mRNA_L-elsbetiae_contig5076.13106.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5076.13106.1
Unique NamemRNA_L-elsbetiae_contig5076.13106.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5076.13106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5076contigL-elsbetiae_contig5076:5840..6286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size305
Cds size294
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5076.13106.1prot_L-elsbetiae_contig5076.13106.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5076 5851..6286 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816514.7301652-UTR-L-elsbetiae_contig5076:5839..58501622816514.7301652-UTR-L-elsbetiae_contig5076:5839..5850Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5076 5840..5850 +
1691683615.1067667-UTR-L-elsbetiae_contig5076:5839..58501691683615.1067667-UTR-L-elsbetiae_contig5076:5839..5850Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5076 5840..5850 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816514.7438598-CDS-L-elsbetiae_contig5076:5850..60421622816514.7438598-CDS-L-elsbetiae_contig5076:5850..6042Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5076 5851..6042 +
1691683615.1157472-CDS-L-elsbetiae_contig5076:5850..60421691683615.1157472-CDS-L-elsbetiae_contig5076:5850..6042Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5076 5851..6042 +
1622816514.7590995-CDS-L-elsbetiae_contig5076:6184..62861622816514.7590995-CDS-L-elsbetiae_contig5076:6184..6286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5076 6185..6286 +
1691683615.1259093-CDS-L-elsbetiae_contig5076:6184..62861691683615.1259093-CDS-L-elsbetiae_contig5076:6184..6286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5076 6185..6286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5076.13106.1

>prot_L-elsbetiae_contig5076.13106.1 ID=prot_L-elsbetiae_contig5076.13106.1|Name=mRNA_L-elsbetiae_contig5076.13106.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
MDLLAAHKQRQRDQSTWTIKKYKLDSTLSQHCRRVDNANAHQQCRCCCDM
DHALKTIDILRSKMVTKNTRIEAEVQRRLEMDQQLQHATAWGDKQRF*
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mRNA from alignment at L-elsbetiae_contig5076:5840..6286+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5076.13106.1 ID=mRNA_L-elsbetiae_contig5076.13106.1|Name=mRNA_L-elsbetiae_contig5076.13106.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=447bp|location=Sequence derived from alignment at L-elsbetiae_contig5076:5840..6286+ (Laminarionema elsbetiae ELsaHSoW15)
GAAGTGGGCATATGGACCTTCTGGCTGCACACAAACAACGACAGCGTGAT
CAGAGTACCTGGACGATCAAGAAATACAAGCTCGATTCGACATTGAGTCA
GCATTGCCGCAGGGTAGACAACGCGAATGCACACCAGCAGTGCCGCTGCT
GTTGCGACATGGACCATGCGCTGAAAACAATTGACATCCTCAGGTCCAAA
ATGGTGAGTATTTCTTCTGCACACCTGGAAAAGGGATAATCATCTCGGCA
AATAAATTGATTTTACTTTACCTCATGGGAGATGCATGTATATACGTGCC
ACACGGCTAATATCTTCGTCTGTTCGTCCATTTGTTTTGGCACAGGTGAC
CAAGAACACTAGGATTGAAGCAGAGGTTCAACGCCGGCTTGAAATGGATC
AACAGCTTCAACACGCTACTGCTTGGGGGGACAAACAAAGGTTTTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5076:5840..6286+

>mRNA_L-elsbetiae_contig5076.13106.1 ID=mRNA_L-elsbetiae_contig5076.13106.1|Name=mRNA_L-elsbetiae_contig5076.13106.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig5076:5840..6286+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACCTTCTGGCTGCACACAAACAACGACAGCGTGATCAGAGTACCTG
GACGATCAAGAAATACAAGCTCGATTCGACATTGAGTCAGCATTGCCGCA
GGGTAGACAACGCGAATGCACACCAGCAGTGCCGCTGCTGTTGCGACATG
GACCATGCGCTGAAAACAATTGACATCCTCAGGTCCAAAATGATGGACCT
TCTGGCTGCACACAAACAACGACAGCGTGATCAGAGTACCTGGACGATCA
AGAAATACAAGCTCGATTCGACATTGAGTCAGCATTGCCGCAGGGTAGAC
AACGCGAATGCACACCAGCAGTGCCGCTGCTGTTGCGACATGGACCATGC
GCTGAAAACAATTGACATCCTCAGGTCCAAAATGGTGACCAAGAACACTA
GGATTGAAGCAGAGGTTCAACGCCGGCTTGAAATGGATCAACAGCTTCAA
CACGCTACTGCTTGGGGGGACAAACAAAGGTTTTAGGTGACCAAGAACAC
TAGGATTGAAGCAGAGGTTCAACGCCGGCTTGAAATGGATCAACAGCTTC
AACACGCTACTGCTTGGGGGGACAAACAAAGGTTTTAG
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