mRNA_L-elsbetiae_contig5003.13009.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5003.13009.1
Unique NamemRNA_L-elsbetiae_contig5003.13009.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5003.13009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5003contigL-elsbetiae_contig5003:8719..9044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size326
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816503.6556008-CDS-L-elsbetiae_contig5003:8718..90421622816503.6556008-CDS-L-elsbetiae_contig5003:8718..9042Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5003 8719..9042 +
1691683607.1910095-CDS-L-elsbetiae_contig5003:8718..90421691683607.1910095-CDS-L-elsbetiae_contig5003:8718..9042Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5003 8719..9042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5003.13009.1prot_L-elsbetiae_contig5003.13009.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5003 8719..9042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5003.13009.1

>prot_L-elsbetiae_contig5003.13009.1 ID=prot_L-elsbetiae_contig5003.13009.1|Name=mRNA_L-elsbetiae_contig5003.13009.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
RKGCEAPNGRENNTSTTTATTTTTTTTTESNNPCSRTGAACKASTGPSCV
ADDQGCNRLLSVDPTSGGPPPAVELPPAPAREPGGTGAGRPRPVVRDKAH
RGVGAKER
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mRNA from alignment at L-elsbetiae_contig5003:8719..9044+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5003.13009.1 ID=mRNA_L-elsbetiae_contig5003.13009.1|Name=mRNA_L-elsbetiae_contig5003.13009.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=326bp|location=Sequence derived from alignment at L-elsbetiae_contig5003:8719..9044+ (Laminarionema elsbetiae ELsaHSoW15)
CGGAAAGGATGCGAAGCCCCCAACGGGAGAGAAAATAACACAAGTACCAC
CACCGCTACAACCACCACCACCACCACCACCACCGAGAGCAACAATCCCT
GTAGTCGAACCGGCGCCGCGTGCAAAGCATCCACGGGGCCCTCTTGTGTC
GCTGATGACCAGGGCTGCAATCGGCTGCTTTCCGTCGACCCGACCAGCGG
GGGGCCGCCGCCTGCCGTAGAACTCCCGCCGGCACCTGCCCGCGAGCCGG
GTGGAACAGGGGCGGGTCGTCCTCGCCCGGTCGTCCGAGACAAAGCACAT
CGGGGCGTTGGTGCGAAGGAGCGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5003:8719..9044+

>mRNA_L-elsbetiae_contig5003.13009.1 ID=mRNA_L-elsbetiae_contig5003.13009.1|Name=mRNA_L-elsbetiae_contig5003.13009.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig5003:8719..9044+ (Laminarionema elsbetiae ELsaHSoW15)
CGGAAAGGATGCGAAGCCCCCAACGGGAGAGAAAATAACACAAGTACCAC
CACCGCTACAACCACCACCACCACCACCACCACCGAGAGCAACAATCCCT
GTAGTCGAACCGGCGCCGCGTGCAAAGCATCCACGGGGCCCTCTTGTGTC
GCTGATGACCAGGGCTGCAATCGGCTGCTTTCCGTCGACCCGACCAGCGG
GGGGCCGCCGCCTGCCGTAGAACTCCCGCCGGCACCTGCCCGCGAGCCGG
GTGGAACAGGGGCGGGTCGTCCTCGCCCGGTCGTCCGAGACAAAGCACAT
CGGGGCGTTGGTGCGAAGGAGCGGCGGAAAGGATGCGAAGCCCCCAACGG
GAGAGAAAATAACACAAGTACCACCACCGCTACAACCACCACCACCACCA
CCACCACCGAGAGCAACAATCCCTGTAGTCGAACCGGCGCCGCGTGCAAA
GCATCCACGGGGCCCTCTTGTGTCGCTGATGACCAGGGCTGCAATCGGCT
GCTTTCCGTCGACCCGACCAGCGGGGGGCCGCCGCCTGCCGTAGAACTCC
CGCCGGCACCTGCCCGCGAGCCGGGTGGAACAGGGGCGGGTCGTCCTCGC
CCGGTCGTCCGAGACAAAGCACATCGGGGCGTTGGTGCGAAGGAGCGG
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