mRNA_L-elsbetiae_contig51.13140.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig51.13140.1
Unique NamemRNA_L-elsbetiae_contig51.13140.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig51.13140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig51contigL-elsbetiae_contig51:7020..8128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size303
Cds size276
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig51.13140.1prot_L-elsbetiae_contig51.13140.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig51 7046..8128 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816518.3667493-UTR-L-elsbetiae_contig51:7019..70451622816518.3667493-UTR-L-elsbetiae_contig51:7019..7045Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig51 7020..7045 +
1691683617.731844-UTR-L-elsbetiae_contig51:7019..70451691683617.731844-UTR-L-elsbetiae_contig51:7019..7045Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig51 7020..7045 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816518.3786101-CDS-L-elsbetiae_contig51:7045..72171622816518.3786101-CDS-L-elsbetiae_contig51:7045..7217Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 7046..7217 +
1691683617.7474163-CDS-L-elsbetiae_contig51:7045..72171691683617.7474163-CDS-L-elsbetiae_contig51:7045..7217Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 7046..7217 +
1622816518.391689-CDS-L-elsbetiae_contig51:8024..81281622816518.391689-CDS-L-elsbetiae_contig51:8024..8128Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 8025..8128 +
1691683617.7592306-CDS-L-elsbetiae_contig51:8024..81281691683617.7592306-CDS-L-elsbetiae_contig51:8024..8128Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig51 8025..8128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig51.13140.1

>prot_L-elsbetiae_contig51.13140.1 ID=prot_L-elsbetiae_contig51.13140.1|Name=mRNA_L-elsbetiae_contig51.13140.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
MKRAYRRRRVDSESDSDGEREEGEMKEPKTQQKRQRQDSAERRSRDRHRN
GSSRRRDRPDRDRDPDRDSRESERHRSKKPARDGRGDAGGIR
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mRNA from alignment at L-elsbetiae_contig51:7020..8128+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig51.13140.1 ID=mRNA_L-elsbetiae_contig51.13140.1|Name=mRNA_L-elsbetiae_contig51.13140.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1109bp|location=Sequence derived from alignment at L-elsbetiae_contig51:7020..8128+ (Laminarionema elsbetiae ELsaHSoW15)
CCGGCCAATAGAGCATCAACAGTGCCATGAAGAGAGCATACCGTCGGCGC
CGTGTGGACTCTGAATCCGACTCGGATGGAGAGCGCGAGGAGGGCGAGAT
GAAAGAACCTAAGACACAGCAGAAGAGACAGAGACAAGATAGCGCCGAGA
GGAGATCGAGAGACCGCCACCGCAACGGCTCATCAAGGAGAAGAGACCGT
GAGTGATGTTTCAACATTGAAAGTGACACGGTGTTTGGGGCCCCCACTAG
GTAAGCTCGTTCACCTGCGATCTCTATCTCACCAAAATGGAAAAGGCTTA
CATACTTGCGCTGTGGCATCATCAGCAACAGCAGCTACTTCTAGATACTT
GTAACCTGCACATCCCCGGCTTTCTCTCCCCACAGCAGTTATGACAGCAG
GGGGTGCCATTCTCGCTCATGTGCCCCGCCGATGTTGCGTGGAGGATTTC
TGTGTAAGAGGGTTATCGATCTTGGGCAGGCTTGAAAGAGACACTCGTAT
GCCTGTGGAGCCTTATGAAATGTTAGATAATGTTTGCATCACACGCACAC
ACAACCACGCGCAGTCTCGTTGTGAATTGTACAGCAGTACCCCGTCTTCG
CAGGTATGGTACATGTGTTGTAGGTATGTGTATCTAGCCTGATGGATGTG
CACAGCAGTAGTAACCAACCGGCTTGCGAGCGGGGTTGACTGGCGAGTGG
GGGATACATCGTGCGGCTTTGCAGTCGCTGCCGACGAGGATTGACTCGTG
CTGTGCAAGCCGGCCTGAACGATTGTGCGGTAATGCCGGTCGCCCCGCTC
CGGTGGTCTAGCAGTTGGTACCCCGGAACACCTTGAGTAGTCAGCAGGCC
GTGGGTTCGAAACCCGGCTGGAGCGACTTTTTCTTGCGAAGCGAGTTTTT
TCTCTCGCTCCTGTCTCTGTCAGTGGACAACAGTGCCCAGCGTGTGTACA
CAAACTGCAAACTTCGGCCTCACTGCTGTTGTCTACGTATTTAATCAAAA
AGCAGGGCCTGACCGCGACCGAGACCCAGACCGAGACAGCAGGGAGAGCG
AACGGCATCGTTCTAAGAAGCCAGCGCGGGATGGGCGGGGAGATGCCGGA
GGGATTAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig51:7020..8128+

>mRNA_L-elsbetiae_contig51.13140.1 ID=mRNA_L-elsbetiae_contig51.13140.1|Name=mRNA_L-elsbetiae_contig51.13140.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig51:7020..8128+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGAGAGCATACCGTCGGCGCCGTGTGGACTCTGAATCCGACTCGGA
TGGAGAGCGCGAGGAGGGCGAGATGAAAGAACCTAAGACACAGCAGAAGA
GACAGAGACAAGATAGCGCCGAGAGGAGATCGAGAGACCGCCACCGCAAC
GGCTCATCAAGGAGAAGAGACCATGAAGAGAGCATACCGTCGGCGCCGTG
TGGACTCTGAATCCGACTCGGATGGAGAGCGCGAGGAGGGCGAGATGAAA
GAACCTAAGACACAGCAGAAGAGACAGAGACAAGATAGCGCCGAGAGGAG
ATCGAGAGACCGCCACCGCAACGGCTCATCAAGGAGAAGAGACCGGCCTG
ACCGCGACCGAGACCCAGACCGAGACAGCAGGGAGAGCGAACGGCATCGT
TCTAAGAAGCCAGCGCGGGATGGGCGGGGAGATGCCGGAGGGATTAGGGG
CCTGACCGCGACCGAGACCCAGACCGAGACAGCAGGGAGAGCGAACGGCA
TCGTTCTAAGAAGCCAGCGCGGGATGGGCGGGGAGATGCCGGAGGGATTA
GG
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