTGTCTCCCGTGTCGCTGGCAATTTTACCAATTTTCTCCTCTCT
CGGGACCGACCCGACTCGCGCGACAGGCGACGCAGCTCAGCGACCACCTC
GAGCGAGCCCACGGAGTGTTCAAGCACCCGTCGCTCATCACTCCGAACAA
GACCCTGTCGGCGGGGCTCGCCTCAGACGGGTAAACAAAACAAATAAGCA
GAAGAAAAACGGGCGTGTGGCTTGCCGCAGGCGGCTAAACAAAACAAATA
AAGAGAAGAAAAACGGGCGTGTAGGTGCCCCTCTCTCGTTGTTCGTTCGT
TCCTCTTTCGGTTTGGCGACCCCGCGGCGCGTTCCTCTGTGTTGTGCTGG
GTGCTGCTGGTATGATGGCGTTTCCTGCAGCAGGGCCCCTAATTCTGAAA
AAGTGGCTGTGGGGGATTTTTCAGTCTATTTCCTAGATAAATA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig51:8431..10773+

>mRNA_L-elsbetiae_contig51.13141.1 ID=mRNA_L-elsbetiae_contig51.13141.1|Name=mRNA_L-elsbetiae_contig51.13141.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1746bp|location=Sequence derived from alignment at L-elsbetiae_contig51:8431..10773+ (Laminarionema elsbetiae ELsaHSoW15)
GCAGCGAGAGAAAGAGAGGGAGAAGGAGAGGGAGAAAGAGAGGGCCAGGG
ACAGGGAGCGGGAGAGAGAGAGGGACAGGGACAGGCACATCCGGGAGGCG
GTCGAAGAGGAGGACTCGGGCGAGAGGCCGACGGGCCCCAAGAAAAAGAC
CGGCATCTTCTCTTATATCAAGACCACCACGGAAAGCGCAGGCGGCAACA
CGGCAGCGAGAGAAAGAGAGGGAGAAGGAGAGGGAGAAAGAGAGGGCCAG
GGACAGGGAGCGGGAGAGAGAGAGGGACAGGGACAGGCACATCCGGGAGG
CGGTCGAAGAGGAGGACTCGGGCGAGAGGCCGACGGGCCCCAAGAAAAAG
ACCGGCATCTTCTCTTATATCAAGACCACCACGGAAAGCGCAGGCGGCAA
CACGAATCCGTCGGCGCAGGCAACGGGCGGAGACGGGCGGGCGGCGGGCG
CGGATGGCAGGGCCGCGGCCGCAGCCGCGAGGGTCGCGCGGCCGAACAGC
ACGGCGCTGTCGAACATCCTCCGCAGCGACCGGCGCACCAACATCAGGAT
GGACCGCGAGCAGTTCGACGGGGCGCAGACGCGGCTCCGCAAGCTGGCGC
CAGAGGGGAGGGAGGTGGAGGACAACTTCAGAATCCGTCGGCGCAGGCAA
CGGGCGGAGACGGGCGGGCGGCGGGCGCGGATGGCAGGGCCGCGGCCGCA
GCCGCGAGGGTCGCGCGGCCGAACAGCACGGCGCTGTCGAACATCCTCCG
CAGCGACCGGCGCACCAACATCAGGATGGACCGCGAGCAGTTCGACGGGG
CGCAGACGCGGCTCCGCAAGCTGGCGCCAGAGGGGAGGGAGGTGGAGGAC
AACTTCAGCACCGGGTGCCGGCCAGACAAGACCGGCAAGAAAGACCACCC
GTTCGTGTGCAGCGTCTGCCCGATGAGCTTCCCCATGCACCGGGTGCCGG
CCAGACAAGACCGGCAAGAAAGACCACCCGTTCGTGTGCAGCGTCTGCCC
GATGAGCTTCCCCATGGCGACGCAGCTCAGCGACCACCTCGAGCGAGCCC
ACGGAGTGTTCAAGCACCCGTCGCTCATCACTCCGAACAAGACCCTGTCG
GCGGGGCTCGCCTCAGACGGGTAAACAAAACAAATAAGCAGAAGAAAAAC
GGGCGTGTGGCTTGCCGCAGGCGGCTAAACAAAACAAATAAAGAGAAGAA
AAACGGGCGTGTAGGTGCCCCTCTCTCGTTGTTCGTTCGTTCCTCTTTCG
GTTTGGCGACCCCGCGGCGCGTTCCTCTGTGTTGTGCTGGGTGCTGCTGG
TATGATGGCGTTTCCTGCAGCAGGGCCCCTAATTCTGAAAAAGTGGCTGT
GGGGGATTTTTCAGTCTATTTCCTAGATAAAGCGACGCAGCTCAGCGACC
ACCTCGAGCGAGCCCACGGAGTGTTCAAGCACCCGTCGCTCATCACTCCG
AACAAGACCCTGTCGGCGGGGCTCGCCTCAGACGGGTAAACAAAACAAAT
AAGCAGAAGAAAAACGGGCGTGTGGCTTGCCGCAGGCGGCTAAACAAAAC
AAATAAAGAGAAGAAAAACGGGCGTGTAGGTGCCCCTCTCTCGTTGTTCG
TTCGTTCCTCTTTCGGTTTGGCGACCCCGCGGCGCGTTCCTCTGTGTTGT
GCTGGGTGCTGCTGGTATGATGGCGTTTCCTGCAGCAGGGCCCCTAATTC
TGAAAAAGTGGCTGTGGGGGATTTTTCAGTCTATTTCCTAGATAAA
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